Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529586 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 21187530 ~ 21197198 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: cardiac phospholamban-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005052832.1 | False | 1584 | mRNA | 0.44 | 2 | 21187530 | 21197171 |
| XM_021611927.2 | False | 1960 | mRNA | 0.47 | 3 | 21187530 | 21197192 |
| XM_021611928.2 | False | 574 | mRNA | 0.58 | 2 | 21189811 | 21197198 |
| TU779641 | False | 1505 | lncRNA | 0.44 | 2 | 21187535 | 21197097 |
| TU779642 | True | 1860 | lncRNA | 0.47 | 3 | 21187535 | 21197097 |
21,186,000
21,188,000
21,190,000
21,192,000
21,194,000
21,196,000
21,198,000
21,200,000
21,202,000
21,204,000
21,206,000
21,208,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118965500 | NA | coding | downstream | 534986 | 20650227 ~ 20652544 (-) |
| LOC118965600 | NA | coding | downstream | 540001 | 20644656 ~ 20647529 (-) |
| LOC110529578 | cx32 | coding | downstream | 543332 | 20642316 ~ 20644198 (-) |
| LOC110529576 | LOC106571374 | coding | downstream | 546115 | 20637866 ~ 20641415 (-) |
| LOC110529575 | LOC106571520 | coding | downstream | 552301 | 20633327 ~ 20635229 (-) |
| si:dkeyp-114g9.1 | fbos | coding | upstream | 34094 | 21231292 ~ 21241150 (-) |
| LOC110529587 | LOC106571386 | coding | upstream | 49954 | 21247152 ~ 21385603 (-) |
| LOC110529588 | ngbr | coding | upstream | 195140 | 21392338 ~ 21401110 (-) |
| LOC110529589 | LOC106571387 | coding | upstream | 204745 | 21401943 ~ 21406071 (-) |
| LOC110529592 | LOC106571389 | coding | upstream | 228421 | 21425619 ~ 21469294 (-) |
| G684268 | NA | non-coding | downstream | 178905 | 21008334 ~ 21008625 (-) |
| G684258 | NA | non-coding | downstream | 188733 | 20998486 ~ 20998797 (-) |
| G684247 | NA | non-coding | downstream | 195241 | 20990098 ~ 20992289 (-) |
| G684015 | NA | non-coding | downstream | 366143 | 20821152 ~ 20821387 (-) |
| G683989 | NA | non-coding | downstream | 386629 | 20800625 ~ 20800901 (-) |
| G684714 | NA | non-coding | upstream | 78978 | 21276176 ~ 21276701 (-) |
| G684690 | NA | non-coding | upstream | 90554 | 21287752 ~ 21291905 (-) |
| G684789 | NA | non-coding | upstream | 186720 | 21383918 ~ 21384286 (-) |
| G684791 | NA | non-coding | upstream | 189932 | 21387130 ~ 21387516 (-) |
| G684792 | NA | non-coding | upstream | 190618 | 21387816 ~ 21388049 (-) |
| G681659 | NA | other | downstream | 2395393 | 18791230 ~ 18792137 (-) |
| G679471 | NA | other | downstream | 4073002 | 17113543 ~ 17114528 (-) |
| G679210 | LOC106571290 | other | downstream | 4557271 | 16625090 ~ 16630259 (-) |
| G679087 | NA | other | downstream | 4754516 | 16432621 ~ 16433014 (-) |
| G676635 | LOC106571254 | other | downstream | 6671002 | 14508329 ~ 14516528 (-) |
| G684844 | NA | other | upstream | 281568 | 21478766 ~ 21479203 (-) |
| LOC110529207 | sprtn | other | upstream | 723229 | 21920427 ~ 21926307 (-) |
| G685953 | NA | other | upstream | 961832 | 22159030 ~ 22161042 (-) |
| LOC110529643 | LOC106571435 | other | upstream | 2419709 | 23614938 ~ 23659111 (-) |
| G687890 | NA | other | upstream | 2438111 | 23635309 ~ 23637408 (-) |
