Item | Value |
---|---|
gene id | LOC110529565 |
gene name | NA |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048572.1 |
NCBI id | CM023226.2 |
chromosome length | 91622588 |
location | 20294639 ~ 20379353 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
proteoglycan 4-like isoform X46 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036984996.1 | False | 9088 | mRNA | 0.42 | 67 | 20294639 | 20379353 |
XM_036984982.1 | False | 9330 | mRNA | 0.42 | 72 | 20294640 | 20379353 |
XM_036984983.1 | False | 9321 | mRNA | 0.42 | 71 | 20294640 | 20379353 |
XM_036984984.1 | False | 9303 | mRNA | 0.42 | 71 | 20294640 | 20379353 |
XM_036984985.1 | False | 9303 | mRNA | 0.42 | 71 | 20294640 | 20379353 |
XM_036984986.1 | False | 9297 | mRNA | 0.42 | 73 | 20294640 | 20379353 |
XM_036984987.1 | False | 9294 | mRNA | 0.42 | 70 | 20294640 | 20379353 |
XM_036984988.1 | False | 9279 | mRNA | 0.42 | 70 | 20294640 | 20379353 |
XM_036984989.1 | False | 9276 | mRNA | 0.42 | 70 | 20294640 | 20379353 |
XM_036984990.1 | False | 9270 | mRNA | 0.42 | 70 | 20294640 | 20379353 |
XM_036984991.1 | False | 9246 | mRNA | 0.42 | 71 | 20294640 | 20379353 |
XM_036984992.1 | False | 9228 | mRNA | 0.42 | 69 | 20294640 | 20379353 |
XM_036984993.1 | False | 9189 | mRNA | 0.42 | 70 | 20294640 | 20379353 |
XM_036984994.1 | False | 9189 | mRNA | 0.42 | 68 | 20294640 | 20379353 |
XM_036984995.1 | False | 9174 | mRNA | 0.42 | 68 | 20294640 | 20379353 |
XM_036984997.1 | False | 8200 | mRNA | 0.42 | 69 | 20294642 | 20379353 |
XM_036984999.1 | False | 8184 | mRNA | 0.42 | 69 | 20294643 | 20379353 |
XM_036984981.1 | False | 9256 | mRNA | 0.42 | 73 | 20294645 | 20379353 |
TU778196 | True | 5131 | lncRNA | 0.37 | 7 | 20369178 | 20379330 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110529562 | NA | coding | upstream | 234204 | 20051540 ~ 20060435 (+) |
LOC101268947 | il20r1b | coding | upstream | 356847 | 19932433 ~ 19937792 (+) |
LOC118965499 | NA | coding | upstream | 364392 | 19927752 ~ 19930247 (+) |
LOC118965655 | NA | coding | upstream | 418651 | 19875933 ~ 19875988 (+) |
akap7 | LOC106571361 | coding | upstream | 432613 | 19832891 ~ 19863963 (+) |
LOC110529573 | serc1 | coding | downstream | 91804 | 20471157 ~ 20477447 (+) |
LOC110529577 | LOC106571536 | coding | downstream | 256052 | 20635405 ~ 20637793 (+) |
LOC110529580 | tbc1d32 | coding | downstream | 275806 | 20652867 ~ 20682999 (+) |
LOC110529582 | LOC106571376 | coding | downstream | 446161 | 20825514 ~ 20992358 (+) |
LOC110529583 | LOC106571378 | coding | downstream | 630968 | 21010321 ~ 21116297 (+) |
G683197 | NA | non-coding | upstream | 14933 | 20279478 ~ 20279706 (+) |
G683196 | NA | non-coding | upstream | 15389 | 20279047 ~ 20279250 (+) |
G683193 | NA | non-coding | upstream | 24291 | 20270121 ~ 20270348 (+) |
G683147 | NA | non-coding | upstream | 60225 | 20212234 ~ 20234414 (+) |
G683070 | NA | non-coding | upstream | 146072 | 20116719 ~ 20148567 (+) |
G683466 | NA | non-coding | downstream | 33556 | 20412909 ~ 20413122 (+) |
G683477 | NA | non-coding | downstream | 57943 | 20437296 ~ 20439013 (+) |
G683599 | NA | non-coding | downstream | 129546 | 20508899 ~ 20509112 (+) |
G683633 | NA | non-coding | downstream | 151506 | 20530859 ~ 20531075 (+) |
G683671 | NA | non-coding | downstream | 184134 | 20563487 ~ 20563790 (+) |
G682611 | NA | other | upstream | 564968 | 19728833 ~ 19729671 (+) |
G681909 | NA | other | upstream | 1128999 | 19163936 ~ 19165640 (+) |
LOC110529505 | LOC106571335 | other | upstream | 3399804 | 16893102 ~ 16921697 (+) |
LOC110529493 | LOC106571284 | other | upstream | 3906303 | 16387411 ~ 16390869 (+) |
G678417 | LOC106571283 | other | upstream | 3908694 | 16384802 ~ 16385945 (+) |
G683669 | NA | other | downstream | 183522 | 20562875 ~ 20563434 (+) |
G683757 | LOC106571373 | other | downstream | 247597 | 20626950 ~ 20632899 (+) |
G683845 | NA | other | downstream | 327705 | 20707058 ~ 20707371 (+) |
G684314 | NA | other | downstream | 697717 | 21077070 ~ 21078871 (+) |
LOC110529590 | LOC106571388 | other | downstream | 1039995 | 21406192 ~ 21424564 (+) |