LOC110529593 (LOC106571390)


Basic Information

Item Value
gene id LOC110529593
gene name LOC106571390
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21499465 ~ 21504647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611936.2
TGCAGGCTCGTCCAGAGACACTTGAAAACCGCTGGCTGTGTAACGTCTTTACTTTCCCCCGCCACGCGTTCCCTGTCGCACTGACGTAGCGTTAAGAAGGCAGGACGCGCAGCGCGATTGGGATAGAAATGCAGCTCTCCAACGtcccaggttaatctctctccgTTTAGGAAATTACATCCCTACAATCTGCTTATTCTGTCAAGTTATTAACCGTGAGAATTCGCTTTTTTCGCCATGAGCTGCTTGGATGTTATGTATCAAGTGTATGGTCCACCACCTCAGCCTTATTTTTCCGCAGCGTATAGCCCTTATCATCACCAGAAATTGGCATTTTATTCCAAAATGCAAGAAGCGCAAGAGAGCGTCAGCGGGGGCAGCTCGTTCTCGAACCTCGCGGGTCCGACGATAAAGGAGGAGGACTGCGCGCGCGAGAAAGATCACCCTCCGGAGGCCGAGTACCTGAACTCGCGGTGCGTGCTCTTCACCTACTTCCAGGGGGACATCAGCTCAGTGGTGGACGAGCACTTCAGCCGGGCCCTCAACCAGCCCACCAGCTACGTCCCCGGGTCGGTCAGCAACAAGTCCGCACGAGATGGACCATTCCCGATGAGCCAGAGGAGTTTCCCTCCGTCCTTCTGGAACAGTGCGTACCAGCCCTCCTCCATGAGCAGTGCCTTAGGAGCCTCCCACTCAGAGATACCCTTCACTGGGGACCCTTACTCCTCTGCCTCCCTACATAGTCACCTCCACCATGCTACCCCAGAGCCCTGgcaccactcacaccaccaccaccaccaccacccctactcaCTTGGCGGGGCCATCGGCACCCAGGGCTCCACCTACCCTCGACCCAGCATGCACGAGGTGTATGGCACGCACTTTGACCCCCGCTACAGTTCTCTGCTGGTGCCCTCCGTCCGGCCGCACCGGCTCCCTCCATCCACTGTCCAAGGGCCGAGCGCCTCAACATGTGACATTGGGAAGAGTGAGCCAACCAGCTCGGCCTGGACCGGTACCTTCACCGGGGCAGGGGCAGACATCAGCCAGAGCATCGGCCTCAATGTAGATGCAGgtCTGCAGGCCCAGGATAAGAGCAAGGACTTGTACTGGTTTTAAAGCTCTGCTGCCCTCCAGGCCCAAGCTGGCCTCTGTGTTTCTCTGCACTGTGTGATATTGACAGACATTTTCTGTAACAGATTCTAATCTCACTTGCAGCTCGACGCTACACCCTCTGTGGCGGAAACATCCTCAGCTGAAATTACGCCATTGTGGATACCATCTGCTGGAAATGCAGTGCACAAGGGAGAGAATCTAAAACTGAGTCTCTCCTACTTAAGAGAAAGGAGGGCAGGACTTGCTGGACAGCATGCCAGAAATACTAAGTGGTGTGACTGACAACTTTTATCTGGCCAAGACTGAACGCATTCAACTCCTCCAAAGAGGACAGTTgttgaaaaataaaacaaatatggtGAATGTGTGAAACTGGAACATCAAAAATGAGATTTGACAAGAGCATAGTCAGAGACTGGACAAACACTATTTGCCATTGTTATTTTTCTATCCGTGAAAggagaggagcaagagagaggagcaTTCTCTAACATGACTGAAGTGAGCACTGGCTATTTGAAGCCACTTGACTCTATCTATATTGCTCCCCAGCAGCTGTCAACGACAACTGTTTCAGAACTCAACGGACACACACAATGGTAGTGTCACTGCACAGTATTTGACGGGGGCTCCGGACTTCATAAAAGGAGCATTTTGTCAAATCTGGACCCCGACCCACAGGGAACAACTGGTTTGACTGGTGATTTTGAGGGGGAAGGGTGGACAGGTGGTAGCAGAAGTGGACACACACAACTGTgctatgtatgtatgtctgtgtgcgATCTATGGGCAGCTCTATACatgtgtaggatcttaatttgatcaccctgttgcaggataactttttTCTAACTTGTAGCGTATTTgaagtttaaaaaggcttctgaaatttgaaatttccactttgaaatttcagagttgattttcccttatgaaaaatgtatcaatccctacactaatgtccattaattataatccacataataattcacatttcgtgttgctgcaggattattttcctgcttcaCCAattctggctcaaattaagatcctacatctgtgatAATGTTGTATTTAAGATTTGGATCTTTATAAACTTATTCCTCATTGTTTTTTCAGTCATCCCAGGTATATTGCAAAGTCAAAAGATTACCCATTGAATATTGTATTgtgaatatattaatatattgccttttaaagtattttttcttGATACAGTTCGGATGTAATGTCAATGTGTTGCCTGTAACTATAAAGCAACGGCACAATGTGATTAAAACGCAACTATAGCCTCTGATTGTTTAGGCGAACATGTACAGGGCAGATATGGGTGATCTTTAGAAAATACAATTTCATAGACAGTCCGATTGAAAACTATTATGTTTGATGATGTGTCAGTCTATTATTCTGGTTAATTTCTTCAATGATGTTATATTGTACAACATC
