LOC110529526 (LOC106571316)


Basic Information

Item Value
gene id LOC110529526
gene name LOC106571316
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18582163 ~ 18587994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611774.2
TGTACGCTGACGTCCATATTGTCATACACTTGACATATGGAACCACGGCTTTTACCACCCAGCCAACGTTCCCCATGTCCGATTCTTCAtgcaatgaatgaatgaatgaatgactcGAAAATATATCAGCAAGTGTCGTTAAAGGAACCGTCAGTGCGCGcagtttgtttaccaaacgcactGGCGCAAGCTTCCCAACCAGCAGGATACAGCGCAGCCATAATTTGACAGTTCGACCATGTCTGCCTCGGCCGCCAGAGATCCTGTTGTGAAAACGAAGCATGTTCGTTTCGCAAGAATGAAGGAGGATGATAATAACGATGACCAAGAGGAACATACTCTGTTTGACAAGAGGAAAGACACAAGGCGAGGGGTGAAGAGTGTAATgaaagggaggaaggagagtTCGAATTCGGGGTCCGATGGTGAGGTTGAAATCATCGGTGGAGTTAGCAGCGCCAGCGGTTCTGGAGGCTGCAGCGGCTGGATCATCACCATGGCGCTCTGTGCATCGTTCCTCGGACTGGGGATGAGTATCTCTGTTTTAGGCCCCACGTTTCAAGACCTGGCCATCAATGTCAACCAGGACATCAGCAATATCTCCTACATCTTCGTAGGCCGCTCAATGGGCTATATAGGCGGCTCTGTGTTGTCAGGGATTCTCTTTGACTGCATGAACAGCCTTCTTCTGCTGGGTCTTTCCATGTTGATCACAGCGTTTGGGATGTTTGCAATCCCTTTCTGTAAGACGGCCCTTCTCCTCACTGCTCTGATGTCCAGTATTGGAGTTTCTATGGGCTTTCTAGATACAGGTGGTAATGTCCTGATCTTGCAGACGTGGGGAGATCAGGCTGGCTCTCACTTGCAGGCCTTGCACTTCAGCTTCGCCGCAGGGGCCTTCGTTTCGCCCATCATCGCCAAGCTGCTCTTTGGAACAGACTTGGAGCTGGATGTGGCTACGAACGGCAGCATGGCAGCCCCGCCGGTAACATCGGCCTCCCCACCTGTCACAGACGATGTGTCCCAAACACAGTCCTCTTATACACCCAAACGCTATGTCCTCAGTAGCAGCACCCTCAAGTCCATGTGGGCCTACATTGTGATCAGTGGTTTCATCCTGTtaatctccctcctcttcttcatcctctacgcCCGCCACAGGCCCCCTCAGGGCAGGGCACAGACCCCCTCAGGGAAGCACCTGGTGTCAAAGCATCACAACGCACTCATCGCCAtgctctttgtcttcttcttctggtACGTGGGGGCCGAGGTGGCGTACGGCTCCTTTATCTTCACCTATGCTAAGGATTATATCCATATGGACGAGGCCCAGGCAGCAGGGCTCAACTCCCTGTTCTGGGGGACGTTCGCTGCCGGCCGGGGCCTGGCCATCTTCTTTGTGTCCTGCATGCAGCCAGGCACCATGATCCTACTGAGCCTGGTGGGCTGcaccctgtcctccctgttccTCACCCTCTTCAGCAGTAACAGGGTGGCCCTGTGGATCTGCACTGGTGTCTATGGTGCCTCCATGTCGACCACTTTCCCCAGTGGGATCTCCTGGGTGGAGCAGTACACCACAGTGACGGGGAGCTCGGCGGCGGTTTTCGTGGTGGGGGCAGCCCTGGGGGAGATGGTCCTGCCCGCTCTGATGGGCTTCCTGTTGGGGAGGATCCATGGTCACCCCCTGTTGATGTACCTGACCCTGGCCACCGCCACAATGACCTCCATCCTCTTCCCCTTCATGTTCTGGCTGGCCTCGTCCCCCAGCGGCCCCAGCAGGACACCCCGCATCAGGGGCCGCAAGGAGCCTGACGACAGTGAGTACCGCCAAGGCCTGCTGGACTCAGGAGCcaatgatgaggaagaggagcagcaggaggaTGACGAGGCAGACCAGTGGAATGACGCCGACTTTGAGGTAATCGAGATGGATGACGCCAGCCTTATAAACTCTCCGAATAAAGCATTGTTATCTCCTAATAAAGCGCTCTCTTTATCTCCTAATAAAGCGTTGTCATCTCCTAACAAAGGGCTCCCACCACCTGATGTTACGGGGACATCAGGCGACCTCAGTGCCACATCTGTCCCCTCTACTGCCCAGTCCCTAGAGCCCACAGTTGGGACCTCTTTTTCAGACTCTCCCGCTCTGCTGGGGGACTCACCCGGACAGAAAATGCTGCTTTCCCTGGACCGGGAAAAGAGGGACTAGGGGCTTTATTCAAACCATATCGTGGAAATtcagcgtgattgaaatttaaaggcaatgttcccacatTAGCAGAGAatacattcacggtaaacgctgcataaaTCAGCTCAATCCAAAAGTACTTTGACATTTCTAGTGCGCAATCGGTAACGCTTCAGCGATACACATTGAAGAGCCCTAAACCTGGGTGGGATTCAATCCAATTGCGTTTTGTCCGCAATGGTCCTTTAAAGGCATTGTTCCCTCGTTCGCGGAGACCgcattcacagtaaacgctgcatatgtcggatAAATCGGAAATTAACTTTTTAGTGGCAGTCACGAAGTGCAATCGGAATGAATCACGCCTAGGGGTTCTAGTCTGGGTGTGAAATGCACCATGAGTGCTGTAAAGACATTACAATAAGTACTTCATATATTAGTATTCTACAAGAGCCATGTCTCCCTCTCGAGAGAAACTTGtttgttaatgtctggttgtttgTCATGTGCTTCTTTAGCTTGTTAACACTCACATGTAAGGGCTCTATTTAATCTGGatcgctgaagcgttacagattgcgCAATAGAAATGCCAAGGTAATTTCCGATGGtaccgacatatgcagcgttgaCCGTGAATGCAGCCTTCGctaacgcgggaacattgcctttaaatttcaatcataACTTCCCGCAAtatggattgaatagagcccaaaATGTTTGATACTACAGATTTACCCCACAGTTTATGTCTACTACGTTATTTGAGGCTGTGTTTAGGGAGAAAGTTAGGCCTCTTACAACGGTTGCTGGTAATGAATGATAAAAGTAGGAATACTGAAGAATCACCAACGTAACACTGAAAATAGGTTCCTTTAGATATCTTGGATGTCATTTTCTTTGTCATTCATATTTAGTAATATGTGAATTATCAGCAGTTAAAGATAGGATGTTAGCCACCAATGTGGCCTGACTATGAATTATGTTTTTGTCAGACCTTTGAATGAAGTTTGTTttctgcaacaaaaaaaaatctatttaaaaaaatCATTTAGAAGTGT
>XM_021611776.2
TGTACGCTGACGTCCATATTGTCATACACTTGACATATGGAACCACGGCTTTTACCACCCAGCCAACGTTCCCCATGTCCGATTCTTCAtgcaatgaatgaatgaatgaatgactcGAAAATATATCAGCAAGTGTCGTTAAAGGAACCGTCAGTGCGCGcagtttgtttaccaaacgcactGGCGCAAGCTTCCCAACCAGCAGGATACAGCGCAGCCATAATTTGACAGTTCGACCATGTCTGCCTCGGCCGCCAGAGATCCTGTTGTGAAAACGAAGCATGTTCGTTTCGCAAGAATGAAGGAGGATGATAATAACGATGACCAAGAGGAACATACTCTGTTTGACAAGAGGAAAGACACAAGGCGAGGGGTGAAGAGTGTAATgaaagggaggaaggagagtTCGAATTCGGGGTCCGATGGTGAGGTTGAAATCATCGGTGGAGTTAGCAGCGCCAGCGGTTCTGGAGGCTGCAGCGGCTGGATCATCACCATGGCGCTCTGTGCATCGTTCCTCGGACTGGGGATGAGTATCTCTGTTTTAGGCCCCACGTTTCAAGACCTGGCCATCAATGTCAACCAGGACATCAGCAATATCTCCTACATCTTCGTAGGCCGCTCAATGGGCTATATAGGCGGCTCTGTGTTGTCAGGGATTCTCTTTGACTGCATGAACAGCCTTCTTCTGCTGGGTCTTTCCATGTTGATCACAGCGTTTGGGATGTTTGCAATCCCTTTCTGTAAGACGGCCCTTCTCCTCACTGCTCTGATGTCCAGTATTGGAGTTTCTATGGGCTTTCTAGATACAGGTGGTAATGTCCTGATCTTGCAGACGTGGGGAGATCAGGCTGGCTCTCACTTGCAGGCCTTGCACTTCAGCTTCGCCGCAGGGGCCTTCGTTTCGCCCATCATCGCCAAGCTGCTCTTTGGAACAGACTTGGAGCTGGATGTGGCTACGAACGGCAGCATGGCAGCCCCGCCGGTAACATCGGCCTCCCCACCTGTCACAGACGATGTGTCCCAAACACAGTCCTCTTATACACCCAAACGCTATGTCCTCAGTAGCAGCACCCTCAAGTCCATGTGGGCCTACATTGTGATCAGTGGTTTCATCCTGTtaatctccctcctcttcttcatcctctacgcCCGCCACAGGCCCCCTCAGGGCAGGGCACAGACCCCCTCAGGGAAGCACCTGGTGTCAAAGCATCACAACGCACTCATCGCCAtgctctttgtcttcttcttctggtACGTGGGGGCCGAGGTGGCGTACGGCTCCTTTATCTTCACCTATGCTAAGGATTATATCCATATGGACGAGGCCCAGGCAGCAGGGCTCAACTCCCTGTTCTGGGGGACGTTCGCTGCCGGCCGGGGCCTGGCCATCTTCTTTGTGTCCTGCATGCAGCCAGGCACCATGATCCTACTGAGCCTGGTGGGCTGcaccctgtcctccctgttccTCACCCTCTTCAGCAGTAACAGGGTGGCCCTGTGGATCTGCACTGGTGTCTATGGTGCCTCCATGTCGACCACTTTCCCCAGTGGGATCTCCTGGGTGGAGCAGTACACCACAGTGACGGGGAGCTCGGCGGCGGTTTTCGTGGTGGGGGCAGCCCTGGGGGAGATGGTCCTGCCCGCTCTGATGGGCTTCCTGTTGGGGAGGATCCATGGTCACCCCCTGTTGATGTACCTGACCCTGGCCACCGCCACAATGACCTCCATCCTCTTCCCCTTCATGTTCTGGCTGGCCTCGTCCCCCAGCGGCCCCAGCAGGACACCCCGCATCAGGGGCCGCAAGGAGCCTGACGACAGTGAGTACCGCCAAGGCCTGCTGGACTCAGGAGCcaatgatgaggaagaggagcagcaggaggaTGACGAGGCAGACCAGTGGAATGACGCCGACTTTGAGGGCTCCCACCACCTGATGTTACGGGGACATCAGGCGACCTCAGTGCCACATCTGTCCCCTCTACTGCCCAGTCCCTAGAGCCCACAGTTGGGACCTCTTTTTCAGACTCTCCCGCTCTGCTGGGGGACTCACCCGGACAGAAAATGCTGCTTTCCCTGGACCGGGAAAAGAGGGACTAGGGGCTTTATTCAAACCATATCGTGGAAATtcagcgtgattgaaatttaaaggcaatgttcccacatTAGCAGAGAatacattcacggtaaacgctgcataaaTCAGCTCAATCCAAAAGTACTTTGACATTTCTAGTGCGCAATCGGTAACGCTTCAGCGATACACATTGAAGAGCCCTAAACCTGGGTGGGATTCAATCCAATTGCGTTTTGTCCGCAATGGTCCTTTAAAGGCATTGTTCCCTCGTTCGCGGAGACCgcattcacagtaaacgctgcatatgtcggatAAATCGGAAATTAACTTTTTAGTGGCAGTCACGAAGTGCAATCGGAATGAATCACGCCTAGGGGTTCTAGTCTGGGTGTGAAATGCACCATGAGTGCTGTAAAGACATTACAATAAGTACTTCATATATTAGTATTCTACAAGAGCCATGTCTCCCTCTCGAGAGAAACTTGtttgttaatgtctggttgtttgTCATGTGCTTCTTTAGCTTGTTAACACTCACATGTAAGGGCTCTATTTAATCTGGatcgctgaagcgttacagattgcgCAATAGAAATGCCAAGGTAATTTCCGATGGtaccgacatatgcagcgttgaCCGTGAATGCAGCCTTCGctaacgcgggaacattgcctttaaatttcaatcataACTTCCCGCAAtatggattgaatagagcccaaaATGTTTGATACTACAGATTTACCCCACAGTTTATGTCTACTACGTTATTTGAGGCTGTGTTTAGGGAGAAAGTTAGGCCTCTTACAACGGTTGCTGGTAATGAATGATAAAAGTAGGAATACTGAAGAATCACCAACGTAACACTGAAAATAGGTTCCTTTAGATATCTTGGATGTCATTTTCTTTGTCATTCATATTTAGTAATATGTGAATTATCAGCAGTTAAAGATAGGATGTTAGCCACCAATGTGGCCTGACTATGAATTATGTTTTTGTCAGACCTTTGAATGAAGTTTGTTttctgcaacaaaaaaaaatctatttaaaaaaatCATTTAGAAGTGT
>XM_021611775.2
