XLOC_025747 (pgls)


Basic Information

Item Value
gene id XLOC_025747
gene name pgls
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52684556 ~ 52700610 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050614
CTCGCTGTGATTGGATGTTGGTCAGATCGCACGAGGAACTCTTGAAGGTAGCCTGCTAAGAAAACATTCCGCGAGAGTGATGTCTGGAAGGAGAGTGTTGGTTTTTTCTTCAGTGGGGGAGCTCGGGTCTAGTCTGGCTCAGCTGCTGTCCTCTCGAGCAGAAAAAGCTCTGAGCTCCGGTGGAAGCTGCTTTTCTCTGGGTCTTTCAGGAGGGAGTCTGGTTTCTATACTGAGTAAAGAACTGCCTGCTGTACCAAACCTGGACTGCAGCAAGTGGCTTATTGGCTTCTGTGATGAGAGACTTGTGCCATTCAGTGATCCAGAGAGCACTTATGGATTATACAAGAATCAATTATTTGGGAAAATCAACATTCCAGAAGAAAGGATTTTAGCCATAGATCCTTCTTTACCTGTGAAAGAATGTGCCGAGGACTATGCCAGCAAACTCAGCAAGGCCTTTAGCACAGAGAAGATTCCAGTGTTTGATGTCTTGTTGCTGGGAATGGGACCAGATGGACACACTTGCTCTCTCTTTCCAGATCATCCATTATTACAGGAGCGTCAGAAGACAGTGGCCCCTATCTCTGATTCCCCCAAACCGCCCCCTCAGCGAGTCACTATGACGTTACCCATGGTTAACGCCGCTCGATGTGTGGTGTTTGTGTCGACCGGCGGCAGCAAAGCCCCTGTACTGAAGCATGTGTTGGAGGGTGGTGAAGGGCCTGCTCTTCCAGCAGCTCTGGTTTCTCCTGACCAAGGAGAGCTTTTCTGGCTCCTGGATGAACCGGCTGCTGCCTCACTCACGTCTCCAGTTGAGAGGCCTGGTCCTGGAGCTAAACTTTAAACTCAGCACACTGAACTTGTAGAAACACAGGCTAGTATTTAGAGCTGTGGCGAAAATTATTTGAGAAAATGATTCTGCAAATTTCAAAACGCACCACTACTTTCTCTTAAAACGGTTCTGAGCTATGTAACAGTAGATGTGCTCTAtgccagtttttaacagcagatggggctctaggttagtttttaacaatacactcaaatgtacacaaaaaaaaactattgtgagatttcattgagacaacctttttaaatgttcaaattatatacatttgttaaaaatgttaagttaacttaatcaatttgtgttgggacaacatgaatgaattgtgtggaaccctgcatttttttacagtgtacagcttGGTTTGTATGTCATGACAATAATGTAAGCACAGCTCACTATGAACATTCTTGTACTTTGCTTAAATCTTTTCTAACTTCCCTTATAATTATTATAGGCTGGACTGGTATTTGTAAGGAATTGGATACAAGCAAAGTATGGCTGTTTGTAAAAGCAttcagcgccatctgctgttaaaaacagccTACAATCTATTCAACAAAGAATATCAatgctttttaaacatttatttctctAATAATATTCACCGCCGCTCTACTGGGATTTCTGTGGAGTCCCTAAACAGCACTGTTTAAGAAGTTGTTATCTTAGCACTTATGAAAATTAATCATCACAAAGGTAATTACTGCAGTTACTTCTACTATTGTATTACTGTTATACACtgcaaaatgattcattggaaggaaaaaatataaattagttgcaaacaattgatattgGCTGATTTTGAATAAACAAATCGAACtgagtaatgtttaacttaatttgtttaaattcagcccatttaaattgtttgcaaccacttaccttaaaatatgtaaatccaattaatcatttttttcagtgtcggatctttaatgattttaataatcTGTCATTTGATATTGTTCACTATTTTCACATTAGTTATGTTACAGCaacaataaacataaatgttGTTATTTTGAAGAAACACATTGTTGCCATTGTACTTTTGTCTATAGAtgcaatgttttattaaaaaactgcTGAAAATGTGAA

Function

symbol description
pgls Predicted to enable 6-phosphogluconolactonase activity. Predicted to be involved in pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt. Predicted to be active in cytoplasm. Orthologous to human PGLS (6-phosphogluconolactonase).

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0009051 pentose-phosphate shunt, oxidative branch biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0017057 6-phosphogluconolactonase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway

ZFIN:

id description
ZDB-GENE-040822-9 Predicted to enable 6-phosphogluconolactonase activity. Predicted to be involved in pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt. Predicted to be active in cytoplasm. Orthologous to human PGLS (6-phosphogluconolactonase).

Ensembl:

ensembl_id ENSDARG00000021233

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050614 True 1948 mRNA 0.39 6 52684556 52700610

Neighbor

gene id symbol gene type direction distance location
XLOC_025746 BX511096.1 coding upstream 64381 52620058 ~ 52620175 (+)
XLOC_025745 slc27a1a coding upstream 80873 52545014 ~ 52603683 (+)
XLOC_025744 ptger1c coding upstream 144893 52528606 ~ 52539663 (+)
XLOC_025743 si:ch211-241f5.3 coding upstream 187791 52475058 ~ 52496765 (+)
XLOC_025742 si:ch211-191c10.3 coding upstream 209786 52473670 ~ 52474770 (+)
XLOC_025748 colgalt1 coding downstream 2090 52702700 ~ 52732034 (+)
XLOC_025749 gmip coding downstream 36955 52737565 ~ 52801302 (+)
XLOC_025750 NA coding downstream 105662 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 coding downstream 128302 52828912 ~ 52829006 (+)
XLOC_025752 atp13a1 coding downstream 199191 52899801 ~ 52952026 (+)
XLOC_025429 BX649540.1 misc upstream 22435520 30248739 ~ 30249036 (+)
XLOC_025739 NA non-coding upstream 292351 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 295517 52377578 ~ 52389039 (+)
XLOC_025737 BX511132.1 non-coding upstream 305084 52367302 ~ 52379472 (+)
XLOC_025735 NA non-coding upstream 420410 52224103 ~ 52264146 (+)
XLOC_025761 NA non-coding downstream 826355 53526965 ~ 53652401 (+)
XLOC_025764 CU633748.1 non-coding downstream 1366913 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 1410779 54111389 ~ 54111972 (+)

Expression


Co-expression Network