LOC110529573 (serc1)


Basic Information

Item Value
gene id LOC110529573
gene name serc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20471157 ~ 20477447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611912.2
CCTTCAATTGGATGCGATCCACGAACCAAATCCTAAGAAGAAGCGCGATTGTATTGTAAACAGACGAAAAGCATCCATCTTTTACAGCACAGAGAAGTCTTATTTCGGCAAAACATCATGGGGGCCGTTCTCGGACTGTGTTCCATGGCGAGTTGGATCCCCTGCCTGTGTGGCACTGCCCCCTGTCTGCTGTGCAAATGCTGCCCCAGTGGGAATAACTCCACTGTCACCCGACTCATCTATGCCTTCTTCCTCCTGTTGGGTGTGGGCATCGCATGCATTATGCTCATGCCAGGGATGGAAGAGCAGCTCAAGAAGATTCCAGGATTCTGTGATGGGGGAATGGGTACATCAATTCCAGGTGTGGAGGGTCATGTCAACTGTGATGTCTTGGTTGGCTACAAGGCTGTGTACCGTATCTGCTTCGGCATGGCAATGTTCTTCCTGCTCTTCTCCCTCCTCATGGTCAAAGTCAAGAGTAGCCAGGATCCCAGAGCTACTATACACAATGGGTTTTGGTTCTTCAAGTTTGCTTCTGCGACTGCCATTACCATTGGTGCATTCTTCATTCCAGAGGGTCCCTTCACAACTGTTTGGTTCTACATAGGAATGGCTGGAGCTTTTTGCTTCATCCTGATCCAGCTGGTCCTGCTGATAGACTTTGCCCACTCCTGGAATGAGTCCTGGgtggagaagatggaggagggCAACTCTCGCTGCTGGTATGCAGCTCTGCTGTCTGCTACAACCATCAACTACATCCTGTCCCTGGTGTCTCTGATAATGTTCTACGTCTACTACACCCACACTGACGGCTGCACTGAGAACAAGGCCTTCATCACTGTCAACATGCTGCTGTGTGTCGGAGCCTCGGTCATGTCCGTCCTGCCCAAGATTCAgGAGTCCCAGCCAAGGTCTGGGTTGCTGCAGTCTTCCATTGTGACTCTGTACACCATGTATCTCACCTGGTCTGCCATGACCAATGAGCCAGACAGGAAATGCAACCCAAGCTTGCTGGGTATCATTGGCCTCAACAACACCACCCCAGCTGGTAAGGACCACCCTGTTGTTCAGTGGTGGGATGCCCAGGGTATTGTGGGGCTGGTCCTGTTCCTGATGTGTGTTCTGTACTCAAGCATCCGCAACTCCTCCAACACCCAGGTGAACAAACTGACTCTGACCAGTGACGAGTCTTCTCTGATTGAGGATGGCCACCACCCTGAGAACTTTGACGTGGAAGATGGTGAGAACCGGGCCGTGGACAACGAGAAGGAAGGAGTCACCTACAGCTACTCCTTCTTCCACTTCATGCTCTTCCTGGCCTCCCTCTACATCATGATGACCCTCACCAACTGGTACAGCCCTGACTCCAACTATGAGACAATGACCAGCAAGTGGCCCTCGGTGTGGGTGAAGATCTCCTCCAGCTGGATCTGCATTGCCCTCTATGTGTGGACCCTAGCAGCCCCACTCGTCCTGGTCAACCGAGACTTCGACTGATGATCTAAAGAATGAGGGGGGCAATCATTTGCTCATGATCATTTTGAATATTCAACTCGTAAGGTGAACAAGCTCTGTAAATACTGTATGTGCATTCCCCACCCACCCTTTTTGTTAATACACTGCATGCATGCTATAGTATTGAATACATGGGTGTTTTATGTACCATGTTTTATCCTATTGCAAAGTTAAAGAATGTTTTTTGCTGAGTTGGGGTTGTAAAGGTAGCTGGGGCTTGGAGAGATGGTCAGTGAAAGGAGGACTCTTTGTCAACTGTAATTGACTCTGGATAAGCGACATTCAGAAAGAACCATTGATTTGTTACAAAATGGGCAAGACTGCTTGATGTTTGATAATATGCTACACTTTGCTTTAAGTTATGCATATGTAGCAATGAAGTGCAGGGTTTCAGATATTAGCTCATTGTTGTAATCCTAGGTTCATTTCCATCGGTGATGTACCAGTGGCATATTATAGGCTAATCTACCATCATGCTTTGCTGTGCTTTCCTTTTCAGAACATCCTCCCAAATTGCAAAACTGAAACTACAGCTTTCCCTTTTGTGATCATGCACATCTTGTTGTAGGTCAGATATTAGTCTTTCAGTTTTGTGTACCTTGTTACTTATGATTCACACTGGAGTTATCTTAATGTAAAATACTGATGTTCAGTGGATAAATGATTTTGTAGATGCTTTAACATACTAGAAATGTGTATTCAGTATTTCCAGCAGACTGACAATTGTTTGTGTTTTGACATGTATTAAAGTGCATTGTAACCCACCTTTTAATAAACTTTAAGGCAAAGCATG

