LOC110529528 (LOC106571312)


Basic Information

Item Value
gene id LOC110529528
gene name LOC106571312
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18690451 ~ 18714820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611778.2
GTGAATAAAACCAATACGCGTCCCCTTTTCTGCGCTTTACACAGTATGGCCGGCGATATTAGCTAGCACTTGCTTTACAGTATTCTCTGTAAAAGGGAAGACGGTTAAACCAAGAAATTACACCTGGATTGCTAAAGGACTGTACTTAATAAATTATAACGATCAAACAAGGGCTAATTCAATTGGAAACGTAACCGACGTTTAATTTCTGTTGGTGTCTGTTAACTCACGATGGAAGCGAACGGTGCACACTTCTTCGAGGGAACCGAGAAGCTGTTGGAGGTGTGGTTCTCCCGGCAAGATGAGATCAAAGGAACAGGGGACCTCCGTACCATCCCAAGGTTTGAGTGGGACAAACTTCTGGAGAATGTGCACTGTTTGATCATAAGTGTGACAAAGACCGACAAGCAGGAAGCTTATATACTCAGTGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAGACGTGTGGAACCACCCTCTTACTGCAAGCACTGATGCCTCTGCTGGAACTGGCCAGGGAGTACTGTGGCTTTGATGCTATCGAGAATTTCTTCTATTCTCGCAAGAACTTCATGAAGCCTACCCATCAGGAGTTCCCTCATCGGAACTTCCAggaggaagtggaatttctcagccAGATTTTCCCAAATGGAGCAGCGTACTGTATGGGACGTTTGAATTCTGATTGCTGGTACCTGTTTACTCTGGATTTGCCAGAGTTCTGGGAGAATAAGCACGCAGATCAGACGCTGGAAGTTCTGATGAGTGACCTTGATCCAGCAATTATGGATCAGTTCTTCATGAAAGACGGTGTTTCTGCAAATGATGTCACTCGTATGAGTGGAATTCGTGACCTGATACCAGGTTCTGTGATTGACGCCACAATGTTCAACCCTTGTGGATACTCAATGAATGGAATGAAGACTGACGGAACTTACTGGACGATTCACATCACTCCAGAGCCAGAGTTCTCCTATGTCAGCTTCGAAACCAACCTCTCTCAAACATCCTACGATGATTTGGTCAGGAAAGTTGTGGACATCTTTAAGCCAGGAAAATTTGTGACTACGCTGTTTGTTAACCAGAGCTCCAAATGTCGCAGTGTCTTTTCTTCCGCCCAGAAACTTGAGGGGTACAAGCGCCTCGACCGCCAGTTGGCCCAATTCAACGATTACAATTTTGTCTTTACCAGTTACGCCAAGAGCCACCAGCAGAGTTGAGGATTAAGAATgaaaaagagaaaaaagaaaCACTGCCACATAGCAGGGCGATGTCCCCACTGCGGCCATCTCTCTGCCCGAGCAGAGAGGCACAGTCCCCTTTGCTGCCATTGTTATTCAGGATTTATTGGTTCCGACAAGGCCGCAGGCCCTACTAGTGTAACCTCCAGTTTGAATTGTTGTACCTATAACTTAGATCTCTTGCATGAAAGCTCTCTTCTCTGTTTAGATATTCTAGCTCACTCTTGCTGTGATCTTGAAGTGCATGTAGAGGATTTAAACACTCTCTGTTTGTTGCTGGCCAGCCTTGCCTCCTTGCTGCAAGTCTCCCCCCTCATTCCCCACAGACAGGGCTTCCGCTCCCACTAGTCCAGGGCCCTGACATGCTCAGATGGGTCCACTATTTTGTGCTTACCGACAGTTGAAACACGCCTCCCCACACACTCTTCCTTCCTCAACTGATCTGCTGCTTCATCGATCTGTTGCCAGTTTGTATCCTTTTTGGTTTTGACTTTTGAGTGCACTTTAAGAACACATTGTTTTCAGCCAACTGGAGCAGGACTCCTCAATACCAAAACAGGAAACGGCAACCCTTTTTTTGTCTTCTAGAATGTTCATGACTTTGGTCTTTTATTGAGTGATTAGAAGCATGTGAGCTTTGGGCCATATAGCATAATTTGTCAATTAACGTCGGAGTCTATCTAATGAATTCCTTAAATCAAAATGCCATACTTTATTAGCTTTGCACTACTAGAGGATTGGCTAGAGGCTGACCGCTAGGTCAACATCTAGTTGTTCTTGGCAGTAAACTGCACTGCAGCCAAAGGAATTCCTGCTAGAATTGGGTCAGAATGCCAAATCTGGCATGCTTCTCTCCACCCTGACAATCATTTAGCTGTTGAATGTGTCCTCAAATGGACAGGCTTTAAACTTGTCCCAGACAATAGTATGAGCAAATCATTTAGGATGTCCAGTTGGGTACATCACGGTATGGAATGTGTAATATATGCATTCTTATACCCAGGCTcattctacagtatactgtaccaaCAAGATGGCTTTGGTGGTTAGAATTCCCTGTGGTTTTAAACTCATGTATGCATTCGTGAAAATATTGATTTACAAACAAACATCCAAACTTAAATGGAAGAATCAGTCGCGTAAGAATGAAGGCTGTGCAAACTGTGGTTCTAGAGGGCGTTGTTTAGACTAGAGGAGCCAGTTAAAGTGTTTTATATCTGAATGTTAATTGCAAGGAGACCTAGTAGACCCTTTGTAGCTGTGGTGTGGGCCAGAACTGCCCTCTGCTGTCCAGCATGGTCAGCCATTGTCGTTCCGCCCACCCCGTTGATATTTGAAACTAAGGGGTAGGGACGTCCCTAGGATCCTGCATagcactaccccccccccccccccccccccctcccccaatatAGCAGACACTGTCATCTGGCCCCAGAACCATGCTTGACATAGGTGCTGATGGCTGCACAGTGTGGCCCTGAATGGAAATAACGAATCACACTCTGCTTAGTACAGTTGTGGCCCAGCAAAGCATTTTCTTTTTCTAAACAATGTACCCCCCCATACAGGAGTCGGTAAGCACACAATAGAGGCCCACCAATCTGAGCATGCCAGGGTGATCCCGGATCATTCCACACAACTGTTGCATAAACTGCCATTTTATAAATGTTATTGTGGGCAGGCATTTTGCAGTGAATTGGTCCAAAATGTGACTTCATTGCAGTTTTTTTGGCGTACCATCAATGCCCTTTTGTTTAGTGAGAAAAATCCTGTGGCACAGGTGACTACTAGTTCTGTATTGCTTGACAGTGTAGTGTGCTGCTGTCAGTTTCTCCTGTGTAAGTAGATCAATGTGCTTCACCTTGTTTAATCAGCTCATGTACTGGGGCATTCTGATTTATTGAGCAGGTGGGATGGGGGTTAATACATATTTGTTTAAATAACATGCATACATACAGCCACCTTACAGTGCTGAAGGCATGCCCTCCATCTGGTTAGTATACAGACAGAGGTTTGTAATTTGAGAGCGGATTTTGATAGGATGTTGAGGATTGTTCTCCATTGGCTGGTCAGTAATGTTCATGATGCTTCTCCTGCCAGCGAATGCAGATTGAGTTTAATTTGCAGACAGCTGGGGTGGACAGGACTTTATTTTTTTGGGACTGTGATTTCGGGCCTGCCTTCAGAACTCCTGGAGGTTATAACTGGTTATAACTGGTGCTGCGTTGCCCAGCTAGTTTAGAAGGCCCTTAGAACATCGGAGACCATCACATGATGGTATACTGTATTTAACAGAAAATTGGGCTTTCTTTAAACTGAATGTGACAGACATAACAAGCGGACCACTAGAATGAGTACTTCAGTTCATGTAAGGACCTGGGCAAAGTTGACAATTGGAACAACTTGCCTCCAGTACATCTGTGGCTTTTGGAATGGTTtagcttttattttttttcctgaggACCAACTTTGGCCGATAGTCTTTATCTGAAATGTTATGACTCATGTCTGAGtgaccagcctccactgttctagGAGCTGTATTGACTGGTTTAGGGAATAGACACCAGCACTGTTCACAAATAAAGGTAACTTTTGATTGCTTTTGGGTCAAGTCCTATTTGGACTTGATCTGGGTAGTCCTGTTGGTTTAACTTATTTTTTATTAAAGTCTAATTCTTTGTTTTTCTCAATACCATTTTTACAAACATTTTTGTAAGAAATGCATTTTTGCCTACTTCCAACTTTGTTTGTTTACCTTTTTTGTCGTAAAACCAGTGTTCCAGATGTATTTGTTCTGAAGCTGAGGGGATTTTTATTTTCTAAACAAGCTAATTTCATCATGTATTTTGTTTGCCTTACCAAGGAAAAGGTCAACTCCCCTGATGTGAGAGGGTGCAATTGCAGGATGTACTGAAGGGAAAATGTTTGCTGTTGTAACTCTTTTGCTGTTCTTTGGATGGTCAAGATGTGCTAAATGTATCTGTACTCTGAGCTTGATGctttaataataaaaatataGCTCTTTC

Function

NR:

description
S-adenosylmethionine decarboxylase proenzyme-like

GO:

id name namespace
GO:0006597 spermine biosynthetic process biological_process
GO:0008295 spermidine biosynthetic process biological_process
GO:0006557 S-adenosylmethioninamine biosynthetic process biological_process
GO:0004014 adenosylmethionine decarboxylase activity molecular_function

KEGG:

id description
K01611 speD, AMD1; S-adenosylmethionine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611778.2 True 4283 mRNA 0.44 9 18690451 18714820

Neighbor

gene id symbol gene type direction distance location
LOC110529527 LOC106571313 coding downstream 2786 18676608 ~ 18687665 (-)
LOC110529198 LOC106571314 coding downstream 16255 18588818 ~ 18674196 (-)
LOC110529526 LOC106571316 coding downstream 102457 18582163 ~ 18587994 (-)
LOC110529520 marcs coding downstream 617857 18069152 ~ 18072594 (-)
LOC110529517 nt5d1 coding downstream 854900 17756253 ~ 17835551 (-)
LOC110529532 LOC106571305 coding upstream 161914 18876734 ~ 18883562 (-)
LOC110529199 ppil4 coding upstream 174276 18889096 ~ 18895190 (-)
LOC110529535 katna1 coding upstream 191468 18904660 ~ 18913467 (-)
LOC110529533 LOC106571304 coding upstream 198890 18913710 ~ 18922072 (-)
LOC110529538 LOC106571302 coding upstream 207413 18922233 ~ 18924820 (-)
G681586 NA non-coding downstream 60653 18626724 ~ 18629798 (-)
G681562 NA non-coding downstream 97545 18592597 ~ 18592906 (-)
G681525 LOC106607739 non-coding downstream 147803 18542190 ~ 18542648 (-)
G681517 NA non-coding downstream 164178 18526048 ~ 18526273 (-)
G681658 NA non-coding upstream 73245 18788065 ~ 18789040 (-)
G681657 NA non-coding upstream 80754 18795574 ~ 18796382 (-)
G681672 NA non-coding upstream 84407 18799227 ~ 18799495 (-)
G681674 NA non-coding upstream 86943 18801763 ~ 18801963 (-)
G681675 NA non-coding upstream 90147 18804967 ~ 18805260 (-)
G679471 NA other downstream 1575923 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 2060192 16625090 ~ 16630259 (-)
G679087 NA other downstream 2257437 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 4173923 14508329 ~ 14516528 (-)
G676178 NA other downstream 4402106 14287849 ~ 14288345 (-)
G681659 NA other upstream 76410 18791230 ~ 18792137 (-)
G684844 NA other upstream 2763946 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 3205607 21920427 ~ 21926307 (-)
G685953 NA other upstream 3444210 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 4902087 23614938 ~ 23659111 (-)

Expression


Co-expression Network