>XM_021611937.2
GATGCAGGCTCGTCCAGAGACACTTGAAAACCGCTGGCTGTGTAACGTCTTTACTTTCCCCCGCCACGCGTTCCCTGTCGCACTGACGTAGCGTTAAGAAGGCAGGACGCGCAGCGCGATTGGGATAGAAATGCAGCTCTCCAACGtcccaggttaatctctctccgTTTAGGAAATTACATCCCTACAATCTGCTTATTCTGTCAAGTTATTAACCGTGAGAATTCGCTTTTTTCGCCATGAGCTGCTTGGATGTTATGTATCAAGTGTATGGTCCACCACCTCAGCCTTATTTTTCCGCAGCGTATAGCCCTTATCATCACCAGAAATTGGCATTTTATTCCAAAATGCAAGAAGCGCAAGAGAGCGTCAGCGGGGGCAGCTCGTTCTCGAACCTCGCGGGTCCGACGATAAAGGAGGAGGACTGCGCGCGCGAGAAAGATCACCCTCCGGAGGCCGAGTACCTGAACTCGCGGTGCGTGCTCTTCACCTACTTCCAGGGGGACATCAGCTCAGTGGTGGACGAGCACTTCAGCCGGGCCCTCAACCAGCCCACCAGCTACGTCCCCGGGTCGGTCAGCAACAAGTCCGCACGAGATGGACCATTCCCGATGAGCCAGAGGAGTTTCCCTCCGTCCTTCTGGAACAGTGCGTACCAGCCCTCCTCCATGAGCAGTGCCTTAGGAGCCTCCCACTCAGAGATACCCTTCACTGGGGACCCTTACTCCTCTGCCTCCCTACATAGTCACCTCCACCATGCTACCCCAGAGCCCTGgcaccactcacaccaccaccaccaccaccacccctactcaCTTGGCGGGGCCATCGGCACCCAGGGCTCCACCTACCCTCGACCCAGCATGCACGAGGTGTATGGCACGCACTTTGACCCCCGCTACAGTTCTCTGCTGGTGCCCTCCGTCCGGCCGCACCGGCTCCCTCCATCCACTGTCCAAGGGCCGAGCGCCTCAACATGTGACATTGGGAAGAGTGAGCCAACCAGCTCGGCCTGGACCGGTACCTTCACCGGGGCAGGGGCAGACATCAGCCAGAGCATCGGCCTCAATGTAGATGCAGCTCGACGCTACACCCTCTGTGGCGGAAACATCCTCAGCTGAAATTACGCCATTGTGGATACCATCTGCTGGAAATGCAGTGCACAAGGGAGAGAATCTAAAACTGAGTCTCTCCTACTTAAGAGAAAGGAGGGCAGGACTTGCTGGACAGCATGCCAGAAATACTAAGTGGTGTGACTGACAACTTTTATCTGGCCAAGACTGAACGCATTCAACTCCTCCAAAGAGGACAGTTgttgaaaaataaaacaaatatggtGAATGTGTGAAACTGGAACATCAAAAATGAGATTTGACAAGAGCATAGTCAGAGACTGGACAAACACTATTTGCCATTGTTATTTTTCTATCCGTGAAAggagaggagcaagagagaggagcaTTCTCTAACATGACTGAAGTGAGCACTGGCTATTTGAAGCCACTTGACTCTATCTATATTGCTCCCCAGCAGCTGTCAACGACAACTGTTTCAGAACTCAACGGACACACACAATGGTAGTGTCACTGCACAGTATTTGACGGGGGCTCCGGACTTCATAAAAGGAGCATTTTGTCAAATCTGGACCCCGACCCACAGGGAACAACTGGTTTGACTGGTGATTTTGAGGGGGAAGGGTGGACAGGTGGTAGCAGAAGTGGACACACACAACTGTgctatgtatgtatgtctgtgtgcgATCTATGGGCAGCTCTATACatgtgtaggatcttaatttgatcaccctgttgcaggataactttttTCTAACTTGTAGCGTATTTgaagtttaaaaaggcttctgaaatttgaaatttccactttgaaatttcagagttgattttcccttatgaaaaatgtatcaatccctacactaatgtccattaattataatccacataataattcacatttcgtgttgctgcaggattattttcctgcttcaCCAattctggctcaaattaagatcctacatctgtgatAATGTTGTATTTAAGATTTGGATCTTTATAAACTTATTCCTCATTGTTTTTTCAGTCATCCCAGGTATATTGCAAAGTCAAAAGATTACCCATTGAATATTGTATTgtgaatatattaatatattgccttttaaagtattttttcttGATACAGTTCGGATGTAATGTCAATGTGTTGCCTGTAACTATAAAGCAACGGCACAATGTGATTAAAACGCAACTATAGCCTCTGATTGTTTAGGCGAACATGTACAGGGCAGATATGGGTGATCTTTAGAAAATACAATTTCATAGACAGTCCGATTGAAAACTATTATGTTTGATGATGTGTCAGTCTATTATTCTGGTTAATTTCTTCAATGATGTTATATTGTACAACATC

