LOC110529515 (LOC106571324)


Basic Information

Item Value
gene id LOC110529515
gene name LOC106571324
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17825436 ~ 17833210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611760.2
ACAGATTTGGTATAAATACCCTGAGCCCAGTGGCCTGGGTAGCAGCAGCCAGCTCAGACTTAACCTCCAGACTTAAGGACTATACAGCAACGTGCCGGGACAGCAGCCTCCCGACCCCCACTGATCTTTTGGAGCCTAAGTCTTCTCTGCTGGTTTAACGTTACAAGATGGACCTCAGGGTGACAAGTGTTCTCCTCCTCCTGGTGGCCTTGGCCGTGGCAACGCCAGAGAGATATTACCATGTACAGAAAGTAGCCAAGCAGCAGTATCCTACCAAGAGCCATGTCCAAACTGTTGCAGGGGAGCCAGGTATTCCAGGATCCCCTGGTGAGCCAGGACCTATGGGCCCCCCTGGGCCTCCCGGCAAGAGTGGCATGGGACATCCCGGACCAAAGGGCCCAGCCGGGACCCCCGGACCTGCTGGATACTCTGCAGCTGGCAAGCCTGGCAACCCAGGTGCTCCTGGGAAACCAGGTAGTAATGGCATGCCTGGTGAGAAGGGCCATACTGGCGCAACTGGCGCCATGGGTCCAAGAGGATCTCCCGGTTCCCCTGGAAGCCCAGGACCTGCTGGACAATCTTCTGTTGGCAAACCAGGCCCACACGGTCTGCCCGGCGGCATGGGGCCAAGGGGTGAGCCCGGACTTAAAGGACATCCAGGTATCCCTGGTCTGCCAGGAcaaaggggagagaagggagttgGTATTCATGGGGCACCAGGTGCAAATGGTGCAGTGGGACCAATGGGACCATCTGGTATGCCTGGTCTACCTGGAGTTGGTAAGTCTGGTGCCACTGGATACCCCGGGGAGCCTGGAAAGTCAGGTACTCCAGGTAGGGATGGAGCTCCAGGGGCCATGGGTCTGCCAGGGCTAAAGGGCCACAATGGAAACCCTGGGGTAGGAGCACCAGGAAAGGCAGGTGAGAATGGCAGTCCAGGTATGCCTGGAAATATGGGACCTAAAGGTCCCCAGGGACATGCTGGACAACCAGGTGCACCTGGCATGCCAGGAGTTGGTAAACCAGGAGCTAATGGCATGCCAGGAGACAGAGGATCACCAGGTACATCCGGAACCACTGGTCAAAAAGGAGAGCCAGGGCCAACAGGTTACACTGGGGCAACAGGTGCTACTGGGCTTACGGGTCCAGCTGGTCCCCAGGGTGCTAGAGGATTCCAGGGAGAGACAGGTATTCAGGGACTTAAAGGTGATGTCGGCATGGTGGGAGCTCCTGGGGCAAAGGGAACCAAGGGagatcagggacatcagggttatGCAGGGAAGTCAGGTATCCCCGGGGCAGCAGGACCTCCTGGTGCAACAGGTGCTACAGGACATCAGGGTAATAAGGGAGGTCAGGGCCATACTGGCGCTCCAGGTACTCCAGGTGCAAATGGGCTTCCAGGAGCAAAGGGACACACAGGCACACCTGGAGGACCTGGGAAACCAGGCGAGAACGGTATCCCAGGGGGAAGAGGACCAGTGGGGCCTTCAGGTCCAGCAGGTCAACCAGGTCTTAAGGGTCACCCCGGTCTTCCCGGCACACCCGGCCCAGCTGGCCAGATGGCGAAGGGAGTTTCTGGTCCCATGGGTCCACCTGGAGCTCCTGGTTCCAGAGGTCACAATGGTAACCCAGGTGCTATGGGACCTCCTGGCCCACCTGGTCCCCCTGGTGAGATGGTCTACCATCATGAGAAGAGCATGCCCATAAAGTCCCATGAGATTATGATGCCTCATCATGAGATGATGAAGGCCCCTATGTCTGCCTTCAGCGCTGTTCTGACTAGGGCTTACCCTTCAGCGGGATCACCTATTCAGTTCAACCAGATTATTTACAATGGTGAGCAGCACTATGACTCCCAGACTGGCATCTTCTCCTGCCAGGTACCAGGTCTCTATTATTTCTCCTACCATATGCATGTCAATGGTGCTAATGCATTGGTGGCACTGTACAAAAATGGTGAGCCAATCATGTTCTCATACGATGAGTACAATAAGGGCTTCTTGGATCAGTTGTCTGGCAGCACTGTACTTATGCTGAATGCCCATGACCAAGTCTACATTCAGGTCCCTGATGAGGAGACCAATGGTGTCTTCGCTGCCGACAATGTTCACTGCTCTTTCTCTGGGTTCCTGATTGCTTCAACGTGATACAGACACTAATAAAACCTTGAAACCTTAAAGAAAGTACTTAAAGAATAGATCAGTTTACAACTTCCATTGAGATTTGGttgtcattgtagaataaaaaaTGTACGTAATATTCTACAAGTTAATTTGTCTTACAAAAAGCTAAAAAAGTAAGAGCAGCAATTTTCTGAAGTATTCCATTGAGACGGGCATTCAGTTCATGGAAGCATTAAAATAAATTCAGGGGAAGAATATAATTTAGGAATTAAATGGTTTTTATCACTATTCCCTATTTGCACAAGTATTCAGCAAACAATGATTAAAAAGTTTGAAAATACACAAAATGGTGCTCTTTGACTGCCTGCAACATTTACAGCAGATTTTTTGTTTTCAAAGTGTTTAATAAATGTCTTGTAATATACATGCAAAGGAaatcatgtttttgtttttttgcaatgCTGTAACAAACCTTTGACAAACCAGCAGTGTATTATTGTTACACGCATTATGAAAAACAGTCATTCAAAAATGTACTATGTCAACAACAACTTTATGCCTGAGGATGCATTTATGCTATGTTTAACTTACTGACCAAAGTAAAGAATAAAGTCGAAGTTCTGAAACTGA

