LOC110529543 (LOC106571351)


Basic Information

Item Value
gene id LOC110529543
gene name LOC106571351
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19075589 ~ 19086401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611800.2
GCGAAGTAAATCCTCTCACTTCACCTCTTGCACTATGATTTGATCTTTGCTGTAAAGCGGCTTAGAGTGGATCATGTGACTAGAAAAACATGACACACCGATCAGGAAGCAGAGTGTAGGCCGAGCAGACTGTCAAGACAGAACTCATTAAGGTATTGGGGAGACTCCCAATGTGTCAACGATGGCCTACCAGTACGGAAAAGTGCAGGACCCAAATGTGCTTACTCAGACGATAATCTCCAACATCCAAAAGATCGCACAACAAACATCTGAAATACAGAGTATTGTGGATAAGTTGGGAACCCCACAAGATACAACTGAGCTCAGACAGCAGCTGCAGCAGAAACAACAGAATGTCAACCACCTTGCCAAAGAAACAGACCGAAGTGTGAAGCAATTTGGCTCTTTGCCTGTCACAACTGAACAGCGCCAGAGAAAGATCCAGAAAGACCGATTTATCAATGACTTCTCCAATGCACTGGCCAATTTCCAAAAGACACAGAGGCAGGCTGCTCAGAAAGAGAAGGCGTTTGTTGCCAGAGTCCGTGCTGAGTCCAGAGTGTCGGGTGGCTATCCTGACGAGAGCTTTGGAGGAAATGGAAACGTCTTTGAAAGTGGGGGGCAGGCCCAGGTCCAGTCACAGTCCCAGGAGGTGGCCATCACTGAAGAGGAcctgcagctcatccaggagagagagacttCCATCAGACAGCTAGAGTCTGATATTACAGACATAAATGAAATATTTAAGGACTTGGGCATGATGGTCCATGAGCAAGGGGATGTGATCGACAGTATAGAGGCCAATGTGGAAACTGCTGACCTTCATGTTCAGAATGCCACCCAGCAGTTAGCACAGGCTGCAGACTATCAGCGCAAATCTAGGAAGAAGATCTGCATTCTCATTGTCGTTCTGGCGGTTCTTGCTGTTGTCATTGGTTTAATCATCTGGGCATCAGTCAAAGGATGATGATGCTTTTCATATACTCTTTGGTCCTGgcattttattgattatttaggacTAAGTTTGAGTTACAAATCTCATGGCCATAATACTATAGTAAGAAGAATACACACAGCATAAACCTGGAATAGGCTTGTGTGATACAGTACCTGCTAATTATTATGGACTGGAGCCTAGTCTATGCACCAGAGGCCAAGAATTGTGCAATGCTAAGTAATATCTTGCATCACTTTTGCTGTCAAGTTCCTCAGTGCTGGCTTATTCTTCTCTTcaagcctttattttctatgaaGCAATTTATGCATTTTTATTTAATCTCACAAAGATTCTCACTGTATAAataaatatgtacagtgccttcagaaagttttttCTCACCCACCTACACACCATATCtagtaatgacaaagtgaaaacatgattttgacaatgaaatgctgaaatatcacattttcacaagtattcacaccccttaatcAATACATATTTTGAatgacctttggcagcgattacagctgtgagtctttatgggtaagtctctaagagctctgcacacctggattgtgcaatatttgcaaattattatttttacaattcttcaagctctgtcaagttggttggtgatcattgctagacagccattttcttgCCATAGACAACTTAATTGACAACtgcaactaggccactcaggaacattcaatgtcctagtgtctgttggaaagcagactgaaccaggtttcctctaggattttgcctgtgcttagctccattctgatGTATTTTTATCCTTAACTCCGTATTCCTTGCCGATGATgagcataacatgatgcaacgttttctgcagttttactttagtgccttgttgcaaacatgatgcaAGTCTTGGAATATGTGTATTCTGTACAGGATTCCTTCATTGaggttagtattttggagtaactacaatgttgttgatccatcttcagttttctcctgccacagccattaaactctataacagttttaaagtcaccattggctccatggtgaaatctctgagcggtttctttcctctctgacacctgtatctttgtagtgactgggtgtattgcaACACCATCCCAAAGTATAATTAATcaaatcaccatgctcaaa

Function

NR:

description
syntaxin-7-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08488 STX7; syntaxin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611800.2 True 2098 mRNA 0.42 10 19075589 19086401

Neighbor

gene id symbol gene type direction distance location
LOC110529542 moxd1 coding downstream 286 19057886 ~ 19075303 (-)
LOC110529541 LOC106571301 coding downstream 57821 19014870 ~ 19017768 (-)
LOC110529540 map3k5 coding downstream 68265 18948277 ~ 19007324 (-)
LOC110529537 lrp11 coding downstream 127804 18934732 ~ 18947785 (-)
LOC110529538 LOC106571302 coding downstream 150769 18922233 ~ 18924820 (-)
LOC110529545 LOC106571514 coding upstream 760 19087161 ~ 19088718 (-)
LOC110529544 LOC106571513 coding upstream 2464 19088865 ~ 19091183 (-)
LOC110529200 LOC106571511 coding upstream 46472 19132873 ~ 19133913 (-)
LOC110529546 LOC106571515 coding upstream 53085 19139486 ~ 19140671 (-)
LOC110529549 LOC106607753 coding upstream 75778 19153834 ~ 19170392 (-)
G681838 NA non-coding downstream 25446 19049796 ~ 19050143 (-)
G681819 NA non-coding downstream 36023 19036870 ~ 19039566 (-)
G681796 NA non-coding downstream 53667 19021412 ~ 19021922 (-)
G681780 NA non-coding downstream 66632 19008694 ~ 19008957 (-)
G681777 NA non-coding downstream 67806 19007571 ~ 19007783 (-)
G682085 NA non-coding upstream 10377 19096778 ~ 19097002 (-)
G682086 NA non-coding upstream 13284 19099685 ~ 19099902 (-)
G682082 NA non-coding upstream 77167 19163568 ~ 19163837 (-)
G681659 NA other downstream 283452 18791230 ~ 18792137 (-)
G679471 NA other downstream 1961061 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 2445330 16625090 ~ 16630259 (-)
G679087 NA other downstream 2642575 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 4559061 14508329 ~ 14516528 (-)
G684844 NA other upstream 2392365 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 2834026 21920427 ~ 21926307 (-)
G685953 NA other upstream 3072629 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 4530506 23614938 ~ 23659111 (-)
G687890 NA other upstream 4548908 23635309 ~ 23637408 (-)

Expression


Co-expression Network