LOC110529529 (cdk19)


Basic Information

Item Value
gene id LOC110529529
gene name cdk19
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18716059 ~ 18786106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611779.2
CATTAAGCGGAGCAGACCAAAATCCCAAACAAGGAAATGGTGGGGGAATAAAACGACCATATTATTTAATTAATGCATGTTAtaattaatattttattttattgtaaaTTAAGAAATATTTATGGGTTCAAATGGATTACGACTTCAAAACAAAGCTCGCAGCCGAACGAGAGAAGGTAGAAGATCTGTTCGAATATGAAGGTTGCAAAGTGGGTCGAGGCACCTACGGGCACGTTTATAAAGCTAAGCGCAAAGACGGGGAAGATGAGAAGGAATATGCACTGAAACAAATTGAAGGCACTGGAATATCGATGTCTGCTTGCAGGGAAATCGCTCTGTTACGAGAACTGAAACACCCCAACGTGATCGCCCTGCAGAAAGTGTTCCTGTCTCACAGTGACAGAAAGGTGTGGCTCCTCTTTGACTATGCTGAGCACGACCTCTGGCACATCATCAAGTTCCACCGTGCCTCTAAGGCCAATAAAAAGCCCATACAGCTGCCGAGAGGCATGGTCAAGTCTCTCCTGTATCAGATTCTGGACGGGATCCATTACCTCCATGCCAACTGGGTGCTTCACAGGGATCTGaaaCCAGCCAACATTCTGGTTATGGGGGAGGGCTCAGAACGAGGGCGAGTGAAAATCGctgacatgggcttcGCCAGACTCTTCAACTCTCCTCTCAAACCCCTGGCAGACCTTGACCCCGTTGTGGTGACATTTTGGTACAGGGCCCCTGAGCTTCTGCTAGGGGCCAGACATTACACCAAAGCAATCGACATTTGGGCGATTGGCTGCATCTTTGCGGAGCTGCTGACATCGGAGCCCATATTCCACTGTCGCCAGGAGGACATTAAGACCAGCAACCCCTTCCACCACGACCAGCTGGACAGGATATTCAGTGTCATGGGCTTCCCAGCAGATAAAGATTGGGAAGACATCAGGAAGATGCCAGAGTTCCCCACCCTTCAGAAAGACTTCAGGAGAACGACGTATGCAAATAGCAGTCTAATCAAATACATGGAGAAGCATAAAGTCAAACCTGACAGCAAGGTTTTCCTGTTGCTCCAGAAACTCCTTACAATGGACCCCACTAAAAGGATTACGTCTGAACAGGCACTACAGGACCCATATTTCCTGGAGGATCCCTTACCAACCTCAGATGTATTTGCCGGATGTCAGATACCTTACCCAAAACGAGAGTTTCTAAACGAAGATGAGCCagatgagaaaacagagaagAACCAGGTCCAACAGCACCAGCAGACGacagcccaggcccaggcccaGGCCCAGCAGCAGAGTGGCACCCAGCAGGCTTCTAACCAGCAGAGCTCCACCCAGACCAACGGCAATGCAGGGGCCACTGGAGCCAACTCCGGGGGAGGCCTACAGCACGGCCAGGACCAGGGGCCCCCCAACAAGAAATCTCGCACCGGGCCCTCAGGAGCCTCCTCAGGCACTGGGATCCACCAGCACTCCAGCTCCCGCCTTGGTTACCAAAGCAACATCCAAGGTTCCACTCAGTCCCAGGGATACTCGTCGTCATCCCAGCAGAGCTCACAGTACTCACACCAGCCACACCGCTACTGAGGCTCTTAGAACAGGCCAGGGGCCTCTCCCAAACCAACCCTCGACCAAAAACAAACCTTAGCATAacctctcacctccctctggCCAAGGTATTACTGACTCCTCATCCTGATCAAACCTCATTATGTGTCAGATAATTCcaacaacacaacagtcactcaTTATCCACCTTCATGTCAGCCCTACTACACTGACTGACCCTGGCCTCACTTCCAGCCAATGTCCTCACACTTACTCACCCGAGGGCACTGCAATATGAAGGTCAACTCAACATAGGAACCAAAAACAAACCCTGCCTCCTTGAGGGGTAGGACAAGATTTTCTATTATCATCAAGTGGCAAAATCGATTGATACTAGATAAGAAGGAAACACGTCAGGTGCAACTGACTACACAACACAAAGACTATGAACCATGACACTTACAAAAACATGTTCTTCAAGAGGAAGAATTGCAGCTCTgttcatatataaatatatactatataatacctttttttatttgtttaacaagAGACTTGTTTTTGCTCGTTTGCTATGTAGAGTTTGTTTACTTTGATTGTGGATGTTTTTGTAAATATTGTTCGATATAGAAGAAGATGGGATGAAACAGGAAAATAGCCCTTTACTGTCATCACTTTCCTTCACTGTACAGTTGTTTACCCTGGATTTCTGTTACCAATAACAATTGAATCAAAAGGAAGAAAATGAGCCAATCCTTTCCTGATGACAAAAGATCTTCTACTGAGATCTTCCCCTTGGCTTGGAAATACATTTGTACAGAAGAAAGTTAGCTCTTTAGCTGATGTGATTGCAGGGAATTACGAAATACACCATTTTATCTTAATCTTGTTATAAAAAACGTTTGTTTTCTCAA