Function

NR:

description
collagen alpha-1(X) chain-like isoform X1

GO: NA

KEGG:

id description
K19479 COL10A; collagen type X alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611760.2 True 2756 mRNA 0.51 3 17825436 17833210

Neighbor

gene id symbol gene type direction distance location
LOC110529511 LOC106571328 coding upstream 123961 17682064 ~ 17701475 (+)
LOC110529193 NA coding upstream 143448 17680205 ~ 17681988 (+)
LOC110529507 LOC106571333 coding upstream 899748 16921776 ~ 16925688 (+)
LOC110529505 LOC106571335 coding upstream 903739 16893102 ~ 16921697 (+)
LOC110529502 LOC106571295 coding upstream 999420 16793718 ~ 16826016 (+)
LOC110529518 LOC106571322 coding downstream 12508 17845718 ~ 17857814 (+)
LOC110529519 LOC106571321 coding downstream 125941 17959151 ~ 18057345 (+)
LOC110531073 NA coding downstream 329495 18162705 ~ 18164856 (+)
LOC110529521 LOC106571319 coding downstream 441157 18274367 ~ 18311064 (+)
LOC118965599 LOC106571319 coding downstream 477697 18310907 ~ 18317600 (+)
G680240 LOC106607725 non-coding upstream 72699 17752317 ~ 17752737 (+)
G680235 LOC106571323 non-coding upstream 77995 17747207 ~ 17747441 (+)
G680202 LOC106571323 non-coding upstream 84115 17741093 ~ 17741321 (+)
G680231 NA non-coding upstream 85344 17739841 ~ 17740092 (+)
G680224 LOC106571323 non-coding upstream 94092 17731005 ~ 17731344 (+)
G680294 NA non-coding downstream 2538 17835748 ~ 17836065 (+)
G680295 NA non-coding downstream 3112 17836322 ~ 17836523 (+)
G680502 NA non-coding downstream 312975 18146185 ~ 18146494 (+)
G680869 NA non-coding downstream 327051 18160261 ~ 18160885 (+)
LOC110529493 LOC106571284 other upstream 1437100 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 1439491 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 2565446 15258311 ~ 15260331 (+)
G676919 NA other upstream 2718293 15105603 ~ 15107143 (+)
G681909 NA other downstream 1330726 19163936 ~ 19165640 (+)
G682611 NA other downstream 1895623 19728833 ~ 19729671 (+)
G683669 NA other downstream 2729665 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 2793740 20626950 ~ 20632899 (+)
G683845 NA other downstream 2873848 20707058 ~ 20707371 (+)

Expression


Co-expression Network