LOC110529595 (LOC106571393)


Basic Information

Item Value
gene id LOC110529595
gene name LOC106571393
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21772063 ~ 21774545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611947.2
ATGTGCCTGTTTAACTTGCTCTATTGATTATAATAAAAAACTACGTTTTCATGAAATCTCCTGCCTTTTCAAGAAGAAGATTTAATGTGAGAAGCCCTCGGGCCTCTTCTTCACAATGCAATGTTTTCGACTATGTACAGAATCTCTGGTGGGATTTAGCTGCTTATTTATTTGACCCGTGGTGACTAGTCTACTCAGGCATGGGAGGTGCTTAACCGACAAGTCTGAACTGAGTGCTATGCTGTCTGCGTGCTGGGGGGAATTACTTCCAGACTGAAATGCAGTCCTTCAGTTTCACCAAGTCTGCATACGGACTAGGACCTTGCTTGACTACCATCAAACAGACCTGATTTTCATGTAAAGTTAGGAAATATTAGGAGCTGAGTACTTTCGAGGACTGTTTGTCTTTCTCATTAAGGATTCGGACAGAGTCTGACTGTACAGAGGAAAGCTTTCGATGATGAAAACAATGGAGAACGGCCATCCAAGTGATAACTGCACAGCAGAGAATCTGCCACTGTACAAATTTTACGCCTCTGTGATGATCATGGAATTCACCCTGGGTCTGCCGCTCAACCTCTCAGTGCTTTATCTATTCATCTTCAAGCTGAAGTTCTGGAAATCTAAAACCAACAACATTTTCCTGTTCAATCTCGTCTTGGCTGACGTTCTTCTGCTTATATGTTTGCCAGTAAAGGCATATCATTTTCTTAATGGGAATCGGCGGAGTACAGAGGGAGGGACCTGCAAAGCCATGCTCTTCATGCTGTTTCTGAACCGAGGTGCCAGTATCGCCTTCCTGACTGTGATTTCAGTTGATCGCTATTTCAATGTGGTTCATCCTGGGAAAAAGAACTTTGCCAAGGCTTTTAAAAGGTCTCCTCATATCTCTATCCTCATCTGGCTACTGCTGCTCCCCCTGACTATCCCCACCATGCTGAAGTCCTTTGAGTGCTGTAATAGTTATGGGCGTGAAGATGACACTCTAGTCGAGGACGTCACTGACACTCTGAGAGAGGTTGTGTTTTTCACCCAGATTCTCATCCCTTTCTTTGTGTTGGTCTACTGCACGGTCCGCATTGTTAACAGACTAAAAAAGAAGACCGTAGGGGATAGTACCAAGCTGCGTCGAGCAGTGTTTCTGGTCACCTCAGTAATGCTGGTCTTTTCTTTCTGTTTCCTGCCTTGTACCATAGCTAGAATGGTTCTGTTGATTGTGAGAGTTGAGAATTTACCCGGAGCAGAAGCTATAGTTGTTCAAGTCTTTGACGGTCTCATGGTTTTGTCTTACATGGATTGTTTAGTGGACCCAATTGTGTACTGCTTAAGCAGCACTAAGTTCAAAAGCCTCTACCTGACAACGTATTGCCGCTGTCTACTGAGCAAAAATGCAGAAATAGCTGAGAGCACAATCTCAATAGGAAACAACTCAAGCCCAAAACGCAACAACAATATATTGTTGCATAGTAGGTAAAAAGAGGACATGAAAATGACTGTTTTATTACTGACTTCATGACTGTTCTCATGGTAAGACACTCATGTTAGTTTGCCAAACCAGACGTGTTTATGTTACCATCAGCATGTTAAACAGCTCATAATGACTGTGTTGTTACTAATTGTCTGGGTCAAATAACAAAGATGTGTCGTTGCTGTTGTTTTAATGGCTGTCTCTCTGGCCATTCGTCCATTTATCTTATTATgtcaggggttgaatacttattgactcaagacatttcaggttaacactttacttgacacccatcGTCATAACACGTAATGGCACAGTCTTAACCATGTCATAAACTGTCCTAATAggttcataacactgtcatgaccaatatatttacacctgttgtcacatatattgcgttattttatggctggttatgaaacCTATATGAGGGTGTCAAAATGcacaaaacctaccacggtaAAAAAAAGGGCACCCACAAGACTCATTGAGCAATTATTACAAGAGCAGAAGAAAACTGACCAATCTGATGAGTATTTGACAAAACTATTTTGAACTGGAATAAATGCTGCCCTTATTAACAATGACCAACCCAACCAGTCAAAATAGATTGTAAGACATTCTGTAGCCTACCATTACTATAACCAACCCAAATCCATTTGTTGCCATTATCATGTATCCAAGTGGTTTTCAAACTTTTTGACCTGCAATCTCCAAAACAGAGTGGTAGAAAACAGGAAACCCTGTTCACGCAAATGCGCATGTGCACACGGTGATGCATTTTTAAAACTCAAGATGTGCTACAGAAATAAACTACGTTTTACACCTGCATTTGGAGCTGAAAGACTTTCATGTTAGTGGCCAATATCAACTATGGATATATCTGTATATAGCTATGTACAtttattgttatgtacatttcttgtaattcttttgattgatttgatttaaaaaaaaacttttgtttatttagtaaatattttattaactatttcttgaactgcattgttgg

