LOC110529589 (LOC106571387)


Basic Information

Item Value
gene id LOC110529589
gene name LOC106571387
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21401943 ~ 21406071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611932.2
CGTTGACAATTGCAGTTGAATGCTTTGCTTTTCACTCTTGTTTTTGTTGACCACTCCCTGTGTCTAAAATATATTGTTGGAGAGTGTAAACATTTCTTATGTCATTGTAGGCATGGTGTGAGTGGCTCTGCAGACAGTATTACATATTTTACATAGCTACTTTTTgcattaaatacattatttttaATTGTATTTGCTAACCTCTTATCTCACACCATTGTTGTTGGGATAATCAgacaaatattttatttatttaacgttCATGAGAGATAAATATACATTCCCTGTGTGGCACTACAGAAGGCAATCCTTCAGTTAAAAGACAAGTGGTCGTTGTTCATTAATCTGTATTAAATGTTACTAATAACATATGCTATTTAGCCTTCACTTTTATCCAAATTTCCTCCTCTGTCTATTTGAATACTCTGTCTGCCACTGTCTTGGAGTTGCCATATATTTGCATGTTATGTTTTAAGATATGTTAGATGAACTACCTTAACCCTGATTACTGCATGCACTTAGTCACAAGTGCATGCAGTAATCAGGGTTAATGTAGTTCATCTAACATATCTTAAAACATAACATGCAAATATAtggcaactccttcaagacagtggCAGACAGAGTATTCAAATAGACAGAGGAGGAAATTGTATTTGTTTAACTGAATGGGTTGTAAATGGTTTATCAGCAAGTTTCTCACGTCCGCAAACAGAAGGGCTATCTATTACTGTTTGTGTCAGTTCCTTGTCGgtgtcaaatgttgttttttaaccAAGATAAACATCTCTGCCATTGTTCCAAATGAAACAGAGCACCTACTCTCTCCCACATAATCCTTGCTGAGGTATTTAAACCCCAGAGCAAGTGGGAGTGCTGTTCTTTTTTACTGAGATGCCCAACTAGGCTGGGTGTTCATGATGTGGTTTCTCATGATCTTGCTGGCAAGTATTACATTGCATACTCTCGTGTGCATCTGTAGCAATGTTTGTccaaagaagtgtgtgtgtgatagtgcaAAGTCAGTGCAGTGTTTCAGGTTGCAGTCTTTTCCCACTGGAATCACTAAAGATGTGAGGAAACTAAACCTGGGATacaatcacatcaagcaactAAAGGGTAGAGACATATCtggcctgacagagctggaggaAGTGATAATTTCATCCTGTGGAGTGGAAGTGGTGGAGGCCAATGCTCTCAGGGCTCAGGGGCTACTAAGAAGCCTGGATCTACAGAAGAATAAACTGCATCAGATCCCCCGTGGTCTCCCACCCAGCCTGGAGACCCTCAACGTGGGCCACAACAGGATCACAGGCCTCCAGGAGTCTGTCTTTGAGGGGCTGAAGAAACTACGCCTGCTTGATCTTCAGAACAACCAGATCACCAACCTGCGTTCCAACACCCTCTCCACCCTGAAGAAGTTGGAGTGCCTTTACCTGGATGGAAATCAAATTGAGACAGTTCAAGGTGCTCTGAGACTCCCCCAACTGAATCTGTTGAGCTTGGGGAACAACAAGATCCCCTGTTTTCCCTCATCCTTTTTCACACCACTACAGTCCTTGACGACACTGCGTTTACCAGGGAACCTCCTATCAAGAGTCCCCCTCGATCTCCCTCACACTCTGTCCTACCTGAACTTGGACAGGAACCAAATACGAGCACTGAGAAACCGTGAGATGGGCCAACTCCGCAACCTCACGTCTCTGTCTGCGTCCTACAATAGGTTGGTTTCTGTGGATGGTGGCCTTCGCTTGCCCAACCTCACAGTGCTGGAACTGCCAGGAAACCAGCTGAGGGTGCTGCCCAGTAGACTGAGCCCCAAACTGGAAAAACTGGACTGCAGACAGAACTCCATTCAGGAAGTCACCTTCCAGCACCTGTCTGGAATGAAACAGCTGAAGCATCTCTTCCTAGAGAATAACACCATCTGGAACTTTGAAGCTAATGCTCTGAGGAACAGCGTTCACATAACCAACCTGGCTCTGGAAcagaatctcctctcctctattccagACGGGCTTCCAGAGAGTCTGATCCGCCTGGACTTGAAAGGGAACCGCATCGAGGCCGTCCAGGAGCAGGAGCTGAGATCCCTGAAGCGCCTGCAGGTGTTGAACTTGAGGAGAAACAAGCTGACCTCCCTCCCCCAGATCACCCTGGATCTGCTTCCACGGCTGAGGACCGTCTACCTAGATGGGAACCCCTGGAACTGCAGCTGTGAGCTCCTGGGGGTCAAGAGGACCCTGCTGGCCAGGAGGGTGGAGATCCCTAAAGAGCTGTGTAACGAGCATGTGAGTGAGCCGGGGGACAGCTGGAGAGCGTACCTGATGGCCCAGGACAGATGTGAGGAGTACTTCATGGAAACCGCCCCTGAGGACCAAGTGGAGCAGACAGACACTGAGGAGTATTATGACTATGATTCGTAGATGGAGAAAATAAATGTAGCAGGGGAATTTCATGTTTAGCTGAACATACTGGGTATTTTGAATGTTTTAACATTTTACTGTAGTTTGGCAATTAATACTAAGGAAGTTACCTTTAGCTGTGTAGTCAATAGAAAAACATTAAACTACTGTATTAACAAACAGCTATTGCAATATACATTGGTAAATAGGTATATGTAGAATATACCTTAAATACCTAATGtaaaataacataataataaataaacaagTTTCATTACAGTTTTCATTTACTTTGCACAAACAGTTGCAAATAATCTGCTATAGGATAAGCCATGTAAttacttttgtgtgtgtttggtttgttCTGAATTTAATTGGCATCTTAGTTGATACTGTAAAAAAGTGTTATGCACACTTTGCAAAAACAATAGACAAATAAATAATAGCTACAGATAACTAACGACTTGCACTTCTAGGGTGCCTGACCTGCACGGTTTCCAACCggtttaaacctaaccttaagcctaactttaaccacactgctagccttattcctaactctaaccttaaattaagcaCAAACagcaaatgttttgttttcatgTTTGTTAATGAatgtttacaatatagccaattgtGACATTGTggatgtggtaactagtggacACCTCTAGGTTCTGACAAAAAGAACAACCAGAGTATCTCGGCATGCGTTTGAGGGGACGGGCGGACGGGAAGTGGGGTGATGGCGGAAGTGGATGCTGAGTTTGAATCCAGTAGCGCTTTGAGCAAATTTGGTGAAGACGAATGTTCTGCATGGACAACAGTAGTATCAACAACTAGAACAAAAAATAAAATTTTCAAAAATTGCAGTGGATAATACGTGTGAATGATAATGAATCTCCTCTTATTGGGATAAGTTTGTTGAGTAAGGATGCATATGTGGGAAACCCATTTGAGGGGTCGAAGATTGTGAAGCAAGGGCTTGGAAAAGTggagtctgtcagagtgaccaggagTGGTCTTATTAATTGTATTTCTGAAGAAGAGGGGAAGATTGCAGTGGGCCTCAAGAGAATCCAGACAACAGAAGTGTTGTGTTTTGAATTTGAGTAGAGCACTTGTCAAAGGAGTCATCTCAGGGACGATGAAGATCATTCCTG
>TU779810
GAGGACCCTGCTGGCCAGGAGGGTGGAGATCCCTAAAGAGCTGTGTAACGAGCATGTGAGTGAGCCGGGGGACAGCTGGAGAGCGTACCTGATGGCCCAGGACAGATGTGAGGAGTACTTCATGGAAACCGCCCCTGAGGACCAAGTGGAGCAGACAGACACTGAGGAGTATTATGACTATGATTCGTAGATGGAGAAAATAAATGTAGCAGGGGAATTTCATGTTTAGCTGAAC

