LOC110529205 (LOC106571539)


Basic Information

Item Value
gene id LOC110529205
gene name LOC106571539
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21539882 ~ 21545761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611330.2
ATGACTGTTTTCTCCCCCACATCACTGTCAGAAGCAGAGGACACTAATGAAACCCCATCTTCTGAGGAGGACCAGGATTTTGTTGAGTATTCCAAAGATTTGGCTTTCAAACAGACGACCCCGAGGAAAAGCATCACTCAGATCATAAAAGACAAGAAGAAACAGACTCAGCTCACCCTTCAATGGCTGGAGGAAAACTATATTGTTTGTGAAGGGGTTTGTCTGCCACGTTGCATCCTGTACGCTCACTACCTAGACTTCTGTAGGAAGGAGAAACTGGATCCAGCCTGTGCTGCTACATTTGGCAAGACAATTCGTCAGAAATTTCCACTTCTTACAACAAGAAGACTTGGGACCCGAGGTCATTCAAAATATCATTATTACGGCATTGGCATCAAAGAGAGCAGTGCCTATTATCACTTGGTGTACTCAGGAAAAGGCTTGACGAGATTTTCAGGGAGCAAACTCAAGAATGAGGGAGGATATACTCGGAAATACTCCCTCAGCTCCAAAACAGGAACTTTGCTCCCAGAATTCCCAAGTGTACAGCATCTAGTGCTTCAAGGTTCTGTCTCTAAAGAGAAGGTGGACACGCTCATCATGATGTACAAAACACATTGTCAGTGCATCCTGGACAATGCCATCAATGTCAACTTTGAAGAGATACAGAATTTTCTGCTGCATTTCTGGCAAGGAATGCCCGACCATCTTTTACCACTGCTGGATAACTCCATAATCGTGGACatcttctgtgtgtgtgactctatACTATATAAGGTTCTGACAGATGTCCTGATCCCTGCTACGATGCAGGAGATGCCTGAAAGTCTCCTGGCAGACATCCGTAACTTGGCCAAGCACTGGGAAGACTGGATGGTGTCTTCTCTGGAAAACCTCCCAGAATGCCTCTCAGAGAAGAAGCTCCCGATCGCACGCAGATTTGTGTCCTCTCTAAAACGTCAGACCTCCTTCTTACACCTTGCCCAGATCGCAAGACCAGCTCTTTTTGACCAGAATGTGGTGAACTCCATGGTGGTGGATATAGATCAAGTGGATTTGAACAGCATAGGGTCACAAGCCCTTTTCACCATCTCAAGTGGTGACCAAGACTCTGACCTCTACTCTGAATATGACTCTATAACAGCGTTCCAAGAGCTGAAAGACCTACTGAAGAAGAATGCCACTGTGGAATCCTTTATCGAGTGGCTGGACACTGTTGTGGAGCAGAAGGTCATTAAGCCTGGGAAGCAGAACGGACGGTCCATAAAGAAGCGAGCTCAGGACTTCCTCCTCAAGTGGAGTTTCTTTGGAGCACGTGTTATGCACAACCTCACGTTGAACAACGCCACAAGTTTTGGTTCGTTCCACCTAATCCGCATGCTGCTGGATGAGTATATCCTTCTGGCTATTGAGACACAATTCAACAATGACAAAGAACAAGACCTCCAGAATATCCTAGATAAATACATGAGAAATGCAGATGGCAGCAAGGCGGCATTCACTGCCTCCCCTAGCTCCTGTTTCCTGGCCAACCGTAACAAGCCCAGCGCGGTGTCCAGTGATCTGTCTGTGAAGAACGAGTCCCTCTCAGAACACACATACATGACCCTGTCAGCTAATCAGCAGGCAAACATGACTGTCTACCAAGGCTCTGAAACAGATGGATTCTCTCTGTCAGGACAAATGGACTTTTCCCAGAACAGTGGCCCTCTGATGacccctcccatctccccagCCATGGTGAACAGGGGCAGTGTCATCAACCAGGGCCCCATGGCCGTCATACCCCAGATCGCCTGCACCACCATCCAGCCCCACATCTCCTGCCAAGCCTTCCCAGACACCATGTACCAGAGCCTGCCTTCCAGTAGCCCCAGCTACTACCCAACCACTTCCAACTACCAGGCTGTGTTCAGGCCCCAGACACACGCTCAGGCCCCTGCCTACCACACCCGCTCCGATAGCAGCCACTACCCGTCCTTCAGTGAGCAGCACCTGGCCAAAGACTACTTCAACAGCAGCTGTGCTGTGTCCCCCTACAGCTCCAGACCCACCTCCAATTACAGCACAGTCCCTGATCCTGGGATGGAGACTCAGGGGGTTCAGCTACTGGACTCTGGAGGATACAACTTTGTCATGAGTGGGTTAAACAGTAGTGGCTGTCAGGAGTCTGCCTACTCAACAGCAGGACACAGGTACTATGGAAACAGTGGCTACCTGGATAGCCAGAGGCTGGGTTCCATGATAGACCAGCATGTGTCAGTTATCAGCAGTGTGAGCAGTATTCGTTCCGTCCCAACATACGCTGATGTACACGACCCCCTCAACATCCTGGATGACACAGGCAGAAAGCCGGCAGGCCCTTACTACCCTGAGTCTGACTCACTGGGCACACCTGGAGctcctcccctcccctcctcgatCTCCGCACCCTGCATGTATGGAGGTCCTGCCCAGTTCCACTCCCAGGATGCACCGCTTCCTCACCAGGGATCATCTGAGGTACGTGACATGGTGTCATCGCTGCCACCCATCAACACTGTGTTTATGGGGTCTAGTGGAGGAGGACCGTGAGCTGTGACAGAACCTccaaccaccaccactcctcaagGTCCTCTGTTCCCTCTCACACCACTCCTTAAGGTCCTCCGTTCCCTCTCACACCGCTCCTCAA
>TU780055
GTCAGAAATAACTGAGGGTTGTACCATAAATGTGTATTCTGCTTATAGAGGAACCTCTCTGTTTTTCAGGGTACTATGGAAACAGTGGCTACCTGGATAGCCAGAGGCTGGGTTCCATGATAGACCAGCATGTGTCAGTTATCAGCAGTGTGAGCAGTATTCGTTCCGTCCCAACATACGCTGATGTACACGACCCCCTCAACATCCTGGATGACAC
>TU780057
GTCATAATACACATCAATCTGTAATGTTTGTTATGGGAAGTGATCAGCCAGGTCTGAGGCTACTTACTCAACTATGGAATTGAAATTGCAATGACATTCTGGAATTGAATCTCAGTCTGATTTATTATTTGATTCTAGATTTTCAGGGAGCAAACTCAAGAATGAGGTAAGATTGTTATGAATGAACAGTCTCTAGCAAATATATAACAGACGAATAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611330.2 False 2674 mRNA 0.50 18 21539882 21545761
TU780055 False 217 lncRNA 0.47 1 21540384 21540600
TU780057 True 221 lncRNA 0.34 1 21544691 21544911