Function

NR:

description
serine incorporator 1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23544 SERINC1_3; serine incorporator 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611912.2 True 2311 mRNA 0.47 10 20471157 20477447

Neighbor

gene id symbol gene type direction distance location
LOC110529565 NA coding upstream 91804 20294639 ~ 20379353 (+)
LOC110529562 NA coding upstream 410722 20051540 ~ 20060435 (+)
LOC101268947 il20r1b coding upstream 533365 19932433 ~ 19937792 (+)
LOC118965499 NA coding upstream 540910 19927752 ~ 19930247 (+)
LOC118965655 NA coding upstream 595169 19875933 ~ 19875988 (+)
LOC110529577 LOC106571536 coding downstream 157958 20635405 ~ 20637793 (+)
LOC110529580 tbc1d32 coding downstream 177712 20652867 ~ 20682999 (+)
LOC110529582 LOC106571376 coding downstream 348067 20825514 ~ 20992358 (+)
LOC110529583 LOC106571378 coding downstream 532874 21010321 ~ 21116297 (+)
mcm9 LOC106571380 coding downstream 639932 21117379 ~ 21136825 (+)
G683477 NA non-coding upstream 32144 20437296 ~ 20439013 (+)
G683466 NA non-coding upstream 58035 20412909 ~ 20413122 (+)
G683197 NA non-coding upstream 191451 20279478 ~ 20279706 (+)
G683196 NA non-coding upstream 191907 20279047 ~ 20279250 (+)
G683599 NA non-coding downstream 31452 20508899 ~ 20509112 (+)
G683633 NA non-coding downstream 53412 20530859 ~ 20531075 (+)
G683671 NA non-coding downstream 86040 20563487 ~ 20563790 (+)
G683700 NA non-coding downstream 109160 20586607 ~ 20586818 (+)
G683759 NA non-coding downstream 156034 20633481 ~ 20634396 (+)
G682611 NA other upstream 741486 19728833 ~ 19729671 (+)
G681909 NA other upstream 1305517 19163936 ~ 19165640 (+)
LOC110529505 LOC106571335 other upstream 3576322 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 4082821 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 4085212 16384802 ~ 16385945 (+)
G683669 NA other downstream 85428 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 149503 20626950 ~ 20632899 (+)
G683845 NA other downstream 229611 20707058 ~ 20707371 (+)
G684314 NA other downstream 599623 21077070 ~ 21078871 (+)
LOC110529590 LOC106571388 other downstream 941901 21406192 ~ 21424564 (+)

Expression


Co-expression Network