TGTACGCTGACGTCCATATTGTCATACACTTGACATATGGAACCACGGCTTTTACCACCCAGCCAACGTTCCCCATGTCCGATTCTTCAtgcaatgaatgaatgaatgaatgactcGAAAATATATCAGCAAGTGTCGTTAAAGGAACCGTCAGTGCGCGcagtttgtttaccaaacgcactGGCGCAAGCTTCCCAACCAGCAGGATACAGCGCAGCCATAATTTGACAGTTCGACCATGTCTGCCTCGGCCGCCAGAGATCCTGTTGTGAAAACGAAGCATGTTCGTTTCGCAAGAATGAAGGAGGATGATAATAACGATGACCAAGAGGAACATACTCTGTTTGACAAGAGGAAAGACACAAGGCGAGGGGTGAAGAGTGTAATgaaagggaggaaggagagtTCGAATTCGGGGTCCGATGGTGAGGTTGAAATCATCGGTGGAGTTAGCAGCGCCAGCGGTTCTGGAGGCTGCAGCGGCTGGATCATCACCATGGCGCTCTGTGCATCGTTCCTCGGACTGGGGATGAGTATCTCTGTTTTAGGCCCCACGTTTCAAGACCTGGCCATCAATGTCAACCAGGACATCAGCAATATCTCCTACATCTTCGTAGGCCGCTCAATGGGCTATATAGGCGGCTCTGTGTTGTCAGGGATTCTCTTTGACTGCATGAACAGCCTTCTTCTGCTGGGTCTTTCCATGTTGATCACAGCGTTTGGGATGTTTGCAATCCCTTTCTGTAAGACGGCCCTTCTCCTCACTGCTCTGATGTCCAGTATTGGAGTTTCTATGGGCTTTCTAGATACAGGTGGTAATGTCCTGATCTTGCAGACGTGGGGAGATCAGGCTGGCTCTCACTTGCAGGCCTTGCACTTCAGCTTCGCCGCAGGGGCCTTCGTTTCGCCCATCATCGCCAAGCTGCTCTTTGGAACAGACTTGGAGCTGGATGTGGCTACGAACGGCAGCATGGCAGCCCCGCCGGTAACATCGGCCTCCCCACCTGTCACAGACGATGTGTCCCAAACACAGTCCTCTTATACACCCAAACGCTATGTCCTCAGTAGCAGCACCCTCAAGTCCATGTGGGCCTACATTGTGATCAGTGGTTTCATCCTGTtaatctccctcctcttcttcatcctctacgcCCGCCACAGGCCCCCTCAGGGCAGGGCACAGACCCCCTCAGGGAAGCACCTGGTGTCAAAGCATCACAACGCACTCATCGCCAtgctctttgtcttcttcttctggtACGTGGGGGCCGAGGTGGCGTACGGCTCCTTTATCTTCACCTATGCTAAGGATTATATCCATATGGACGAGGCCCAGGCAGCAGGGCTCAACTCCCTGTTCTGGGGGACGTTCGCTGCCGGCCGGGGCCTGGCCATCTTCTTTGTGTCCTGCATGCAGCCAGGCACCATGATCCTACTGAGCCTGGTGGGCTGcaccctgtcctccctgttccTCACCCTCTTCAGCAGTAACAGGGTGGCCCTGTGGATCTGCACTGGTGTCTATGGTGCCTCCATGTCGACCACTTTCCCCAGTGGGATCTCCTGGGTGGAGCAGTACACCACAGTGACGGGGAGCTCGGCGGCGGTTTTCGTGGTGGGGGCAGCCCTGGGGGAGATGGTCCTGCCCGCTCTGATGGGCTTCCTGTTGGGGAGGATCCATGGTCACCCCCTGTTGATGTACCTGACCCTGGCCACCGCCACAATGACCTCCATCCTCTTCCCCTTCATGTTCTGGCTGGCCTCGTCCCCCAGCGGCCCCAGCAGGACACCCCGCATCAGGGGCCGCAAGGAGCCTGACGACAGTGAGTACCGCCAAGGCCTGCTGGACTCAGGAGCcaatgatgaggaagaggagcagcaggaggaTGACGAGGCAGACCAGTGGAATGACGCCGACTTTGAGCGTTGTCATCTCCTAACAAAGGGCTCCCACCACCTGATGTTACGGGGACATCAGGCGACCTCAGTGCCACATCTGTCCCCTCTACTGCCCAGTCCCTAGAGCCCACAGTTGGGACCTCTTTTTCAGACTCTCCCGCTCTGCTGGGGGACTCACCCGGACAGAAAATGCTGCTTTCCCTGGACCGGGAAAAGAGGGACTAGGGGCTTTATTCAAACCATATCGTGGAAATtcagcgtgattgaaatttaaaggcaatgttcccacatTAGCAGAGAatacattcacggtaaacgctgcataaaTCAGCTCAATCCAAAAGTACTTTGACATTTCTAGTGCGCAATCGGTAACGCTTCAGCGATACACATTGAAGAGCCCTAAACCTGGGTGGGATTCAATCCAATTGCGTTTTGTCCGCAATGGTCCTTTAAAGGCATTGTTCCCTCGTTCGCGGAGACCgcattcacagtaaacgctgcatatgtcggatAAATCGGAAATTAAC

