trnaa-ugc-23


Basic Information

Item Value
gene id trnaa-ugc-23
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18737010 ~ 18737083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-23
GTCACATATGGCtcaattggtagagcatggtgcttgcaacgccaaggttgtgggttcgattccctcGGTGGACC

Function

NR:

description
Deoxyribonuclease gamma precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-23 True 74 mRNA 0.54 1 18737010 18737083

Neighbor

gene id symbol gene type direction distance location
LOC110529197 LOC106571315 coding upstream 154960 18469380 ~ 18582050 (+)
LOC110529525 NA coding upstream 272267 18461630 ~ 18464743 (+)
LOC118965607 NA coding upstream 277715 18457768 ~ 18459295 (+)
LOC110529195 LOC106571338 coding upstream 280797 18454978 ~ 18456213 (+)
LOC110529523 LOC106571317 coding upstream 287526 18362788 ~ 18449484 (+)
LOC110529530 LOC106571309 coding downstream 69434 18806517 ~ 18876551 (+)
LOC110529536 LOC106571306 coding downstream 165152 18902235 ~ 18906394 (+)
LOC110529539 LOC106571303 coding downstream 187915 18924998 ~ 18936498 (+)
LOC118965498 lrp11 coding downstream 206076 18943159 ~ 18948106 (+)
LOC110529547 LOC106571352 coding downstream 420179 19157262 ~ 19161639 (+)
G681274 NA non-coding upstream 22190 18709194 ~ 18714820 (+)
G681268 NA non-coding upstream 47973 18688757 ~ 18689037 (+)
G681232 NA non-coding upstream 118966 18606289 ~ 18618044 (+)
G681162 LOC106571314 non-coding upstream 143178 18593615 ~ 18593832 (+)
G681156 NA non-coding upstream 147873 18588835 ~ 18589137 (+)
G681288 NA non-coding downstream 49758 18786841 ~ 18788672 (+)
G681295 NA non-coding downstream 52387 18789470 ~ 18790905 (+)
G681294 NA non-coding downstream 54029 18791112 ~ 18792144 (+)
G681297 NA non-coding downstream 55282 18792365 ~ 18794013 (+)
G681283 NA non-coding downstream 57799 18794882 ~ 18796597 (+)
LOC110529505 LOC106571335 other upstream 1842175 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 2348674 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 2351065 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 3477020 15258311 ~ 15260331 (+)
G676919 NA other upstream 3629867 15105603 ~ 15107143 (+)
G681909 NA other downstream 426853 19163936 ~ 19165640 (+)
G682611 NA other downstream 991750 19728833 ~ 19729671 (+)
G683669 NA other downstream 1825792 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 1889867 20626950 ~ 20632899 (+)
G683845 NA other downstream 1969975 20707058 ~ 20707371 (+)

Expression


Co-expression Network