Function

symbol description
cdk19 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 87. Orthologous to human CDK19 (cyclin dependent kinase 19).

NR:

description
cyclin-dependent kinase 19-like

GO: NA

KEGG:

id description
K02208 CDK8_11; cyclin-dependent kinase 8/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611779.2 True 2467 mRNA 0.47 13 18716059 18786106

Neighbor

gene id symbol gene type direction distance location
LOC110529197 LOC106571315 coding upstream 134009 18469380 ~ 18582050 (+)
LOC110529525 NA coding upstream 251316 18461630 ~ 18464743 (+)
LOC118965607 NA coding upstream 256764 18457768 ~ 18459295 (+)
LOC110529195 LOC106571338 coding upstream 259846 18454978 ~ 18456213 (+)
LOC110529523 LOC106571317 coding upstream 266575 18362788 ~ 18449484 (+)
LOC110529530 LOC106571309 coding downstream 20411 18806517 ~ 18876551 (+)
LOC110529536 LOC106571306 coding downstream 116129 18902235 ~ 18906394 (+)
LOC110529539 LOC106571303 coding downstream 138892 18924998 ~ 18936498 (+)
LOC118965498 lrp11 coding downstream 157053 18943159 ~ 18948106 (+)
LOC110529547 LOC106571352 coding downstream 371156 19157262 ~ 19161639 (+)
G681274 NA non-coding upstream 1239 18709194 ~ 18714820 (+)
G681268 NA non-coding upstream 27022 18688757 ~ 18689037 (+)
G681232 NA non-coding upstream 98015 18606289 ~ 18618044 (+)
G681162 LOC106571314 non-coding upstream 122227 18593615 ~ 18593832 (+)
G681156 NA non-coding upstream 126922 18588835 ~ 18589137 (+)
G681288 NA non-coding downstream 735 18786841 ~ 18788672 (+)
G681295 NA non-coding downstream 3364 18789470 ~ 18790905 (+)
G681294 NA non-coding downstream 5006 18791112 ~ 18792144 (+)
G681297 NA non-coding downstream 6259 18792365 ~ 18794013 (+)
G681283 NA non-coding downstream 8776 18794882 ~ 18796597 (+)
LOC110529505 LOC106571335 other upstream 1821224 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 2327723 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 2330114 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 3456069 15258311 ~ 15260331 (+)
G676919 NA other upstream 3608916 15105603 ~ 15107143 (+)
G681909 NA other downstream 377830 19163936 ~ 19165640 (+)
G682611 NA other downstream 942727 19728833 ~ 19729671 (+)
G683669 NA other downstream 1776769 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 1840844 20626950 ~ 20632899 (+)
G683845 NA other downstream 1920952 20707058 ~ 20707371 (+)

Expression


Co-expression Network