LOC118965499


Basic Information

Item Value
gene id LOC118965499
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19927752 ~ 19930247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052829.1
TGGAAAAACTACCCAATTGTCATCCCTGGGTAAAAGttaagataccttcatagaaaatgactcaagtaaaagtgagtcacccagaaAAATACTACTTTAGTAAAATGTCATCATTTGGTTTTAatacttaattatcaaaagtaaatgtaatggcAAAAATATACTCTGCGATACGTCGTGcccaagaacagcccttagccgtggtatattggccatataccacttCCCCGCGTgctttattgcttaaatatacgcTGGAGCTGGGTTTCCATGAAATCGCCATGTTTCAACGATGAAAAGTAACATCACGAAATAATTTCAGAAATCGCAAAATCACTTTGCTCCATTCACGGAGCATGGATTGCCGTTGGATGCAACGGCCACGGAATTTCTAAACTGTACTGTCTTTGCTAAGGCAAATATTTGTATAACTGTCATCATCTGTAGTTAATTATAGTTGACCGGACGTTTGTACAGCCTTAAAAACAAACCGATGTAGCACAATCAAAAGTAAATTGTTCCACATCTGTAGAGTAATTTCATCTAATATAAAAATACGATCTACGGTTCAATGAGACCAGGGACGTTTCTGAAATGATATGAATGAGACCGCTGCATTTAATGTCTCgtctagttaaaataaattaaacgTACTTTTTCATAATAATGTAAAAAATCAAGCGCTTCAAATCGAGTGGTGCCATTGGTGCTCTTTTGACAGTCTGATAAATTATTCACATCAGTCAAACCAGTCTTCAATCAGGCAATCAAGTACATTAATGACTGCACTACCGTCTCAAGAATGTTGTGGGCCTGACAAACGGTTAATGTTATGGTGCCCTACAAAACTAAAGTTATTACAAACGTTTACACAGATCTTGTAGAATCTTCTGTAAAACATTTAATTATCATATAACAATTCACAGAAGTTATCACATAACCTTTGTTACCCAGTCAGAATAGTCCAGTGCTTTAATTAGGCAATAATTGTAGGGTTATTGTGTGCTTTTACAACCGGCGTGATGAGAACTCGATCCGGTGGAATACGACAATACGGAGCGCTTATTTCAAAGAGCGCTCTGTAAGTCACGCCCCAGTGGGCAAGGGGCTGAGGCACTTGGACCGTGATTGAGGACACCCTGGCCTGACACCTGGATGTGCCTTGCCCAATCCCACCTGGCTCCCCTCTACATGCTTCCTGTCTGTTACTTTAAAGTCCATAATTAACTTATACAGCTCTGGATCCAATGTCTTACCCACTACTTGTGTCAATTACTTGCTAGTTTATATAACaccttttttttaaactaatgATTCAAAGGTGTGTGACCATTAACTTTGGCTGCATGTCCATTTAACAATGGCGTAAAGAGGCTCAAGCTAATGCTTACACCAATCCATTAGGCGAGGGATGGATAATTGGTATGCAGCCATTGATTTTTAGGTGGCTTCATCAACAGATGGaatgtctcccaaatggcaccattttcCCAATAcacagtgcactaattttgacctgggttcatagggctctggtcaaaagtaatgcattatACAGGcaaacagggtgtcatttgggatgcattctgcTTGTTGAGCACTACCCTGCCTACTGTAAACCATTTCTCCCATTCCCCCAGTTAAGCAAAATAAAGGGAGAGGCGGTGACAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052829.1 True 1674 mRNA 0.40 2 19927752 19930247

Neighbor

gene id symbol gene type direction distance location
LOC118965655 NA coding upstream 51764 19875933 ~ 19875988 (+)
akap7 LOC106571361 coding upstream 65726 19832891 ~ 19863963 (+)
LOC110529553 LOC106571358 coding upstream 255015 19664037 ~ 19672737 (+)
LOC110529552 LOC106571356 coding upstream 295681 19592584 ~ 19632071 (+)
LOC110529551 LOC106607757 coding upstream 384004 19540618 ~ 19543748 (+)
LOC101268947 il20r1b coding downstream 2186 19932433 ~ 19937792 (+)
LOC110529562 NA coding downstream 121293 20051540 ~ 20060435 (+)
LOC110529565 NA coding downstream 364392 20294639 ~ 20379353 (+)
LOC110529573 serc1 coding downstream 540910 20471157 ~ 20477447 (+)
LOC110529577 LOC106571536 coding downstream 705158 20635405 ~ 20637793 (+)
G682605 NA non-coding upstream 59549 19867100 ~ 19868203 (+)
G682425 NA non-coding upstream 279257 19648203 ~ 19648495 (+)
G682424 NA non-coding upstream 279711 19647753 ~ 19648041 (+)
G682359 NA non-coding upstream 289380 19637014 ~ 19638372 (+)
G682735 NA non-coding downstream 7718 19937965 ~ 19939193 (+)
G682734 NA non-coding downstream 9346 19939593 ~ 19940086 (+)
G682923 NA non-coding downstream 20300 19950547 ~ 19950908 (+)
G682925 NA non-coding downstream 21959 19952206 ~ 19952430 (+)
G682941 NA non-coding downstream 37534 19967781 ~ 19968082 (+)
G682611 NA other upstream 198081 19728833 ~ 19729671 (+)
G681909 NA other upstream 762112 19163936 ~ 19165640 (+)
LOC110529505 LOC106571335 other upstream 3032917 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 3539416 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 3541807 16384802 ~ 16385945 (+)
G683669 NA other downstream 632628 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 696703 20626950 ~ 20632899 (+)
G683845 NA other downstream 776811 20707058 ~ 20707371 (+)
G684314 NA other downstream 1146823 21077070 ~ 21078871 (+)
LOC110529590 LOC106571388 other downstream 1489101 21406192 ~ 21424564 (+)

Expression


Co-expression Network