XLOC_025750


Basic Information

Item Value
gene id XLOC_025750
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52806272 ~ 52883424 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052380
ATCGTGCGTGCGCAGCTCGAGTCTTCACTCCATCACATAAAGCGCGCGCctgaacatcacacacacacagtctggctCTGCTTGAGCGTCACTCCGTCTTGGACTATAATAACACTGAAGTTTGGCTTTTGGAGGTCTGTTGCCCGTCCCCTTCTTCAAAGGTATTTTGATGTTACCTACAGAAATCTCAGGAGGAGTGTGTTTCAGCACAAGTCAGCACTCCAAA
>TCONS_00050618
ctCTGCTTGAGCGTCACTCCGTCTTGGACTATAATAACACTGAAGTTTGGCTTTTGGAGGTCTGTTGCCCGTCCCCTTCTTCAAAGGTATTTTGATGTTACCTACAGAAATCTCAGGAGGAGTGTGTTTCAGCACAAGTCAGCACTCCAAAGAAGGAAGGAGCGGAATGAAAACAGAAGAAAACCAGTCATGTCTTCAGCAGGCCCCCTCCGCCACACCTTACGCTGACTCCTGTTCTCCTCCACCAGACCATGTGGGAGGAGGTGAGGTGTGCGCAGGCTGCGAGTCCCCCATCGCGGACCGGTTCCTGCTGCGCGTCAATGAACTGTCCTGGCATGAGACCTGTGTGAAGTGTGCGGTGTGTCGCAGCGCTCTGAGCGGGACCTGCTACTGTCGGGACAGACTGCTCTACTGCAAGCACGATTACGAGAAgtTGTTTGTGCGTAAGTGCAGCGCGTGTCTGCAGGCGATCGGCCGCTCAGAGCTCATCATGCGAGTGTTGGGACAGGTGTATCACCTGGGCTGCTTCAGCTGCTGCGAGTGTGAGCGCCGCCTGCAGAGAGGAGATGAGTTTGTGCTGAAGGAGGGACAGCTGCTCTGCAGAGGAGACTAcgagaaggagagagagatgcTGGCCGCCATCAGCCCGGCACCCACAGAGTCAGTAAAGAGTGAGGATGAGGAGGGTGGTGGTGTCTCTGTCGGAGGAAAGGCTGGGGATGATGGAAAGGAGCACAAGAGATCCAAGAGGCCCCGGACCATCCTGACCACACAACAGCGGCGCGCCTTCAAGGCTTCCTTCGAAGTGTCTTCCAAACCCTGCCGAAAGGTCAGAGAAACTCTGGCAGCTGAGACTGGACTGACGGTCAGGGTCGTGCAGGTGTGGTTCCAGAATCAGAGGGCAAAGATGAAGAAGATCGCCCGCagacagcagcagcaacagcagcagcaagAACAGGAGCAGATGGGGGGCTCCAGACGGGGCCCGAGCAGAGGGGGGCGCCAGAGTAACGACGACAGCGAGGATGGCTCCAGCACTCACGGACTGGACGGTCTGCTCTCATATTCCTCTCTGCCTCGACAACAACTGCTGGCTATAGATCCAAACATATATGGCAGCGAGCAGTTTAGACACGGCCTCACGCCTCCACAGCTGGGCCCTGACCAGATGCACTCCTATGACTCAGAGACGGTTTTCCATGACCTAGACAGTGATGGAAGCCTCAGTCATCTTGGCGACTGTCTCTTGTCGACTGCGGATGGCAGCGTTCTGGCAGGCCGCATAGGAAACCCCATCGATCGCCTCTACTCCATGCAGAACTCCTACTTTACTTCATGAC
>TCONS_00050619
ATGTTACCTACAGAAATCTCAGGAGGAGTGTGTTTCAGCACAAGTCAGCACTCCAAAGAAGGAAGGAGCGGAATGAAAACAGAAGAAAACCAGTCATGTCTTCAGCAGGCCCCCTCCGCCACACCTTACGACCATGTGGGAGGAGGTGAGGTGTGCGCAGGCTGCGAGTCCCCCATCGCGGACCGGTTCCTGCTGCGCGTCAATGAACTGTCCTGGCATGAGACCTGTGTGAAGTGTGCGGTGTGTCGCAGCGCTCTGAGCGGGACCTGCTACTGTCGGGACAGACTGCTCTACTGCAAGCACGATTACGAGAAgtTGTTTGTGCGTAAGTGCAGCGCGTGTCTGCAGGCGATCGGCCGCTCAGAGCTCATCATGCGAGTGTTGGGACAGGTGTATCACCTGGGCTGCTTCAGCTGCTGCGAGTGTGAGCGCCGCCTGCAGAGAGGAGATGAGTTTGTGCTGAAGGAGGGACAGCTGCTCTGCAGAGGAGACTAcgagaaggagagagagatgcTGGCCGCCATCAGCCCGGCACCCACAGAGTCAGTAAAGAGTGAGGATGAGGAGGGTGGTGGTGTCTCTGTCGGAGGAAAGGCTGGGGATGATGGAAAGGAGCACAAGAGATCCAAGAGGCCCCGGACCATCCTGACCACACAACAGCGGCGCGCCTTCAAGGCTTCCTTCGAAGTGTCTTCCAAACCCTGCCGAAAGGTCAGAGAAACTCTGGCAGCTGAGACTGGACTGACGGTCAGGGTCGTGCAGGTGTGGTTCCAGAATCAGAGGGCAAAGATGAAGAAGATCGCCCGCagacagcagcagcaacagcagcagcaagAACAGGAGCAGATGGGGGGCTCCAGACGGGGCCCGAGCAGAGGGGGGCGCCAGAGTAACGACGACAGCGAGGATGGCTCCAGCACTCACGGACTGGACGGTCTGCTCTCATATTCCTCTCTGCCTCGACAACAACTGCTGGCTATAGATCCAAACATATATGGCAGCGAGCAGTTTAGACACGGCCTCACGCCTCCACAGCTGGGCCCTGACCAGATGCACTCCTATGACTCAGAGACGGTTTTCCATGACCTAGACAGTGATGGAAGCCTCAGTCATCTTGGCGACTGTCTCTTGTCGACTGCGGATGGCAGCGTTCTGGCAGGCCGCATAGGAAACCCCATCGATCGCCTCTACTCCATGCAGAACTCCTACTTTACTTCATGA

