LOC110529525


Basic Information

Item Value
gene id LOC110529525
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18461630 ~ 18464743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474401.2
caagaatgggctgccatcagtcaggatgtggcccagaagttaattgacagcatgccagggcggattgcagaggccttgaaaaagaagggtcaacactgcaaatattgactctttgcatcaacttaatGTAATTCTCAATAAAAGACTTTGAAACTTATGACATGCTTGAAAATtgcctgttatattaaattaagTATAATAAATCAGATTGTTTATATGAATAAacactgttactttatttggcccTTTACTGTTACTTTAATTGGCATTTGTCTTAATTTGACTTCTTGAGATGGAAAAACTTGTTTTTTTATCTAGTGTGTTATGAACGTGTTCTCTTTATGACAGAATATAAACTTTTTTGCATGGAACGACCCAGCTATATAACATTTGCTGGTAAGTTGGTGAGGTTTTTGTTtatgttgttgtatatattacTGTCTGAGATTTAGCCTGGACGATCCACATTCTATAATTCAcataggctgtgtttacacatgcagcctaattctgatcttctgcccaattattggcaaagaGCCGATCTGATTGTTCAAAAGCCCAATTAGTGGAGAAAGATAAGAATTGGGCTGCTTGTGTAAACACAGCTGAAGTAATGACTTTGATTTGGAGCCCATCCAAGACAGGATGTTAAAATCATGTCTTCTCACATAACTCGACAGGCCCAGATCCAGTGCACAGCAGGTGTCAGAGACGGTACATATGTCAGCAGCCCGTAAATCAAACGTGTCTCCTCTATAACCATCATTATAACCATTTTCCCCCTATGGAACCTCAGCAGGACCCTCACCAGTGCCCACTGTCCTTGTACACTAAACATTCCTACGCTGGTCTAACATCAGATTGTATTATTAGCCTATATTTTAGCGTTGTTATAGTCAACTAGCAAATGTTTCttcactttttggtgttttgtgggGCTCCAAACCCTGCTGCTGGGCATTAGAATATAAATTAAACTCTTCTACACATTTCCCTCTCTAGGACTCCCACGGCACAAACAGACTATATGGACAAGAAGCTCTAAAATCCTCCAGTCTAAATCTTCCTTAGTGTGTCGCCCCTCCCAGACAGGTGATGAGGGAGGTCAGTGTGGTGCCCTCCTACCCGGTGACCCCTGGCCAACCAGGTGGGGGAGGAACAGCTACACAGGAACTGAGGAAGACCATCAGTCTATCTGAGGAGTGCAGTAATTATGTATCAATGTCCATCCCTCAGCAAAACCAAGATCATTCATTTTTAGACATTAAAGATGATTGTTCATTAAACAGTGGACTTTCGGTGAATCACCCTAAGAATTCAATATTAGGACTTAAAACCACAAATATGTACAGTAAATATTTGCCTGAGCACAATTAGCTTCCATGTGGTACAATGCTTTGTTTGATCGCAGGAAATGTGTTCATTACATATTCTGTGGACACAGCCAGTGAGTTTTTTACCTTTGTGAAGTTTCTGACAGATCAGCGCTTTAAACCAGCTGTAAgttttctgttttattttattcACCCACTCTTTGAAATGTCTATTCAAACATACTTCCTCTCTCTGGCAGACTAACATCTTTGATAGCACGGTTAGAAGAATGGACATCAACAAGTGGTTGGACAGCTTTGTAAAGAATAAGTCAGTGCTGATCATCGTGGTCATCAGTCCCAAGTACAAGGCAGAcgtggaaagagatggagaggatgaGCATGGTCTCCACACAAAGTTCAGATCCAGAATGAGTTCATCCGACAGCGCTGCCTTCATTTAAAACTGGTACCGGTATTGTTTCCCACCTCTACGAAGAGATATGTTCCTGCCTGGCTTCAGAGCACCAGGATACACCACTGGCCCCCCTCTGGAACGCTACATTGGCCCCCCTCTGGGGAAAGAGCTGACCCTCTCCGTACGACACCTGTGACATCTCTGAGAACTGCTGAAGACACATTATGTTGTGGTGCTTCATAGATTTCAATGTTTATATGGAAATTTagtaaatgcttttttttttttttttactaaactGAACCGGTGTGGGAGTAGTGGTGTATCTCAGCACTACTCTCAAATAGCCACAAGGTGGCAGTATTTACTTTCTGATGTTTCAAGTCCTAGACTTGCTAAGGTGGTAATGGGTTACTCCTGACATTGTGTGGTCCTAATAATATGTGATCTGAAGATGTATTCTATTAATAAATGAAAGTAATAAGAGCTTGTTGACTGTGAGGTTGTTGATTTGCCATGataaacatgtttacattgttgCCTATACTACATAGTTACTACGGTAATACCCAGTACAACGTCAAGGTCTCACATTTTTGTGGGTAATACCAGATAAGTAGAACATGGTGTACAGGTGGATTTAGTGGCCTAAAGGTTAGCATGTATGATATTTGTTGacgatatttgtgcgtctgtaactatCCGTAataatggtagcatccacattaatgtggaaatgtttagaaacatgttctattctcatttacaataaaagtgactccaaaattacacaatacattatttgccATTAATTTATATTGGGAAAAACATAATCTGCACAAAAAGTGGTGTAATTTCttaacggttcacccgatatggatgacaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474401.2 True 2620 mRNA 0.40 4 18461630 18464743

