LOC110529551 (LOC106607757)


Basic Information

Item Value
gene id LOC110529551
gene name LOC106607757
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19540618 ~ 19543748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474406.2
tTAAGGAAGTGAGATTATAGTGAGAGTGTACCACTACATCCCAGTGTAGAAGTAGAACTGATTCATCCATCCTGTGCTGCTCTGCATCGGTTGTCATAATGAGGGCTCTGTTCAGACTGACCCAGGAAAGAGTCCTCTCcttggggcagagagaaaggagaacCATCCTGGAGCTCTACGGCAGCTCCACTCCAGCTCAGCACTGGTGTACAGACAGCGTGGACATCACCATGACCCAGTCAGAAATGTCTTCTTTTTAAGAACATCACATTACAAGTATTCTGGATGACACCGTGGAAAAGGAACAACAGTAAAGATGTGAGGCGGCTGCAGGCCATGGTGACctctgtgtttggcctagtaaAGTCTAGCCAGCACCAGCCACCTCAGTTTGTCCAAGTCCCCTTCCACCACTACAGCCAAGCCCTCCAGGCCACTGTACAGGCCCATCAAAGGAAACATGGACTACTCATGTAGGCACAAGCAAAACAGAACACAATATTCTCCTTTGGGAAAAATGTGTTCCCTTTGATTTTCTATTATTGttgtttttaatgtattttattgTGTATACATGAGAACATTACACACTAAATAGGAGCAATTACACATTTATTTACAAAAAGTTTAGTGGTCATTTCAGAAGCAGTATAACACAGTATACAACATCAAATGGAACATCTTTCAAGTCATATTCACAGTGTCAAGAACAACATAAGGGCAGGTAGAgtgtataaaatacagtacatatctGAAATAATGTTATTCATGTTTTCTAAATTGAAATGATCGGACATACATTGCATTATTCAAAACTGATCCCTCCATCGAACGTACCTTTTGAGAACTACACATGTTAATGTTATTAGGAAGCGACCTGGAATGCTAGCTTAGGACCACAGCTTGAGAACCGGTTCTACCCAACACATCTTCATATGAACACAATTTTAGCTAGCAGGGttgaggtcaattccatttaaattctagTCAATtaagaaagtaaaccaaattccaatccCAATTTTTCccaattgaaaagcattgaagagaattggaatgtcagggtacttcctgaattgactgaaactGAAATAGAATAGAATTGACCCTGGTAGTTTGGGGAGGCCTGTATGCTACGTTTTAGTTATCTTACAATGGAGAATAAGCTGCAGAGTAAAGAAAATCCTATTAGTGTTTAAATTATGTCTTAAATGTCTATGATTGAATGTAAAAACATTGTCGCTGTCATTTTTAGAACAATCCATTACAATATACTGTTTCCTCAACTGTTGTTTTCTTGGTTTGGGGCATTTACTGTATTGATCAATACCACCACAGATTATAGTTCAGTGGCTCTCCTCAACTCCTCAAGCTCTTGGCAGTTGGACTTCCAGTAGCATACATGTCAATCAGGGGAGTGATTTATCCCAAACAGTAAGTACCCTGTACACATGTGGACCTAACACACCACAGGGCATACATTTCAGAGGAAGAGCCCTCATCTACTTAAACTGTATTCTAAACTACAGCACCAAAGGACAACAACTTTAACACTTCTGTAATACCTGTCCTGCTGGCTCCAGTGGTCAGCCTTAACGTTACCTCTGTCCGTTAtcctttaaaggcccagtgcactcaaaaacgtgattttcctATGTTGTATATACACTcactggacagtttattaggtacaacaCCCCGTTTACAAAGATGCATCGCACCAATAGACAATTAGacacgtggccgtggcttgctatataaagcaggcagaaaGTAATTGAGGCGTTCAATTGAACGTTAGGATGGGAAAAATTTGTGAGCTAAGGGactttgagcatggtatgatCATCGGTGTCAGGCACACCgattccagtatctcagaaatggccggcctcctgggcttttcacgcacgacagtgtctatGGATTACCAAGAATGATGcgaaaaaacatccagtcagcggcagtcctatgggcgaaaacagctcgttgatgagagaggagaatggagaaggagaatggcaagaatcgcgCAAGCAGGCGGGCCACAAATAGGCAAATAacagcgcagtacaacagtggtgtgcagaacgccATCTCGGAACTCACAACTCGTCAATcattgtcacggatgggctattgcagcagacgaccacatcAGGTTCCAcgcctatcagctaaaaacataAAGTGGTTTCagtggacaattgaggagtggaaaaacattgcctgctCTGACGAATCCCGGTTCTGGTtgcatcatgctgatggcagaatcagcatttagcattagcagcATAAGTCCATGGACCAATCCtgtctggtgtcaacggtacaggctggtgccggtggtgtaatggtgtgg

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474406.2 True 2365 mRNA 0.43 3 19540618 19543748

Neighbor

gene id symbol gene type direction distance location
LOC110529203 NA coding upstream 1173 19534920 ~ 19539445 (+)
LOC110529202 lama2 coding upstream 3550 19374773 ~ 19537068 (+)
LOC110529547 LOC106571352 coding upstream 378979 19157262 ~ 19161639 (+)
LOC118965498 lrp11 coding upstream 592512 18943159 ~ 18948106 (+)
LOC110529539 LOC106571303 coding upstream 604120 18924998 ~ 18936498 (+)
LOC110529552 LOC106571356 coding downstream 48836 19592584 ~ 19632071 (+)
LOC110529553 LOC106571358 coding downstream 120289 19664037 ~ 19672737 (+)
akap7 LOC106571361 coding downstream 289143 19832891 ~ 19863963 (+)
LOC118965655 NA coding downstream 332185 19875933 ~ 19875988 (+)
LOC118965499 NA coding downstream 384004 19927752 ~ 19930247 (+)
G682332 NA non-coding upstream 48039 19492373 ~ 19492579 (+)
G682270 NA non-coding upstream 118225 19422120 ~ 19422393 (+)
G681902 NA non-coding upstream 370738 19167096 ~ 19169880 (+)
G681898 NA non-coding upstream 390561 19149719 ~ 19150057 (+)
G681897 NA non-coding upstream 391410 19148889 ~ 19149208 (+)
G682412 NA non-coding downstream 75191 19618939 ~ 19619194 (+)
G682413 NA non-coding downstream 75453 19619201 ~ 19619440 (+)
G682359 NA non-coding downstream 93266 19637014 ~ 19638372 (+)
G682424 NA non-coding downstream 104005 19647753 ~ 19648041 (+)
G682425 NA non-coding downstream 104455 19648203 ~ 19648495 (+)
G681909 NA other upstream 374978 19163936 ~ 19165640 (+)
LOC110529505 LOC106571335 other upstream 2645783 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 3152282 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 3154673 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 4280628 15258311 ~ 15260331 (+)
G682611 NA other downstream 185085 19728833 ~ 19729671 (+)
G683669 NA other downstream 1019127 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 1083202 20626950 ~ 20632899 (+)
G683845 NA other downstream 1163310 20707058 ~ 20707371 (+)
G684314 NA other downstream 1533322 21077070 ~ 21078871 (+)

Expression


Co-expression Network