LOC110529536 (LOC106571306)


Basic Information

Item Value
gene id LOC110529536
gene name LOC106571306
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18902235 ~ 18906394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611789.2
caaatcttTCTCTCGACCCGTGTGCACCTACGTTATAAACTTCTAGAACCGTACCGCAATTGAGAATTGATTCACGTTTAGTTTGAGAATTTGGTTGTTTTGGGCTAGGAATTCTCTCCCGGCCTTCGTTTCAATGATCCACCACATCAACACTGAGCCGTTCTGTAAATAAATCAATGACTATATCACCAAATGTTGTTTCAAGAAGAACCGCCATGCTTGCGCACGCGCTCTTGATTGATTTCGGTGTCACTTGGGCCGGGGGTGTTGTTTCCTCCACGATCATACAACAGCTAGAAGATGGCGATGAAACGAACATCAGTTTATACTCTATGTGTACTGTTTATGTCATTCATTTTCGCTGAGTCTTCACCTCGACAATTGAACACGGAAAGTATTCTGATCAATGTGACAGCAGGGACATTGAATGATACACAGGTGCAGGAGTCCAACAACTTGCAGATCAACCTGAATATTTCAGTGGATGAAGAGCAGGTGCTCATCAATGACATCCCTGTGGAGTTGTCAGGGGTGACCAGGTTGAACTGCCAAGCCTTGCTGTTGGATACCACCAATGGCACAAGTGAATTTGAATCTGGTGACTATGTCTCCACTGTCACCCGGGTGATGGTGAGCCAGAATCGCTTGTGGAGTGATTCAGAAGAGGTGGTGGCTCTCCAAGTGTTCAGCGAGGTCATCGAGATGGAGGGGAAAAAGGTCCAGCAGCCAGAAATGTGTGAAGTGAAGATACTGATGAGCCCCAATTTCCAGACGCTTGCGCAGTATACCAACACCTATCCCATTGGACACAGCGAGATTTTCAGGATCCCAAGGGAAAATGATGTGGTCATCACAGATCCAACAAATCCTAAAAAAGCTGAATACCAAGTGATGTCCCAGACCACCAGTCATTACCCTCTGAAGCATGCGGACACCACCCAGGAGGAGACTGCTGCCCCAGGCAAGCTCCCGGAGACTCCCCTCCGCATGGACCCAGACCTGCTGTATGATAACAATGAGGGTGATGACTTGGGAGGGCTGTCTGATCAGATGCAGACAGAGGCACCACTCAAAGAATCTCTCTCTTCTTACAGTGCCATGTGTCGAtgggtggaggaggtgagggaccgCCTGCGACGCTTCTGGTCTGAGTCCTTGCCCCTGTTCTtcttggtcatgtgggtggtagTGATTGGTGTGGTTGGGTCAGCGGTCATTGTCAAGATCCTGGACATGTTCTTCCCAACATGCGAACACAAGGGAATTTTACATTTAAATCCTGTGACTCTGATGCCGGAAGATGAGAAACACACCCTGCTGGAGAACATTGAAatagaggtagaggaggtgaAAAGGCCTTCATTGAAAACTGAAGAGTCTGATTGCATCTGTTGAAAACACAAGGCATTATGTGGTTAGAGAAACCATAATCTCTTTGTAGCACTTATTACACATGCATTGCAAAAATAACATGTTTAGCTTTATTTCTCAAACATTATACCCTCCTCTCAAAGAAGGAATCTGAAATGTTACTAGTGGAAGCAGAGCTGCATACTGCATTATTTTTCATATTATGATTGTGTTACCTCACAGTGCCTCTGTAACCATTCTACTTTGCATTATGAAATACTGACTTCCTATTGGTTTATTTTTGATTGCTCATTTCATATTTTATCATTCTGACTGGAGGATTGAACTGAGGATTTGGTGTTTGTTTGCATGCAACTTTAAATCATAAGAcaaactgtttttatttactgTATTTGAACCAGTGCATCATATTGTCAGAGCCTCACCAATGCATTTGTTGTAAAATGTCAAAACATTTTTACGTTGGTATTACATTTTGTTTGAACTTGACGGGCCTGCGCTTAGGTTCATTAAAGGACAGGTGGTCCTAGTCTTGCACCCATCATTATGAGTCGAACAGAGACTGAGCAAATAGAAGATCTCATTCCAACCATTTCAGTTGATAGAGACAGATGGCAGTTAGTTCCTGTAGGTGAATGATCTGTCACAGAACATTGCagatagacctggaaagtatagAACAGACATTAACTGCTTTAGTGTCCTGTCTATACAGTCCATTTCTGTTCACTCTGAATATACTCCTGCTTTATGCCTTGAAATGTATGAATATGGTTACTGGATGTTCTTTGCAATATGAGTGAATGACAATGGATGTTCTCTGCAATGTGAATTACTCGCAATGGCCGTGCACTGTCAACATAGACATCTGAAGCTACACTAATAGGACCTTATACACTTTAGTCTAAGAATAGTCAAACCTACTCCTCCCAATagcttattggctggtttgcctCAAAGCAGGCTAGGCATGACCAAAATAAAATTGTATCAATGTGATTCTCAAGATTAGGCTCATGGTTGACATATGGGGCCCTGGCACATTGACTTAGTAGCCATAGTATGGGATGCAGTTAGCTGTCAATGAAACAACTTCATAATAGGAAACTGCATGCTGATTTGAACTTGAGTGGGTGAATTAGAACTTAGTTATTTTACATTTTGCTTCTATGGTgcctcaattcaatttcaatctTGTGTTTTACTAAACGCATGGGAGCATGGCATGTGTGCATCATGTATTTTCATTCAAATCAAACTGTACATTGAATTCCCAAATCCTGCTCAATAAAAATGTTTCTGTAAA
>XM_036984925.1