Neighbor

gene id symbol gene type direction distance location
LOC118965607 NA coding upstream 2335 18457768 ~ 18459295 (+)
LOC110529195 LOC106571338 coding upstream 5417 18454978 ~ 18456213 (+)
LOC110529523 LOC106571317 coding upstream 12146 18362788 ~ 18449484 (+)
LOC110529194 NA coding upstream 119522 18331547 ~ 18342108 (+)
LOC118965599 LOC106571319 coding upstream 144030 18310907 ~ 18317600 (+)
LOC110529197 LOC106571315 coding downstream 4637 18469380 ~ 18582050 (+)
LOC110529529 cdk19 coding downstream 251316 18716059 ~ 18786106 (+)
trnaa-ugc-23 NA coding downstream 272267 18737010 ~ 18737083 (+)
LOC110529530 LOC106571309 coding downstream 341774 18806517 ~ 18876551 (+)
LOC110529536 LOC106571306 coding downstream 437492 18902235 ~ 18906394 (+)
G681084 NA non-coding upstream 114279 18338445 ~ 18347351 (+)
G680957 NA non-coding upstream 142281 18319047 ~ 18319349 (+)
G680956 NA non-coding upstream 142687 18318163 ~ 18318943 (+)
G680959 NA non-coding upstream 151678 18309150 ~ 18309952 (+)
G681167 NA non-coding downstream 9026 18473769 ~ 18473996 (+)
G681171 NA non-coding downstream 12543 18477286 ~ 18478291 (+)
G681174 NA non-coding downstream 16742 18481485 ~ 18481710 (+)
G681175 NA non-coding downstream 17855 18482598 ~ 18483066 (+)
G681177 NA non-coding downstream 29485 18494228 ~ 18494436 (+)
LOC110529505 LOC106571335 other upstream 1566795 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 2073294 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 2075685 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 3201640 15258311 ~ 15260331 (+)
G676919 NA other upstream 3354487 15105603 ~ 15107143 (+)
G681909 NA other downstream 699193 19163936 ~ 19165640 (+)
G682611 NA other downstream 1264090 19728833 ~ 19729671 (+)
G683669 NA other downstream 2098132 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 2162207 20626950 ~ 20632899 (+)
G683845 NA other downstream 2242315 20707058 ~ 20707371 (+)

Expression


Co-expression Network