LOC110529518 (LOC106571322)


Basic Information

Item Value
gene id LOC110529518
gene name LOC106571322
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17845718 ~ 17857814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611762.2
ATTAAATACGTTACTCGTTACTTCAAGCGACACCCACCAAACCAGAACAAACGTACCTCTCAGTCTGTTCAAGAACGTACACGAACGTTTTGTGGAACCATGTAGTCCAGTACAAACCGTTCCGCAACGCAGAAAAAGTTCAAGCGACCTGAATGCACATCATGTATGTCGAGAAACCATCAGTTTCCATAACACTGGAACTGACCAATGGCAGGTATCAATTGGCGTTTACTGCTATGAGGGAACACCCACACAAAGAAACGCCTGGAATTTCGGTCTGCAATTACACAATTTTCCCCAGGTGAATGAGACATAAAGGTAACCAGGAAACACTGTGACGCGGTGAGTTGGCCTCGGGCAATAAATCATTTTATTTTACTGCTAGTCGGTGTACTAAATTGTATTCCAGTCCAAAGACCAGGTTTGACAAGTGTTTGGGAAATGAGTCAAACTTTCTAGGATCCAATTCATGATGTGAGAAAATTCATTCGAACCGCAATGGAATATGAGCGCAAAAAACTTTTGACATTTTATTTGATCACAAAATGATTTAGTGCGATTAACCCGGGAGTCTTCACAATGGAAATTCGAGAGAAGTGTTTTTTGTGTTGTCAGACTGTTTTCCCGTGTTTTAATAAACCACGGTCAGATTCAGAGTCGGTGACTGTTAAGAGAGAAATCGTTGTGATTAAAAATGATCACGCGCAGGGTCCCAAAAACAGGGCTTTGCCACCTATACGCCTTGAGAAACCGGGATACGTTTATATCGCTCTCTATGATTATACCGCCCGAACGGAGGAGGACTTGAGCTTCAATGCTGGGGACAAGTTAgaagctttggataaaagtgctGGCGATTGGTGGTACGCAAAAGCGCTCACTGGAATTTCAGCTGCCAAGAAGGGTTACATTCCAGCCAATTATGTGGCACCTGTGGAGAGTCTGGACGCTGAGCCATGGTACTTTGCAGACACCAAGAGACTGGATGCTGAGAAGCTGCTTTTGTCAGAGGGGAACCAGCATGGAGCCTTCCTCATTAGACACTGTGAGAGTCAAAAAGGAGAGCTCTCACTCTCAGTATTGGACAGGGACAAAGTGAAGCACTACAAATTAAGGAAGGTGGATACTGGAGGCTACTATGTGTCAAGATCTAGGACCTTTCTGACTCTGAGGGAGTTAGTGGAACACTATTCCAAACTGGAGGATGGTCTCTGTGTGCGTTTGCTTGAACCATGTAAAAAGACGGAGGCTCCTCAAACCCACGGTCTGTCCTACAACACAGCCGACCACTGGGAGATTGACCGGTCGTCTGTCAAACTGTTGAATAAACTGGGCGCTGGACAATTTGGAGAAGTCTATGAAGGCATCTGGAACGACACCACTTCAGTAGCAGTGAAGACCCTGAAACATGGCTCCATGGACGCTAAGGACTTCCTACAGGAGGCCCAGATCATGAAGAAACTGCGGCACCCCAAACTGATCCAGCTCTACGCTGTGTGTACTGTGGAGGAACCCATCTACATCATCACAGAGCTCATGAAGAATGGCAGTCTGCTGGACTACCTTCAGAAATCCAATAGCTCTTCCTCCAAGGACATGGGTATGAAGCTTGGTGTCTCGGAGCAGATAGAGATGGCTGCTCAGGTGGCTTCTGGGATGGCCTACCTGGAGCAGCAGAACTACATCCACAGAGACCTGGCGGCACGCAACGTTCTGGTGGGAGAAAACAACGTCTGCAAGGTGGCTGACTTCGGACTCGCCAGAGTCTTCATGATGGAGAGTGAGAATGTGTATGAAGCCAAAGAGGGCACCAAGTTTCCTGTGAAATGGACCGCCCCTGAAGCCATCCATGGCAACAAGTTCACCATCAAGTCTGATGTGTGGTCCTTTGGCATTCTGCTGTATGAGATCATGACCTTCGGTCAGATGCCCTATGCAACCATGACCAACTACCAGGTGGTCCAACGTGTGCCCACGGGTTACAGGATGCCCTGCCCACCAAACTGTCCCAAGGTGATGTATGAGATCATGTCTGACTGCTGGAAGGACAATGAGAACGACAGACCCACCTTCGAAACCCTGCAGTGGAAGCTGGAGGACTTCTTTGACCTGGATGTGACCTCTTATGATGATGCCAACCGTTActagtactgtgttgtattgagtGTTCAATGATGCTCTCCTCATACTCGTAGCAAGAGTCAGCAGAGGAAAGTACAGTATGTCCACTGTCACAGGTAATTTAATGATATGCCTAAGATAAATGGCATTTCATTCTCCCAACAGTTAGTATCTAGAATACAGGTGCTATTGATTTTAGCATAGTTGAACCGTCTACTTCCTGATCACATTATGGTTGGATATGTATTTGTTAGGATTATATTATGAGGTTGAACACGTGTGACCACAAACGGTTTGATAAGAAAATGTTGTATGTGGAGGTTTTATTTGGCTGCTTGTGTATAGTTGTCGTGACTACGATGGGGAATCCTCTATTGTAACTGTTTGACACTCCCGCTAGTTTTGATTTGTTTGCCAATTTAATGCACTTTTTAAGTGGGTTTTACTGAGAGAGACATCTCATATCCAGCTAAACTCACTAGACACACTGGACGAAGTCAAAACCCTGTCCATGGCCCGGTCGGGCTTCCAGAACAGCCGCTGTTCTCAGGTGAGCCTGACGGAACTATCAAGCCGGGCAAACCGGTTCTGTGTTCACTCTGCATAGCAGTCATTCTTCCACTACACTGGTTGGCTGCCAAGTATTTATCAGGAGTCTCCTGTAAGGATGTGCTTGAGTCACGTTCACTAAGAAGTATTTGTTTTATCTACGTCTCTGAAGCATAGTGAGTGATTTGTTATCTCTGAGCACTTATCAATACACACACCATAGGAATGAGAGGATAATGTAGTTAGAATATGTTCACATAAATTGTAGATTTGATTCTGACTGGACAGAATTGGATTTGAATTCGATTGAACCTTACTGTGCAGTCACCAATGTCTATTGATGTCAGTGGGGATACTGTTATTCTGCAATAGGACCTGGAATTTAATAACCGGAAAGACTGCTTGCTCGCCACACCTCAGTGACCATGTTGATTTGAGTTATGAACTGGTATTTTATGGCTCAATGACTGAAAGTAAGTTTTTACACTGGACTTGTTTGATGAGACTGGAATTGTACAAGTGCTTGTTGATTATGGCTTGTTCTGATCATTTTGTTCAAATGTTTTAAAAACATTGCACAATGTCAGTGTACACTTGATCAGAAAAATGAAAACATTTCTTTAATTTTGTTCATTGTAAGATTAATTGAATGTTACGTTTGAAGCATAAGAATAATTTAAATTGAGCTATTTCATTTTTTTCATGACATTAGTTTTAATTATTAATCTGGGGTGAGTCTACGTAATACTATTAATAAACGGTAGCATCATTGTGTGCCATCCCTAGTTCTGAATAGCTGACTTAATTCAGTTAATAATCACTTAGAATTATTTGTTTAACATATGTTGCCAAATGATTTGGTCAAGGGACACTGAATCCTCTGATATTTTCTGTTTTCTAATAAATGATAGTTATAATCCAAA

