LOC110529545 (LOC106571514)


Basic Information

Item Value
gene id LOC110529545
gene name LOC106571514
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19087161 ~ 19088718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611802.2
CCAAAATATGTCCAATAGAGTATATAAACTCTGTCATTCTTCTAAGAAGACTGTGCTGGATTCAGCACCACTTACACACCTGCACCTGTGACTACAGTTGCAAGTGATCAGCTCTAACTTGAATGTCTTTTTGTTTTTGGCAATGGATATCTCATCTCATCAACATCTGGATCCTAAGATGTTCTGTTACCCAGAATCAAATGCCTCCTGCACCAGAGAAATCTTCAGTGAAGGGTTTCAAATTGCTTCatactttttttttgtttctgtTATGCTGGTTACTATTCTAGGGAACGGTGTGGTCATTATCTCCGTTGCTCACATAAAACAGCTCCACACGCCAACTAACATACTTATAATGTCTTTGGCAGTTGCAGACCTACTAGTTGGAGTAACTGTGATGCCTTTTAGTACAATTAAGGCTGTGGAGGGCTGCTGGTACTTTGGAGATGCTTTTTGTTTCCTGCATTCTGATATGTTCCTCACATCTGTTTCAATTTTCCACCTGGTATTCATAGCCATAGATCGATATGAGTCTGTGTGCAGTCCACTTCGCTATTCCACCAAGATTACTATACCAATTGCATGGCTCATGGTTTTTGCCAGTTGGGCCGTTGCTGCATTGTACTCCTATGGCCTATTATATTCCAAAGCAAATGTAAGAGGACTGGATGAATTCATTGCATCTATATACTGCCTGGGAAGTTGTAATCTTTTCCTTAATGCTCTGTGGGGCGCCCTAGACACATTGATAGCCTTTTTCTTTCCGTGCTCTGTAATGGTGGGTTTGTATACCAAAATATTTTTGGTGGCAAAAGAACATCTAAGGAAGATTGAAGCCAGCCAAAATAATTCCAATGAGGGAGGTAGAGGTGTGGTGTCTCAACGGTCAGAGCGGAAAGCAGCTAAAACTTTAGGCATTGTGGTGGGTGTTTTCATCTTTTGCTGGCTGCCTTTCTTTGTTAATTCCATAGTTGATCCATACACAAACTTTAGCACACCACCTATTCTCTTTGAGGTGTTTATCTGGCTGGGTTACTTTAATTCTACTGCAAATCCAATCATCTATGCACTGTTTTATCCTTGGTTTCGAAAATGTCTTAATCTCATTGTCACATTGAAAATATTCAATAGAAATTCTTCCTATATAAATGTATTTGCTACTACGTGATCTATTGTAAAGCTACATTAATATAATATACAACTATGTGTGAACAGTATGTAACTAACTTCatgcaaaaaaatgtaaatgtttcatAATAGCCCTTTTTGGGGCAGCAGATGAATTGTCCAGTTACTGTAATTTACTTCTCACAAAAGGATTCATGtcaatacatgtacagtatgtggtttagtggcagtttaaaaaaaaacacaagctATGACCTGTCCACCTTGGATAGTGTGTTCAATGAGGAAAATGAAGAGAAGCATTTGAGAAACCTCTTCTGAACAGTATACTGCTGTCGATATTTGCCTGGTCTTTTTCATGTAATCTTGTTTCATTTATAAATCCCTTCTTATTGTATTTTGAATGTAGCATAGGCCTACCTTAGAA
>TU776680
TGCTTTTTGTTTCCTGCATTCTGATATGTTCCTCACATCTGTTTCAATTTTCCACCTGGTATTCATAGCCATAGATCGATATGAGTCTGTGTGCAGTCCACTTCGCTATTCCACCAAGATTACTATACCAATTGCATGGCTCATGGTTTTTGCCAGTTGGGCCGTTGCTGCATTGTACTCCTATGGCCTATTATATTCCAAAGCAAATGTAAGAGGACTGGATGAATTCATTGCATCTATATACTGCCTGGGAAGTTGTAATCTTTTCCTTAATGCTCTGTGGGGCGCCCTAGACACATTGATAGCCTTTTTCTTTCCGTGC

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611802.2 False 1558 mRNA 0.38 1 19087161 19088718
TU776680 True 322 lncRNA 0.42 1 19087947 19088268

Neighbor

gene id symbol gene type direction distance location
LOC110529543 LOC106571351 coding downstream 760 19075589 ~ 19086401 (-)
LOC110529542 moxd1 coding downstream 11858 19057886 ~ 19075303 (-)
LOC110529541 LOC106571301 coding downstream 69393 19014870 ~ 19017768 (-)
LOC110529540 map3k5 coding downstream 79837 18948277 ~ 19007324 (-)
LOC110529537 lrp11 coding downstream 139376 18934732 ~ 18947785 (-)
LOC110529544 LOC106571513 coding upstream 147 19088865 ~ 19091183 (-)
LOC110529200 LOC106571511 coding upstream 44155 19132873 ~ 19133913 (-)
LOC110529546 LOC106571515 coding upstream 50768 19139486 ~ 19140671 (-)
LOC110529549 LOC106607753 coding upstream 73461 19153834 ~ 19170392 (-)
LOC110529548 LOC106571353 coding upstream 82055 19170773 ~ 19333997 (-)
G681838 NA non-coding downstream 37018 19049796 ~ 19050143 (-)
G681819 NA non-coding downstream 47595 19036870 ~ 19039566 (-)
G681796 NA non-coding downstream 65239 19021412 ~ 19021922 (-)
G681780 NA non-coding downstream 78204 19008694 ~ 19008957 (-)
G681777 NA non-coding downstream 79378 19007571 ~ 19007783 (-)
G682085 NA non-coding upstream 8060 19096778 ~ 19097002 (-)
G682086 NA non-coding upstream 10967 19099685 ~ 19099902 (-)
G682082 NA non-coding upstream 74850 19163568 ~ 19163837 (-)
G682113 NA non-coding upstream 75266 19163984 ~ 19165619 (-)
G681659 NA other downstream 295024 18791230 ~ 18792137 (-)
G679471 NA other downstream 1972633 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 2456902 16625090 ~ 16630259 (-)
G679087 NA other downstream 2654147 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 4570633 14508329 ~ 14516528 (-)
G684844 NA other upstream 2390048 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 2831709 21920427 ~ 21926307 (-)
G685953 NA other upstream 3070312 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 4528189 23614938 ~ 23659111 (-)
G687890 NA other upstream 4546591 23635309 ~ 23637408 (-)

Expression


Co-expression Network