LOC110529541 (LOC106571301)


Basic Information

Item Value
gene id LOC110529541
gene name LOC106571301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19014870 ~ 19017768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611797.2
ACGGCAGCCCTGGGTGTATAAATGCAGGGAGAGCTCCTAGCTTCAGAAACAGAACAACTCCTCCTCCAAGAGAGAGCAACAAGAGCAGCAACAGATATACTACTGAAGCTAAACTCAACTGAGAAAATAACAAGAACAAGACACTTCTTACAAGATCTACTCGATCCGACGACAAACTCCTTAACTACTCGCAAGAGACTAAGGAAGACTTTTGCAGAACCTGAAAACTTATTTTTGTCTAAGATACTCAGAAAAAAACTAAGAAAAGCAAAATGTCTGCTGGAATGAACATGAGACTGATTTCTTTCTTCTGCCTCACTCTCTCCTACCTGGCTGTGGCTCAGGAGTGCAGTGGGCAGTGTAGTTGCCCCGATGTAGCCCCACAGTGCCCTCCTGGTGTGAGCCTGGTACCCGATGCCTGCAGCTGCTGCAGGGTGTGTGCCAAACAGATGGGCGAGTTCTGCACAGAGAGGGACGTGTGTGACCCCCACAAAGGACTCTTCTGTGAATTTGGCTCCCCCATCAACCGCCGCATCGGAGTCTGTACAGCTAAGGGTGGCGCCACCTGTGTGATCGGAGGGATGGTGTACAGGAGTGGAGAGTCCTTCCAGAGCAGCTGTAAATACCAGTGCACGTGCCTGGACGGTGCCGTGGGCTGTGTGCCCCTGTGCAGCATGGACATCCGCCTGCCCAGCCCTGACTGCCCCATGCCCCACCGCGTCAAAGTGCCCGGGAAGTGCTGCGAGGAGTGGGTGTGCGATGCCCCCCAACACACAAACAGCTTTGTGGGCTCTGTTCTCGCTGCTtacagagaggaggagacctACGGGCCTGACCCCTCCATGATGAGGGAGAACTGCCTGGTCCAGACCACTGAGTGGAGCGCCTGCTCTAAGACCTGCGGCCTGGGCATCTCTACCAGAGTCACCAATGACAACCGCGAGTGCCGCCTGGAGAAACAGTCCCGTCTGTGTATGGTCAGGCCCTGCGAGTCCCACATGGAGCAAAGCATTAGGAAGGGAAAGAAATGCATCCGCACACCAAGAGTGTCCAAGCCCATGAAGTTTGAGATCTCTGGCTGCACCACCACCAAGTCCTACCGCCCCAAGTTCTGTGGCGTGTGCACCGATGGTCGCTGCTGCACCCCCCACAGAACCACCACCCTGCCCATGGAGTTCAAGTGCCCCGACGGCCAGGTCATGAAGAAGCAGATGATGTTCATCAAGACTTGTGCGTGCCACTACAACTGCCCCGGCGAGAACGACATCTTCGAGTCCATGTACTACAAGAAGATGCTTGGAGACATGGCGTAAATAATTACATcaccaaagaagaaaaacaaccAATGACTCTTAACTTGAATCCAACAGATATCCATCTCATCTCGCAGCACAATATTTGTTTTTCTTTTGGTTTGTTATTTCCTCATTTTCTAATTTTGTATTTTGTACAAGGACAGAAACCTATACGCGTATATTCAATGTATATATGTATGAGTAAATTGATGTATGTTTAGGGCCACTTTCCCTAAAGACAAGGGGGCTGCTCTGCGGCCCCAAGAAAAATACTGCACTATAGTTCTACTATGTGACAACCTATGTTTTTGTCACAAATTGGCTGATGCCATGTTCCCCTCTCCCTAAACTGTGGTGTGGATCCAACTAACTGGGCCGTTTCCAACCTCGGAGCACTTAAAGTAACAAAGGGTGAAAACTTTTAACCCCAGTAGTAGAGACACTTAAATCCTTTACCCACCAGAGTGCTACAGCACCAGAGTGCTAGTTGAATGTGTCCTTGTGTATAGTTCACTGTTTGCAGAGCCTGACTGTTGCAGTGTTAATGACAGGTCATGGTTTATCCCATGCTGAAAAACAACCGTCCTCCCAGACAAGGAGCGTAGTGTGCATGCTTTGAGGGTTTGCCACAGCACTGAGAAAAGAGGTGTTTGACTTTGACTGACTGATTCAGGTTGCAAGGAAGGAATCTGTATTTTGTCAAAAAAAGACTGGAGGATTTGTAGCTTCATTCCTTTTTTAGATATTATTGATGCTGTAAATGTTGTACATATTGTTGTACAGTTGTTGAAGTTAATTTAAAGTTAAaaagtgtttgttttttgttttttctctTGCTTCAATATGTTTATTGATAGCTTATTTGCTGAGTTTGACTGTTCCTGTGACAGTTTTGATACTATTTTATTGAGAAGTGTGACAAAGAAGttacatgttttcacttttgtAGTTTGgaataaaatattatattttttatataaa

Function

NR:

description
connective tissue growth factor-like

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K06827 CTGF, CCN2, IGFBP8; connective tissue growth factor (insulin-like growth factor-binding protein 8)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611797.2 True 2276 mRNA 0.47 5 19014870 19017768

Neighbor

gene id symbol gene type direction distance location
LOC110529540 map3k5 coding downstream 7546 18948277 ~ 19007324 (-)
LOC110529537 lrp11 coding downstream 67085 18934732 ~ 18947785 (-)
LOC110529538 LOC106571302 coding downstream 90050 18922233 ~ 18924820 (-)
LOC110529533 LOC106571304 coding downstream 92798 18913710 ~ 18922072 (-)
LOC110529535 katna1 coding downstream 101403 18904660 ~ 18913467 (-)
LOC110529542 moxd1 coding upstream 40118 19057886 ~ 19075303 (-)
LOC110529543 LOC106571351 coding upstream 57821 19075589 ~ 19086401 (-)
LOC110529545 LOC106571514 coding upstream 69393 19087161 ~ 19088718 (-)
LOC110529544 LOC106571513 coding upstream 71097 19088865 ~ 19091183 (-)
LOC110529200 LOC106571511 coding upstream 115105 19132873 ~ 19133913 (-)
G681780 NA non-coding downstream 5913 19008694 ~ 19008957 (-)
G681777 NA non-coding downstream 7087 19007571 ~ 19007783 (-)
G681748 NA non-coding downstream 43945 18894166 ~ 18970925 (-)
G681796 NA non-coding upstream 3644 19021412 ~ 19021922 (-)
G681819 NA non-coding upstream 19102 19036870 ~ 19039566 (-)
G681838 NA non-coding upstream 32028 19049796 ~ 19050143 (-)
G682085 NA non-coding upstream 79010 19096778 ~ 19097002 (-)
G681659 NA other downstream 222733 18791230 ~ 18792137 (-)
G679471 NA other downstream 1900342 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 2384611 16625090 ~ 16630259 (-)
G679087 NA other downstream 2581856 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 4498342 14508329 ~ 14516528 (-)
G684844 NA other upstream 2460998 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 2902659 21920427 ~ 21926307 (-)
G685953 NA other upstream 3141262 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 4599139 23614938 ~ 23659111 (-)
G687890 NA other upstream 4617541 23635309 ~ 23637408 (-)

Expression


Co-expression Network