Function

NR:

description
tyrosine-protein kinase SRK2-like

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08892 FRK, PTK5; fyn-related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611762.2 True 3593 mRNA 0.43 8 17845718 17857814

Neighbor

gene id symbol gene type direction distance location
LOC110529515 LOC106571324 coding upstream 12508 17825436 ~ 17833210 (+)
LOC110529511 LOC106571328 coding upstream 144243 17682064 ~ 17701475 (+)
LOC110529193 NA coding upstream 163730 17680205 ~ 17681988 (+)
LOC110529507 LOC106571333 coding upstream 920030 16921776 ~ 16925688 (+)
LOC110529505 LOC106571335 coding upstream 924021 16893102 ~ 16921697 (+)
LOC110529519 LOC106571321 coding downstream 101337 17959151 ~ 18057345 (+)
LOC110531073 NA coding downstream 304891 18162705 ~ 18164856 (+)
LOC110529521 LOC106571319 coding downstream 416553 18274367 ~ 18311064 (+)
LOC118965599 LOC106571319 coding downstream 453093 18310907 ~ 18317600 (+)
LOC110529194 NA coding downstream 473733 18331547 ~ 18342108 (+)
G680295 NA non-coding upstream 9195 17836322 ~ 17836523 (+)
G680294 NA non-coding upstream 9653 17835748 ~ 17836065 (+)
G680240 LOC106607725 non-coding upstream 92981 17752317 ~ 17752737 (+)
G680235 LOC106571323 non-coding upstream 98277 17747207 ~ 17747441 (+)
G680202 LOC106571323 non-coding upstream 104397 17741093 ~ 17741321 (+)
G680502 NA non-coding downstream 288371 18146185 ~ 18146494 (+)
G680869 NA non-coding downstream 302447 18160261 ~ 18160885 (+)
G680871 NA non-coding downstream 303131 18160945 ~ 18161146 (+)
G680899 NA non-coding downstream 326034 18183848 ~ 18184071 (+)
LOC110529493 LOC106571284 other upstream 1457382 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 1459773 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 2585728 15258311 ~ 15260331 (+)
G676919 NA other upstream 2738575 15105603 ~ 15107143 (+)
G681909 NA other downstream 1306122 19163936 ~ 19165640 (+)
G682611 NA other downstream 1871019 19728833 ~ 19729671 (+)
G683669 NA other downstream 2705061 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 2769136 20626950 ~ 20632899 (+)
G683845 NA other downstream 2849244 20707058 ~ 20707371 (+)

Expression


Co-expression Network