LOC110529544 (LOC106571513)


Basic Information

Item Value
gene id LOC110529544
gene name LOC106571513
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19088865 ~ 19091183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611801.2
GCAGCATCCGTCCGTTTATATAATACTCAGAGAAAAGTCTAAGCGCTCGTAGAGCCTGAGACTGAAGGAGGTTGTGCATGGTTTGCTGAATATGATTAGCTGAAAGGATCCTGACCAGAGCTCAAAATCAGTGCTTAGTGTTTCCCAATGAAATAATTGGGATTAAGGTATTGATTGCAGAGAACAAATTAAAGAAACACGCAATATTTGAAGTGTTAAGAAGCCCAATAATCTGACTCAGAACAACGTTTTGGACTAGCAGTTCTGTGTTCCGTCTGTTACAGTAACAATATTCTTGCAAAACTTTAATTGAAAGCCTAAAACACCAGGTGGAATGGACTTCTCAAATACTTCGAACCTCAACAGCACTGTGAAATCACAGACTCTTTTCTGCTACGAGTCTTTGACTGGGTCGTGTGTGAGGTTTGCTCGACCCCTGAGCGTTCAGGTTCCGATGTTCACATCGATGGTGTTGGCCATACTGGTGACTGTTATTGGGAATCTTCTGGTCATCACCTCCATTGCACACTTCAAGCAGCTTCAAACCTCCGTAAACCAACTGCTCGTCTCCTTGGCTGTGTGTGACCTCCTTCTGGGAGTGTTTGTAATGCCGTGCAGTGCTGTGCGCTCTGTCCAGGGCTGTTGGTACCTAGGAGGGTTTCTGTGTAAGCTCCACACCAGCACTGATATTATGCTGAGCACATCCTCCATCTTCCATCTATCCTTCATCTCCATTGATCGTTACTTTGCTGTCTGCAGGCCACTGTCGTACAGACTGATCATCACCAATAACACTGTATTGATCATGATCACCACCAGTTGGCTGGTCCCTGCCATTTTTTCTTATGGAATGATCTTCCCTGAGATCAATCTTAAAGGCAGGGAGGATTTCTATGAAACACATGTCAAGTGCATTGGAGGCTGTCAGGTGTTCTTTAGTCCAGTGGCAGCTTTAGTAGCATCCTCCTTCAGTTTTTACATCCCAGGCATGATCTTGATTTGTATATATTCCAAGATATATTGGGTTGCCAGGGCTCAGGCCAGGTCCATTAAAGATTTATCTCGTCAGTTTAAAGAGGCAGACTCTGGACGTAGAGAGAGACGAGGGGCAAATATTCTGGCAATAGTAGTGGGAGTGTTTCTAATCTGCTGGAGTCCCTTTTCCTTGTGCCTCATCATTGACCCTTTCATACAGTACTCCATCCCCCCGCTGTTGGGGGATACCCTGGTTTGGTTTGGATATTTGAACTCTGCTTTTAACCCTATTGTCTATGCTTTCTTTTACACTTGGTTCAGGAGGGCTTTGAGAATCATCATCAGTGGTCACATCTTTCGCAGAGGTTCTTGTAGATTTAGATTGTATTCTGAGTAAAGTTTCAGTTGACATTGTATGATGTGTGTTCAAATAAATATATGAATTATTGTGGGATGTAACATGTGACAGTTATGCAACTAAAAGATAAAGCTTGAGTGAAAATGTAACACAGCTGCTTTTAACCTGTTTCATATAAAGCTGTTTGcctgaaataaatgtatttcaatgccttTGATGTCTGTGCCTGTCACCTTGTTTAATAGTGTTCTTTGTCTCCTCCTAGTGGCTACTTGAGGTACACACCGCTGGAACAGTAA
>XM_036984930.1
GCAGCATCCGTCCGTTTATATAATACTCAGAGAAAAGTCTAAGCGCTCGTAGAGCCTGAGACTGAAGGAGGTTGTGCATGGTTTGCTGAATATGATTAGCTGAAAGGATCCTGACCAGAGCTCAAAATCAGTGCTTAGTGTTTCCCAATGAAATAATTGGGATTAAGGTATTGATTGCAGAGAACAAATTAAAGAAACACGCAATATTTGAAGTGTTAAGGTGAGTATAAGTTTTAGGTTGATTGCATGGAGTCTGTCTATTCATAccacttttcatattttcaaAGGAGCAAGAATAAGAAAGATGACATTCCAACACTATTTTCTTTCTTTGTGACCTTTCAATCAAGAACCACATACAGTATGACTAGTTGATGCTACCCCAATTATGCTTCATTAACTTCTGTGATGTGAAATTGTTGTTGATACTAGTCATTTACAGAAGTAGTGGTTCAAGTTGCATGATTACATTTACATACTATGAATATATAGTATAAAAGTTTGATAAAAACTGTGTTTATTAAATGTGTAACTATTTCATGAAGATAGTAATAGCTTACTATTTATGTGGGAATGTGTTACCACAGCCATTTTTCACCCCAAGTGCATTGCCCTCATTTGTGTTATTTTTAGAAATAAACTGGATTTCGATGGGAAGCATAATCAGCAGGATGTGTTGTATTTTCAGAAGCCCAATAATCTGACTCAGAACAACGTTTTGGACTAGCAGTTCTGTGTTCCGTCTGTTACAGTAACAATATTCTTGCAAAACTTTAATTGAAAGCCTAAAACACCAGGTGGAATGGACTTCTCAAATACTTCGAACCTCAACAGCACTGTGAAATCACAGACTCTTTTCTGCTACGAGTCTTTGACTGGGTCGTGTGTGAGGTTTGCTCGACCCCTGAGCGTTCAGGTTCCGATGTTCACATCGATGGTGTTGGCCATACTGGTGACTGTTATTGGGAATCTTCTGGTCATCACCTCCATTGCACACTTCAAGCAGCTTCAAACCTCCGTAAACCAACTGCTCGTCTCCTTGGCTGTGTGTGACCTCCTTCTGGGAGTGTTTGTAATGCCGTGCAGTGCTGTGCGCTCTGTCCAGGGCTGTTGGTACCTAGGAGGGTTTCTGTGTAAGCTCCACACCAGCACTGATATTATGCTGAGCACATCCTCCATCTTCCATCTATCCTTCATCTCCATTGATCGTTACTTTGCTGTCTGCAGGCCACTGTCGTACAGACTGATCATCACCAATAACACTGTATTGATCATGATCACCACCAGTTGGCTGGTCCCTGCCATTTTTTCTTATGGAATGATCTTCCCTGAGATCAATCTTAAAGGCAGGGAGGATTTCTATGAAACACATGTCAAGTGCATTGGAGGCTGTCAGGTGTTCTTTAGTCCAGTGGCAGCTTTAGTAGCATCCTCCTTCAGTTTTTACATCCCAGGCATGATCTTGATTTGTATATATTCCAAGATATATTGGGTTGCCAGGGCTCAGGCCAGGTCCATTAAAGATTTATCTCGTCAGTTTAAAGAGGCAGACTCTGGACGTAGAGAGAGACGAGGGGCAAATATTCTGGCAATAGTAGTGGGAGTGTTTCTAATCTGCTGGAGTCCCTTTTCCTTGTGCCTCATCATTGACCCTTTCATACAGTACTCCATCCCCCCGCTGTTGGGGGATACCCTGGTTTGGTTTGGATATTTGAACTCTGCTTTTAACCCTATTGTCTATGCTTTCTTTTACACTTGGTTCAGGAGGGCTTTGAGAATCATCATCAGTGGTCACATCTTTCGCAGAGGTTCTTGTAGATTTAGATTGTATTCTGAGTAAAGTTTCAGTTGACATTGTATGATGTGTGTTCAAATAAATATATGAATTATTGTGGGATGTAACATGTGACAGTTATGCAACTAAAAGATAAAGCTTGAGTGAAAATGTAACACAGCTGCTTTTAACCTGTTTCATATAAAGCTGTTTGcctgaaataaatgtatttcaatgccttTGATGTCTGTGCCTGTCACCTTGTTTAATAGTGTTCTTTGTCTCCTCCTAGTGGCTACTTGAGGTACACACCGCTGGAACAGTAA