Function

NR:

description
sodium-dependent glucose transporter 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611774.2 False 3261 mRNA 0.50 4 18582163 18587994
XM_021611776.2 False 3149 mRNA 0.50 5 18582163 18587994
XM_021611775.2 True 2429 mRNA 0.54 5 18582904 18587994

Neighbor

gene id symbol gene type direction distance location
LOC110529520 marcs coding downstream 509569 18069152 ~ 18072594 (-)
LOC110529517 nt5d1 coding downstream 746612 17756253 ~ 17835551 (-)
LOC110529514 LOC106571323 coding downstream 826122 17728290 ~ 17756041 (-)
LOC110529513 LOC106571326 coding downstream 858290 17720967 ~ 17723873 (-)
LOC110529512 LOC106571327 coding downstream 861968 17706609 ~ 17720195 (-)
LOC110529198 LOC106571314 coding upstream 824 18588818 ~ 18674196 (-)
LOC110529527 LOC106571313 coding upstream 88614 18676608 ~ 18687665 (-)
LOC110529528 LOC106571312 coding upstream 102457 18690451 ~ 18714820 (-)
LOC110529532 LOC106571305 coding upstream 288740 18876734 ~ 18883562 (-)
LOC110529199 ppil4 coding upstream 301102 18889096 ~ 18895190 (-)
G681525 LOC106607739 non-coding downstream 39515 18542190 ~ 18542648 (-)
G681517 NA non-coding downstream 55890 18526048 ~ 18526273 (-)
G681508 NA non-coding downstream 74671 18507290 ~ 18507492 (-)
G681507 NA non-coding downstream 76897 18504999 ~ 18505266 (-)
G681504 NA non-coding downstream 86723 18495120 ~ 18495440 (-)
G681562 NA non-coding upstream 4603 18592597 ~ 18592906 (-)
G681586 NA non-coding upstream 38730 18626724 ~ 18629798 (-)
G681658 NA non-coding upstream 200071 18788065 ~ 18789040 (-)
G681657 NA non-coding upstream 207580 18795574 ~ 18796382 (-)
G679471 NA other downstream 1467635 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 1951904 16625090 ~ 16630259 (-)
G679087 NA other downstream 2149149 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 4065635 14508329 ~ 14516528 (-)
G676178 NA other downstream 4293818 14287849 ~ 14288345 (-)
G681659 NA other upstream 203236 18791230 ~ 18792137 (-)
G684844 NA other upstream 2890772 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 3332433 21920427 ~ 21926307 (-)
G685953 NA other upstream 3571036 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 5028913 23614938 ~ 23659111 (-)

Expression


Co-expression Network