Function

NR:

description
transcription cofactor vestigial-like protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611936.2 False 2565 mRNA 0.47 4 21499465 21504645
XM_021611937.2 True 2424 mRNA 0.47 4 21499465 21504647

Neighbor

gene id symbol gene type direction distance location
LOC110529592 LOC106571389 coding downstream 30171 21425619 ~ 21469294 (-)
LOC110529589 LOC106571387 coding downstream 93394 21401943 ~ 21406071 (-)
LOC110529588 ngbr coding downstream 98355 21392338 ~ 21401110 (-)
LOC110529587 LOC106571386 coding downstream 113862 21247152 ~ 21385603 (-)
si:dkeyp-114g9.1 fbos coding downstream 258315 21231292 ~ 21241150 (-)
LOC110529205 LOC106571539 coding upstream 35235 21539882 ~ 21545761 (-)
trnal-cag-4 NA coding upstream 49411 21554058 ~ 21554140 (-)
afdna LOC106571391 coding upstream 54311 21558958 ~ 21688064 (-)
LOC110529598 s22a2 coding upstream 312065 21816712 ~ 21822446 (-)
LOC110529599 LOC106571395 coding upstream 327881 21832528 ~ 21872462 (-)
G684864 NA non-coding downstream 7539 21491709 ~ 21491926 (-)
G684863 NA non-coding downstream 7893 21491290 ~ 21491572 (-)
G684837 NA non-coding downstream 27639 21471615 ~ 21471826 (-)
G684767 NA non-coding downstream 74926 21421794 ~ 21424539 (-)
G685004 NA non-coding upstream 15476 21520123 ~ 21520354 (-)
G685006 NA non-coding upstream 17098 21521745 ~ 21522034 (-)
G685013 NA non-coding upstream 25514 21530161 ~ 21530509 (-)
G685017 NA non-coding upstream 31410 21536057 ~ 21536342 (-)
G685018 NA non-coding upstream 31933 21536580 ~ 21536886 (-)
G684844 NA other downstream 20262 21478766 ~ 21479203 (-)
G681659 NA other downstream 2707328 18791230 ~ 18792137 (-)
G679471 NA other downstream 4384937 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 4869206 16625090 ~ 16630259 (-)
G679087 NA other downstream 5066451 16432621 ~ 16433014 (-)
LOC110529207 sprtn other upstream 415780 21920427 ~ 21926307 (-)
G685953 NA other upstream 654383 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 2112260 23614938 ~ 23659111 (-)
G687890 NA other upstream 2130662 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 2250185 23754832 ~ 23756910 (-)

Expression


Co-expression Network