Function

NR:

description
trace amine-associated receptor 1-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611801.2 False 1632 mRNA 0.43 4 19088865 19091183
XM_036984930.1 True 2100 mRNA 0.41 3 19088865 19091183

Neighbor

gene id symbol gene type direction distance location
LOC110529545 LOC106571514 coding downstream 147 19087161 ~ 19088718 (-)
LOC110529543 LOC106571351 coding downstream 2464 19075589 ~ 19086401 (-)
LOC110529542 moxd1 coding downstream 13562 19057886 ~ 19075303 (-)
LOC110529541 LOC106571301 coding downstream 71097 19014870 ~ 19017768 (-)
LOC110529540 map3k5 coding downstream 81541 18948277 ~ 19007324 (-)
LOC110529200 LOC106571511 coding upstream 41690 19132873 ~ 19133913 (-)
LOC110529546 LOC106571515 coding upstream 48303 19139486 ~ 19140671 (-)
LOC110529549 LOC106607753 coding upstream 70996 19153834 ~ 19170392 (-)
LOC110529548 LOC106571353 coding upstream 79590 19170773 ~ 19333997 (-)
LOC110529201 LOC106607756 coding upstream 271717 19362900 ~ 19363986 (-)
G681838 NA non-coding downstream 38722 19049796 ~ 19050143 (-)
G681819 NA non-coding downstream 49299 19036870 ~ 19039566 (-)
G681796 NA non-coding downstream 66943 19021412 ~ 19021922 (-)
G681780 NA non-coding downstream 79908 19008694 ~ 19008957 (-)
G682085 NA non-coding upstream 5595 19096778 ~ 19097002 (-)
G682086 NA non-coding upstream 8502 19099685 ~ 19099902 (-)
G682082 NA non-coding upstream 72385 19163568 ~ 19163837 (-)
G682113 NA non-coding upstream 72801 19163984 ~ 19165619 (-)
G681659 NA other downstream 296728 18791230 ~ 18792137 (-)
G679471 NA other downstream 1974337 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 2458606 16625090 ~ 16630259 (-)
G679087 NA other downstream 2655851 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 4572337 14508329 ~ 14516528 (-)
G684844 NA other upstream 2387583 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 2829244 21920427 ~ 21926307 (-)
G685953 NA other upstream 3067847 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 4525724 23614938 ~ 23659111 (-)
G687890 NA other upstream 4544126 23635309 ~ 23637408 (-)

Expression


Co-expression Network