LOC110529587 (LOC106571386)


Basic Information

Item Value
gene id LOC110529587
gene name LOC106571386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21247152 ~ 21385603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611930.2
CCAGTCGCCTCTCATAATCACCGCACAGTCTGAAGTAGGCATTCAGAAAATGCACACTGACGAACCGGGGTACCTCTGCAAACATTTCATTAGGGTACAGGTGCATCTTTCATGAACTCCCCGCGTGTGTGGCCAACACACATTCTTCACTTTTTGTAAATATAGCAGCGTTATCATCTTCACCTGTGTGAACCATGGAATGAATGCTGAGGTTGTCCATCGCGCGCACCGATAATCGGATCTAGTCCCTCGTGGAGTATCCGAGACCTACGTCCTCTCCTTGCACGGAGCAGAATGCACCCTGGTTTCTGGTCGTTAAATGTTTAGTTCAGAGATGATATCCTCGCAGCAGAATCATGTTGTCAACACCATTGAGACCATGCCTCCAGAAACCATCACGGCATCGCCGACCCTGGTTCAAAGGATAAGAAAAGTGTTTAGCAGggAACTTCTGGTAACTCTGGCTCTGGGCCAGGTCCTGTCTCTGCTCGTCTGTGGCATCGGGCTGACCAGCAAGTACCTGGCTCATGAATACCACGCCAACACGCCCGTGTTCCAGAGCTTTCTCAACTACATCCTGCTGTTCCTAGTCTACACCACCACGCTCGCCGTCAGGCAAGGTGAGGAGAATCTGCTGGCAATACTGAAGAGGCGATGGTGGAAGTACATGATTCTGGGACTAATAGACATCGAGGCTAACTACCTGGTTATCAAAGCCTACCAATACACCACACTAACAAGCGTACAGCTCTTAGACTGTTTCACCATCCCCGTGGTGCTGCTGCTGTCCTGGTTCTTCCTGCTGGTGAGGTACAAGGCCGTGCATTTTGTGGGCGTTGGGGTGTGTCTGCTGGGCATCGGCTGCATGGTGGGGGCAGATGTCCTGGTGGGAAGACAGCAGGGCctagGGGACCATAAGCTCCTTGGGGACCTGCTGGTTCTGGGAGGTGCCATGCTCTATGGAATCTCTAATGTGTGTGAGGAGTTCATCGTTAAGAACCTGAGCAGGGTGGAGTTCCTGGGCATGATGGGACTGTTCGGCTCTTTCTTCAGCGGCATTCagctGGCCATCATGGAACACAAGGAGCTGTTAAAGGTGCAGTGGGACTGGCAGATTGGGTTGCTGTATATCGGCTTCAGTGCCTGCATGTTTGGCCTGTACAGCTTCATGCCCGTGGTCATTAGAAGGACCAGCGCCACGTCGGTCAATCTCTCTCTGCTGACCGCTGACCTCTACAGCCTGTTCTGCGGCCTCTTTCTGTTCCAGTACAAGTTTTCagggctctacctcctgtccttCGTCATCATCATCCTGGGTCTGGTgttctacacctcctcctccacctatgTGGCACAGGACCCGCGCGTCTACAAGCATTTCCGCAACGCCGGCCACCCCATCACGGACACGCCCACTCTGGGGCCCCTGGAACCCTCGGTGACCTATACCAGCCTAAGgcaggagatagaggaggagccTCGCATCAGGGTGGCCTGAGAGGGTGGGGCCTAATCATCCACTGCCCCACCTCCCCAGATTCTGTACAGAGAGAAGGATCACTGAATGATTAAAAAAATGATCGAAAACATGTAGCAAACACGCAAAAGTACACTGTGATCGCAAACTGTGAATAGATAGCAGTGGCTATTTCTGATTTTGAAGATTTGTTTCATGTATAGAAATATACTGTTACCCCATCACGTTCCCTCGTACTGTACATTTGACATGTTTAGAAGGTTTTGTGCTTAAGACTTGTGTAAATGCTCAATTGTGACTGTTTCCTTTTTTACATGAGCACAAAACGTTATTGCATTTTAAGCTTTGAGTTTGCGCTGTGGGTTATTTCAGTGTTTAATTGTTCCTTCAAATCGATCTCTTTTTGTAAAACTACCCCGTTAAAGTATCATGTCCAGAGGTACGATAAAGTAATATACAGACTTAACATGAGTCAGTGCCTTACTATGTATTAATGTTGTGTGTTAGAACTGCACATTATAAATGGCCCCTTCCCTGTCCAGCATTGTCTGAGGACATTGGATACTGATGCAGCCCCTACAGTTATAGtcatttataaactgggtggttcgagccctgaatgctgattggctgacagccgtggtatatcagaccatataccatgggtatgacaaaactcttatttttactgctctaattgtgttagtaaccagtttataatttgTAATAAGGCATCtcggggggttgtggtatatggccaatataccactgctaagggctgtatccagggacTCCACGttgtgtcgtgcttaagaacagtccTTAACCGTAGTGTATTGGCCATACACCATACCTCCTTGTGCCTTATTGCATAGGGTGGCACATAAatagcccagcgttgtccgggttagggtttggctggggtaggccgtcattgtaaataagactttgttctttactgacttgcctagttaaaaaaaatatataaattaaatTGCTTAAATAAACTATACTTAGAACACTGTGGATTGCGTCTCTGCAGTACATTTAGTCTGACCTTACAACTACTTACCCACAGATATGACAACTTTCCATGTTGGAACCATTATCTCTTGAGGCAAATGGCTATAAAGACAAATATATCAGGATTGCTAATGGAGTGAAGTGATTATTGTACATTTGGTTCATTGTTCATATGTACTGTACACTGAACTCTAGTTGATAGAAAAATAAGAACTGATTATGAAAATGTGATGATTACAATGCACTTGTCATTCCAGAACTGTGCTGTTCTCTTTTATTGATTGTCCAGCTGTTGGACTGCATTTTAAGTGTGTTGCTTTTTATTCCCTGCTGGATTTTATCCAAAACACATTAATCAAATGATTTGGAACAGATTTATTTCAAAGTATTATTATTCCCTGTTTTTTGtattatatttgatttattttggtgTATTGGAGCACTTGCTGTCAGAAACGTTACCTAAATTAAAGTGTCTTTGTCTGAAA