Function

GO:

id name namespace
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0150034 distal axon cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131213-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in diencephalon; epiphysis; hindbrain; midline column; and superior raphe nucleus.

Ensembl:

ensembl_id ENSDARG00000077915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052380 False 226 lncRNA 0.49 2 52806272 52809710
TCONS_00050618 False 1340 mRNA 0.56 9 52806347 52883424
TCONS_00050619 True 1221 mRNA 0.57 9 52806441 52883423

Neighbor

gene id symbol gene type direction distance location
XLOC_025749 gmip coding upstream 4970 52737565 ~ 52801302 (+)
XLOC_025748 colgalt1 coding upstream 74238 52702700 ~ 52732034 (+)
XLOC_025747 pgls coding upstream 105662 52684556 ~ 52700610 (+)
XLOC_025746 BX511096.1 coding upstream 186097 52620058 ~ 52620175 (+)
XLOC_025745 slc27a1a coding upstream 202589 52545014 ~ 52603683 (+)
XLOC_025752 atp13a1 coding downstream 16377 52899801 ~ 52952026 (+)
XLOC_025753 dsn1 coding downstream 70065 52953489 ~ 52980049 (+)
XLOC_025754 pbx4 coding downstream 116538 52999962 ~ 53076469 (+)
XLOC_025755 brd4 coding downstream 232748 53116172 ~ 53224280 (+)
XLOC_025756 pet100 coding downstream 345260 53228684 ~ 53231344 (+)
XLOC_025429 BX649540.1 misc upstream 22557236 30248739 ~ 30249036 (+)
XLOC_025739 NA non-coding upstream 414067 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 417233 52377578 ~ 52389039 (+)
XLOC_025737 BX511132.1 non-coding upstream 426800 52367302 ~ 52379472 (+)
XLOC_025735 NA non-coding upstream 542126 52224103 ~ 52264146 (+)
XLOC_025761 NA non-coding downstream 643541 53526965 ~ 53652401 (+)
XLOC_025764 CU633748.1 non-coding downstream 1184099 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 1227965 54111389 ~ 54111972 (+)
XLOC_025766 NA non-coding downstream 1387279 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 1400343 54283767 ~ 54284185 (+)

Expression


Co-expression Network