Function

NR:

description
nephrocan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611932.2 False 3571 mRNA 0.43 3 21401943 21406071
TU779810 True 235 lncRNA 0.52 1 21403040 21403274

Neighbor

gene id symbol gene type direction distance location
LOC110529588 ngbr coding downstream 833 21392338 ~ 21401110 (-)
LOC110529587 LOC106571386 coding downstream 16340 21247152 ~ 21385603 (-)
si:dkeyp-114g9.1 fbos coding downstream 160793 21231292 ~ 21241150 (-)
LOC110529586 NA coding downstream 204745 21187530 ~ 21197198 (-)
LOC118965500 NA coding downstream 749399 20650227 ~ 20652544 (-)
LOC110529592 LOC106571389 coding upstream 19548 21425619 ~ 21469294 (-)
LOC110529593 LOC106571390 coding upstream 93394 21499465 ~ 21504647 (-)
LOC110529205 LOC106571539 coding upstream 133811 21539882 ~ 21545761 (-)
trnal-cag-4 NA coding upstream 147987 21554058 ~ 21554140 (-)
afdna LOC106571391 coding upstream 152887 21558958 ~ 21688064 (-)
G684792 NA non-coding downstream 13894 21387816 ~ 21388049 (-)
G684791 NA non-coding downstream 14427 21387130 ~ 21387516 (-)
G684789 NA non-coding downstream 17657 21383918 ~ 21384286 (-)
G684690 NA non-coding downstream 110038 21287752 ~ 21291905 (-)
G684714 NA non-coding downstream 125242 21276176 ~ 21276701 (-)
G684767 NA non-coding upstream 15723 21421794 ~ 21424539 (-)
G684837 NA non-coding upstream 65544 21471615 ~ 21471826 (-)
G684863 NA non-coding upstream 85219 21491290 ~ 21491572 (-)
G684864 NA non-coding upstream 85638 21491709 ~ 21491926 (-)
G685004 NA non-coding upstream 114052 21520123 ~ 21520354 (-)
G681659 NA other downstream 2609806 18791230 ~ 18792137 (-)
G679471 NA other downstream 4287415 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 4771684 16625090 ~ 16630259 (-)
G679087 NA other downstream 4968929 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 6885415 14508329 ~ 14516528 (-)
G684844 NA other upstream 72695 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 514356 21920427 ~ 21926307 (-)
G685953 NA other upstream 752959 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 2210836 23614938 ~ 23659111 (-)
G687890 NA other upstream 2229238 23635309 ~ 23637408 (-)

Expression


Co-expression Network