ACCCGTGTGCACCTACGTTATAAACTTCTAGAACCGTACCGCAATTGAGAATTGATTCACGTTTAGTTTGAGAATTTGGTTGTTTTGGGCTAGGAATTCTCTCCCGGCCTTCGTTTCAATGATCCACCACATCAACACTGAGTAAACTGTCATATTAAGCGTATCCATGGCAATCCTATGTTTCTGAAATGTTAGCGAGTTATCTGAAATATAATACTAACAAGTTAGCTAACATTTAgctttactagctagctagcaatatgCTATAGATTGGCAATGGTTAGCAATCTTGCTAGCAGTAGAATAACAGTTGATATTTTAATTTCAGCAAATGTCGTTATcaaatgtaggctgtgtgtaaccAGACATTAACGTTGGTGCATGTTTTCTTACTTTTAGGCCGTTCTGTAAATAAATCAATGACTATATCACCAAATGTTGTTTCAAGAAGAACCGCCATGCTTGCGCACGCGCTCTTGATTGATTTCGGTGTCACTTGGGCCGGGGGTGTTGTTTCCTCCACGATCATACAACAGCTAGAAGATGGCGATGAAACGAACATCAGTTTATACTCTATGTGTACTGTTTATGTCATTCATTTTCGCTGAGTCTTCACCTCGACAATTGAACACGGAAAGTATTCTGATCAATGTGACAGCAGGGACATTGAATGATACACAGGTGCAGGAGTCCAACAACTTGCAGATCAACCTGAATATTTCAGTGGATGAAGAGCAGGTGCTCATCAATGACATCCCTGTGGAGTTGTCAGGGGTGACCAGGTTGAACTGCCAAGCCTTGCTGTTGGATACCACCAATGGCACAAGTGAATTTGAATCTGGTGACTATGTCTCCACTGTCACCCGGGTGATGGTGAGCCAGAATCGCTTGTGGAGTGATTCAGAAGAGGTGGTGGCTCTCCAAGTGTTCAGCGAGGTCATCGAGATGGAGGGGAAAAAGGTCCAGCAGCCAGAAATGTGTGAAGTGAAGATACTGATGAGCCCCAATTTCCAGACGCTTGCGCAGTATACCAACACCTATCCCATTGGACACAGCGAGATTTTCAGGATCCCAAGGGAAAATGATGTGGTCATCACAGATCCAACAAATCCTAAAAAAGCTGAATACCAAGTGATGTCCCAGACCACCAGTCATTACCCTCTGAAGCATGCGGACACCACCCAGGAGGAGACTGCTGCCCCAGGCAAGCTCCCGGAGACTCCCCTCCGCATGGACCCAGACCTGCTGTATGATAACAATGAGGGTGATGACTTGGGAGGGCTGTCTGATCAGATGCAGACAGAGGCACCACTCAAAGAATCTCTCTCTTCTTACAGTGCCATGTGTCGAtgggtggaggaggtgagggaccgCCTGCGACGCTTCTGGTCTGAGTCCTTGCCCCTGTTCTtcttggtcatgtgggtggtagTGATTGGTGTGGTTGGGTCAGCGGTCATTGTCAAGATCCTGGACATGTTCTTCCCAACATGCGAACACAAGGGAATTTTACATTTAAATCCTGTGACTCTGATGCCGGAAGATGAGAAACACACCCTGCTGGAGAACATTGAAatagaggtagaggaggtgaAAAGGCCTTCATTGAAAACTGAAGAGTCTGATTGCATCTGTTGAAAACACAAGGCATTATGTGGTTAGAGAAACCATAATCTCTTTGTAGCACTTATTACACATGCATTGCAAAAATAACATGTTTAGCTTTATTTCTCAAACATTATACCCTCCTCTCAAAGAAGGAATCTGAAATGTTACTAGTGGAAGCAGAGCTGCATACTGCATTATTTTTCATATTATGATTGTGTTACCTCACAGTGCCTCTGTAACCATTCTACTTTGCATTATGAAATACTGACTTCCTATTGGTTTATTTTTGATTGCTCATTTCATATTTTATCATTCTGACTGGAGGATTGAACTGAGGATTTGGTGTTTGTTTGCATGCAACTTTAAATCATAAGAcaaactgtttttatttactgTATTTGAACCAGTGCATCATATTGTCAGAGCCTCACCAATGCATTTGTTGTAAAATGTCAAAACATTTTTACGTTGGTATTACATTTTGTTTGAACTTGACGGGCCTGCGCTTAGGTTCATTAAAGGACAGGTGGTCCTAGTCTTGCACCCATCATTATGAGTCGAACAGAGACTGAGCAAATAGAAGATCTCATTCCAACCATTTCAGTTGATAGAGACAGATGGCAGTTAGTTCCTGTAGGTGAATGATCTGTCACAGAACATTGCagatagacctggaaagtatagAACAGACATTAACTGCTTTAGTGTCCTGTCTATACAGTCCATTTCTGTTCACTCTGAATATACTCCTGCTTTATGCCTTGAAATGTATGAATATGGTTACTGGATGTTCTTTGCAATATGAGTGAATGACAATGGATGTTCTCTGCAATGTGAATTACTCGCAATGGCCGTGCACTGTCAACATAGACATCTGAAGCTACACTAATAGGACCTTATACACTTTAGTCTAAGAATAGTCAAACCTACTCCTCCCAATagcttattggctggtttgcctCAAAGCAGGCTAGGCATGACCAAAATAAAATTGTATCAATGTGATTCTCAAGATTAGGCTCATGGTTGACATATGGGGCCCTGGCACATTGACTTAGTAGCCATAGTATGGGATGCAGTTAGCTGTCAATGAAACAACTTCATAATAGGAAACTGCATGCTGATTTGAACTTGAGTGGGTGAATTAGAACTTAGTTATTTTACATTTTGCTTCTATGGTgcctcaattcaatttcaatctTGTGTTTTACTAAACGCATGGGAGCATGGCATGTGTGCATCATGTATTTTCATTCAAATCAAACTGTACATTGAATTCCCAAATCCTGCTCAATAAAAATGTTTCTGTAAA