Function

NR:

description
solute carrier family 35 member F1-like

GO: NA

KEGG:

id description
K15287 SLC35F1_2; solute carrier family 35, member F1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611930.2 True 2988 mRNA 0.46 8 21247152 21385603

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-114g9.1 fbos coding downstream 6002 21231292 ~ 21241150 (-)
LOC110529586 NA coding downstream 49954 21187530 ~ 21197198 (-)
LOC118965500 NA coding downstream 594608 20650227 ~ 20652544 (-)
LOC118965600 NA coding downstream 599623 20644656 ~ 20647529 (-)
LOC110529578 cx32 coding downstream 602954 20642316 ~ 20644198 (-)
LOC110529588 ngbr coding upstream 6735 21392338 ~ 21401110 (-)
LOC110529589 LOC106571387 coding upstream 16340 21401943 ~ 21406071 (-)
LOC110529592 LOC106571389 coding upstream 40016 21425619 ~ 21469294 (-)
LOC110529593 LOC106571390 coding upstream 113862 21499465 ~ 21504647 (-)
LOC110529205 LOC106571539 coding upstream 154279 21539882 ~ 21545761 (-)
G684268 NA non-coding downstream 238527 21008334 ~ 21008625 (-)
G684258 NA non-coding downstream 248355 20998486 ~ 20998797 (-)
G684247 NA non-coding downstream 254863 20990098 ~ 20992289 (-)
G684015 NA non-coding downstream 425765 20821152 ~ 20821387 (-)
G684791 NA non-coding upstream 1527 21387130 ~ 21387516 (-)
G684792 NA non-coding upstream 2213 21387816 ~ 21388049 (-)
G684767 NA non-coding upstream 36191 21421794 ~ 21424539 (-)
G684837 NA non-coding upstream 86012 21471615 ~ 21471826 (-)
G681659 NA other downstream 2455015 18791230 ~ 18792137 (-)
G679471 NA other downstream 4132624 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 4616893 16625090 ~ 16630259 (-)
G679087 NA other downstream 4814138 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 6730624 14508329 ~ 14516528 (-)
G684844 NA other upstream 93163 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 534824 21920427 ~ 21926307 (-)
G685953 NA other upstream 773427 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 2231304 23614938 ~ 23659111 (-)
G687890 NA other upstream 2249706 23635309 ~ 23637408 (-)

Expression


Co-expression Network