Neighbor

gene id symbol gene type direction distance location
LOC110529593 LOC106571390 coding downstream 35235 21499465 ~ 21504647 (-)
LOC110529592 LOC106571389 coding downstream 70588 21425619 ~ 21469294 (-)
LOC110529589 LOC106571387 coding downstream 133811 21401943 ~ 21406071 (-)
LOC110529588 ngbr coding downstream 138772 21392338 ~ 21401110 (-)
LOC110529587 LOC106571386 coding downstream 154279 21247152 ~ 21385603 (-)
trnal-cag-4 NA coding upstream 8297 21554058 ~ 21554140 (-)
afdna LOC106571391 coding upstream 13197 21558958 ~ 21688064 (-)
LOC110529598 s22a2 coding upstream 270951 21816712 ~ 21822446 (-)
LOC110529599 LOC106571395 coding upstream 286767 21832528 ~ 21872462 (-)
ttc13 LOC106571397 coding upstream 342212 21887973 ~ 21905043 (-)
G685021 NA non-coding downstream 1567 21538116 ~ 21538315 (-)
G685020 NA non-coding downstream 1819 21537726 ~ 21538063 (-)
G685018 NA non-coding downstream 2996 21536580 ~ 21536886 (-)
G685017 NA non-coding downstream 3540 21536057 ~ 21536342 (-)
G685013 NA non-coding downstream 9373 21530161 ~ 21530509 (-)
G685049 NA non-coding upstream 79466 21625227 ~ 21625697 (-)
G685087 NA non-coding upstream 152904 21698665 ~ 21698916 (-)
G685098 NA non-coding upstream 161147 21706908 ~ 21707110 (-)
G685696 NA non-coding upstream 169526 21715287 ~ 21722130 (-)
G685705 NA non-coding upstream 181727 21727488 ~ 21727799 (-)
G684844 NA other downstream 60679 21478766 ~ 21479203 (-)
G681659 NA other downstream 2747745 18791230 ~ 18792137 (-)
G679471 NA other downstream 4425354 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 4909623 16625090 ~ 16630259 (-)
G679087 NA other downstream 5106868 16432621 ~ 16433014 (-)
LOC110529207 sprtn other upstream 374666 21920427 ~ 21926307 (-)
G685953 NA other upstream 613269 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 2071146 23614938 ~ 23659111 (-)
G687890 NA other upstream 2089548 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 2209071 23754832 ~ 23756910 (-)

Expression


Co-expression Network