XLOC_025743 (si:ch211-241f5.3)


Basic Information

Item Value
gene id XLOC_025743
gene name si:ch211-241f5.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52475058 ~ 52496765 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050608
ATGGTATCCAGCAATGGCACATGGTTTACTTCCCACTGGGACACAGCAACAGGAAAAGAATACATGGGCTTTTCAACAGTGGCTCTCCTCAGCTACACAGGTCTGGAAGAATCACTCAGCCGCTATTTTAACCATTTAGAGAAACAAgaaaagcaaacattcaaaatcAATTCAGAAATAGTAACTGCCACTGTTAGCAATGAAGACACTGCCAACCTGGAGAAACCAGTAAATTTCACGTTTTCGCACTTGAAGAAAGAGAATGTGAatcacatttgtgtgttttgGGATCATGATTTGGATGGGGGTGCCTGGTCGACCCGTAACTGCTCCACAGTGAGGTCCACTGCTGATGAGACGATCTGCTCCTGTTCTCACCTCAGCAGCTTCGCTGTGCTTATGGCTCTCTATGACATTGGGGACGTGTACGAGCTGCGTCTGATCTCATGGGTTGGACTGTCTCTGTCTCTGGTCTGCCTCCTCATCTGCATTATCACATTTTACGCGGTGCGATCCATCCAGAGCACACGCAACACCATCCACATGCACCTGTGCATCAGCCTCTTCATCGCATACTTTGTGTTCCTCGTGGGAATCACCCGCACTGAGAATAAGGTGGGCTGTTCAGTGGTTGCAGGTGTTCTGCATTACTTCTTCCTGGCTTCTTTCTGCTGGATGTGTCTGGAAGGAGTGCAGCTCTTCCGCATGGTGGTGCTGGTTTTCAACACCACACTGAGACACGTCTACATGTTTGCTGCCGGTTATGGAGTTCCTGCTCTTATCGTTGCCATTTCGGCCTCAGTGAATGCAAGCGGATATGGCACCCCGAACTActGTTGGCTCAACATTGACGATGGCTTCATCTGGAGCTTTTATGGGCcagtttgtattataattgttGTTAACGTGTTCTTCTTCCTCATAACAATATGGAAGCTGGCGGAGAAATTTTCTTCCCTCAACCCAGACTTAGACAATCTACGCAAAATTAAGGCGTTTACAGTCACTGCCATCGCTCAGCTCTGTGTTCTAGGCATCATGTGGGTCTTCGGCTGCTTTCAGTTTGACAGCACCTCTCTGGCAATGTCCTACATCTTCACTATTCTGGGCAGCCTGCAGGGGGTGCTCATGTTTATCATGCACTGCTGGCTCTCCAAACAAGTGAGAGACGAATATGCCAAATTCCTGTCATGTATTTGTGCACCACAGAAGAGGAAATATTCAGAGTTCAGCTCCAATCAGACAAGCAAATCACAGGTAAACTCATTCTCAGAAAACCTTTAA
>TCONS_00050609
AGCCTGCAGGGGGTGCTCATGTTTATCATGCACTGCTGGCTCTCCAAACAAGTGAGAGACGAATATGCCAAATTCCTGTCATGTATTTGTGCACCACAGAAGAGGAAATATTCAGAGTTCAGCTCCAATCAGACAAGCAAATCACAGGCCTCAAAGAGTGTTCAACACACTGGAGAATCCCAGATTTGACAGACAATATCAACATTCTGTTACTGCTATCGTCTGCCTGCTTTCTGTGGGtataagaaaatgttttttgtcttttatttcagAGGAGTTTTCTTTACTTGAGGGTCAACttaaggaaaagaaagaaatgacAGTTAAGAAATCTTTTTTATGGACATAGTAGTGTCGCTTTAATTATTtctttgtgctttttaaaatctcctttataatacatttataaatacgaCACATATTGTTTCAAAGCTTATAGTTCTTAagactttttctttttattaataattaaattatttgaatcAATGTGGGACCATGTCCGAGCACTCACTCTAGCTCACCCCAAGCTCTGTGTTGGTTTGAATTTTTACTATTGtgaaaataattgatttaaaactattttaatttgaatgtatttaacattttatttattgatgttgCAAAATCTGAATCTGAAAAGTTTTCA

Function

symbol description
si:ch211-241f5.3 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097680

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050608 False 1284 mRNA 0.47 9 52475058 52490051
TCONS_00050609 True 646 mRNA 0.33 3 52487695 52496765

Neighbor

gene id symbol gene type direction distance location
XLOC_025742 si:ch211-191c10.3 coding upstream 288 52473670 ~ 52474770 (+)
XLOC_025741 adgre5a coding upstream 3297 52467879 ~ 52471761 (+)
XLOC_025740 si:ch211-191c10.1 coding upstream 9462 52442102 ~ 52465596 (+)
XLOC_025739 NA coding upstream 82853 52390252 ~ 52392205 (+)
XLOC_025738 NA coding upstream 86019 52377578 ~ 52389039 (+)
XLOC_025744 ptger1c coding downstream 31841 52528606 ~ 52539663 (+)
XLOC_025745 slc27a1a coding downstream 48249 52545014 ~ 52603683 (+)
XLOC_025746 BX511096.1 coding downstream 123293 52620058 ~ 52620175 (+)
XLOC_025747 pgls coding downstream 187791 52684556 ~ 52700610 (+)
XLOC_025748 colgalt1 coding downstream 205935 52702700 ~ 52732034 (+)
XLOC_025429 BX649540.1 misc upstream 22226022 30248739 ~ 30249036 (+)
XLOC_025737 BX511132.1 non-coding upstream 95586 52367302 ~ 52379472 (+)
XLOC_025735 NA non-coding upstream 210912 52224103 ~ 52264146 (+)
XLOC_025731 NA non-coding upstream 574159 51895324 ~ 51900899 (+)
XLOC_025750 NA non-coding downstream 309507 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding downstream 332147 52828912 ~ 52829006 (+)
XLOC_025761 NA non-coding downstream 1030200 53526965 ~ 53652401 (+)
XLOC_025764 CU633748.1 non-coding downstream 1570758 54067523 ~ 54067639 (+)

Expression


Co-expression Network