Function

NR:

description
glycoprotein integral membrane protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611789.2 False 2677 mRNA 0.43 9 18902235 18906394
XM_036984925.1 True 2920 mRNA 0.42 8 18902250 18906394

Neighbor

gene id symbol gene type direction distance location
LOC110529530 LOC106571309 coding upstream 25684 18806517 ~ 18876551 (+)
LOC110529529 cdk19 coding upstream 116129 18716059 ~ 18786106 (+)
trnaa-ugc-23 NA coding upstream 165152 18737010 ~ 18737083 (+)
LOC110529197 LOC106571315 coding upstream 320185 18469380 ~ 18582050 (+)
LOC110529525 NA coding upstream 437492 18461630 ~ 18464743 (+)
LOC110529539 LOC106571303 coding downstream 18604 18924998 ~ 18936498 (+)
LOC118965498 lrp11 coding downstream 36765 18943159 ~ 18948106 (+)
LOC110529547 LOC106571352 coding downstream 250868 19157262 ~ 19161639 (+)
LOC110529202 lama2 coding downstream 468379 19374773 ~ 19537068 (+)
LOC110529203 NA coding downstream 628526 19534920 ~ 19539445 (+)
G681359 NA non-coding upstream 13329 18888638 ~ 18888906 (+)
G681336 NA non-coding upstream 98149 18803857 ~ 18804086 (+)
G681335 NA non-coding upstream 100492 18801394 ~ 18801743 (+)
G681283 NA non-coding upstream 105638 18794882 ~ 18796597 (+)
G681297 NA non-coding upstream 108222 18792365 ~ 18794013 (+)
G681369 NA non-coding downstream 6097 18912491 ~ 18912967 (+)
G681788 NA non-coding downstream 106432 19012826 ~ 19013045 (+)
G681790 NA non-coding downstream 107778 19014172 ~ 19014412 (+)
G681800 NA non-coding downstream 117282 19023676 ~ 19023881 (+)
G681851 LOC106571351 non-coding downstream 178122 19084516 ~ 19086756 (+)
LOC110529505 LOC106571335 other upstream 2007400 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 2513899 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 2516290 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 3642245 15258311 ~ 15260331 (+)
G676919 NA other upstream 3795092 15105603 ~ 15107143 (+)
G681909 NA other downstream 257542 19163936 ~ 19165640 (+)
G682611 NA other downstream 822439 19728833 ~ 19729671 (+)
G683669 NA other downstream 1656481 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 1720556 20626950 ~ 20632899 (+)
G683845 NA other downstream 1800664 20707058 ~ 20707371 (+)

Expression


Co-expression Network