LOC110529562


Basic Information

Item Value
gene id LOC110529562
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20051540 ~ 20060435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474414.2
gacacaactgtgggaggtcttggagtcaacatgggccagcatccctgtggaacactttagacaccttgtagagttcatgccctgacgaatttGGGGGGGGAGGACACTCAGTGTACATGGCCTCTCAAAGTCTCTTAATCCTAGGAGTACGAGAGCCAGTCGAGCGCTGAGGCTAAACTTGCGAGAGTTTGACCCGCTAGAGAGGATTCTGCCGGCCCATGAGTACAAGGATCTGGAGGAGAAACCAGGCAGGCTACAATAATTATTTGATTTCACACAAGTCTCTCCCTCCACGGGCTGATTCCACCACCCGGAGGTTGTCCGGTTTATGAAGAGTCTGAACGAAGAGAGCTGGCCACATGGAAGCTGGAGGTGATGGGTTGTCTAGATCAGAGACCAAGAAACCAAGAACAGGCTCCTCCTTGTGACTTCAACATTTTCACTGAATGATGCTACACTCAGCATGTGTCCATAATGTTGTGGTAGCCACTGTTCCTCACAGGAAAATGCAGGATTTCTGGTTCGGGAGCTGTGGAATAATGAAGCAAAAGCTGGGCTATCGTTAAAAACAAAACGTGCGCCCTGTTTTACTCCTAAAGTGCTCATTTTATTCTACATAGAAATTGGGAAAGATTTTGAGTCATTTGTTTTTAATGAACGTTTCTGAATGTGCACATATTTCACCTGTATGATTCACGTGACGTATCAGAAGATGCACGTTTGTATTTCTTTTTAGTTCGTTTTACCTCTTAAACTGTGAGTCTTTAGTAAAACCACTGGTTATGAGTTCGAAAACATTTTTTTGGAATGAATTCGAATAGGCCTACTCGTTCCAATCAAATGCAAACACCTCGTGACATGTTCTCTAGAAAGGCATTAGCGTAAATGCTTGAGGAAATGGGAAGCTGTTTGTCAATTACAGCACATTTTAATA
>XR_005052831.1
TAAACTCATTGGGCAACTGAaagtttattttgtattttttttaaataagctcCAGCTTAATTGAATCACTGCTCACACTCCTCCCACACTGTGTCCCCAGGAGTACGAGAGCCAGTCGAGCGCTGAGGCTAAACTTGCGAGAGTTTGACCCGCTAGAGAGGATTCTGCCGGCCCATGAGTACAAGGATCTGGAGGAGAAACCAGGCAGGCTACAATAATTATTTGATTTCACACAAGTCTCTCCCTCCACGGGCTGATTCCACCACCCGGAGGTTGTCCGGTTTATGAAGAGTCTGAACGAAGAGAGCTGGCCACATGGAAGCTGGAGGTGATGGGTTGTCTAGATCAGAGACCAAGAAACCAAGAACAGGCTCCTCCTTGTGACTTCAACATTTTCACTGAATGATGCTACACTCAGCATGTGTCCATAATGTTGTGGTAGCCACTGTTCCTCACAGGAAAATGCAGGATTTCTGGTTCGGGAGCTGTGGAATAATGAAGCAAAAGCTGGGCTATCGTTAAAAACAAAACGTGCGCCCTGTTTTACTCCTAAAGTGCTCATTTTATTCTACATAGAAATTGGGAAAGATTTTGAGTCATTTGTTTTTAATGAACGTTTCTGAATGTGCACATATTTCACCTGTATGATTCACGTGACGTATCAGAAGATGCACGTTTGTATTTCTTTTTAGTTCGTTTTACCTCTTAAACTGTGAGTCTTTAGTAAAACCACTGGTTATGAGTTCGAAAACATTTTTTTGGAATGAATTCGAATAGGCCTACTCGTTCCAATCAAATGCAAACACCTCGTGACATGTTCTCTAGAAAGGCATTAGCGTAAATGCTTGAGGAAATGGGAAGCTGTTTGTCAATTACAGCACATTTTAATA

Function

NR:

description
HD domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474414.2 False 934 mRNA 0.44 3 20051540 20060435
XR_005052831.1 True 890 mRNA 0.42 2 20059453 20060435

Neighbor

gene id symbol gene type direction distance location
LOC101268947 il20r1b coding upstream 113748 19932433 ~ 19937792 (+)
LOC118965499 NA coding upstream 121293 19927752 ~ 19930247 (+)
LOC118965655 NA coding upstream 175552 19875933 ~ 19875988 (+)
akap7 LOC106571361 coding upstream 189514 19832891 ~ 19863963 (+)
LOC110529553 LOC106571358 coding upstream 378803 19664037 ~ 19672737 (+)
LOC110529565 NA coding downstream 234204 20294639 ~ 20379353 (+)
LOC110529573 serc1 coding downstream 410722 20471157 ~ 20477447 (+)
LOC110529577 LOC106571536 coding downstream 574970 20635405 ~ 20637793 (+)
LOC110529580 tbc1d32 coding downstream 594724 20652867 ~ 20682999 (+)
LOC110529582 LOC106571376 coding downstream 765079 20825514 ~ 20992358 (+)
G683024 NA non-coding upstream 15228 20036009 ~ 20036312 (+)
G683017 NA non-coding upstream 21016 20030178 ~ 20030524 (+)
G683015 NA non-coding upstream 22527 20028813 ~ 20029013 (+)
G682972 NA non-coding upstream 48587 20002672 ~ 20002953 (+)
G682941 NA non-coding upstream 83458 19967781 ~ 19968082 (+)
G683065 NA non-coding downstream 49702 20110137 ~ 20110418 (+)
G683070 NA non-coding downstream 56284 20116719 ~ 20148567 (+)
G683147 NA non-coding downstream 151799 20212234 ~ 20234414 (+)
G683193 NA non-coding downstream 209686 20270121 ~ 20270348 (+)
G683196 NA non-coding downstream 218612 20279047 ~ 20279250 (+)
G682611 NA other upstream 321869 19728833 ~ 19729671 (+)
G681909 NA other upstream 885900 19163936 ~ 19165640 (+)
LOC110529505 LOC106571335 other upstream 3156705 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 3663204 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 3665595 16384802 ~ 16385945 (+)
G683669 NA other downstream 502440 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 566515 20626950 ~ 20632899 (+)
G683845 NA other downstream 646623 20707058 ~ 20707371 (+)
G684314 NA other downstream 1016635 21077070 ~ 21078871 (+)
LOC110529590 LOC106571388 other downstream 1358913 21406192 ~ 21424564 (+)

Expression


Co-expression Network