Function

NR:

description
12-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611947.2 True 2483 mRNA 0.40 1 21772063 21774545

Neighbor

gene id symbol gene type direction distance location
LOC110531076 LOC106571392 coding upstream 49881 21713160 ~ 21722182 (+)
LOC110529590 LOC106571388 coding upstream 349206 21406192 ~ 21424564 (+)
LOC110529585 LOC106571383 coding upstream 541953 21143069 ~ 21230110 (+)
mcm9 LOC106571380 coding upstream 635238 21117379 ~ 21136825 (+)
LOC110529583 LOC106571378 coding upstream 655766 21010321 ~ 21116297 (+)
LOC110529596 LOC106571393 coding downstream 5325 21779870 ~ 21782714 (+)
LOC110529597 LOC106571394 coding downstream 14671 21789216 ~ 21816690 (+)
LOC110529600 LOC106571396 coding downstream 99854 21874399 ~ 21876744 (+)
LOC110529601 LOC106571541 coding downstream 102349 21876894 ~ 21879588 (+)
LOC110529604 NA coding downstream 130466 21905011 ~ 21912494 (+)
G685116 NA non-coding upstream 23029 21748512 ~ 21749034 (+)
G685112 NA non-coding upstream 41055 21730766 ~ 21731008 (+)
G685084 NA non-coding upstream 76961 21694872 ~ 21695102 (+)
G685078 NA non-coding upstream 80471 21691284 ~ 21691592 (+)
G684926 NA non-coding upstream 188670 21582999 ~ 21583393 (+)
G685160 NA non-coding downstream 48248 21822793 ~ 21823017 (+)
G685162 NA non-coding downstream 49017 21823562 ~ 21823767 (+)
G685163 NA non-coding downstream 50011 21824556 ~ 21824773 (+)
G685164 NA non-coding downstream 50424 21824969 ~ 21825285 (+)
G685183 LOC106571395 non-coding downstream 89515 21864060 ~ 21864651 (+)
G684314 NA other upstream 693192 21077070 ~ 21078871 (+)
G683845 NA other upstream 1064692 20707058 ~ 20707371 (+)
G683757 LOC106571373 other upstream 1139164 20626950 ~ 20632899 (+)
G683669 NA other upstream 1208629 20562875 ~ 20563434 (+)
G685215 NA other downstream 150572 21925117 ~ 21926356 (+)
G685311 NA other downstream 309329 22083874 ~ 22084224 (+)
LOC110529616 LOC106586086 other downstream 648513 22419790 ~ 22433035 (+)
G685469 NA other downstream 672226 22446771 ~ 22448073 (+)
G685551 NA other downstream 705778 22480323 ~ 22482139 (+)

Expression


Co-expression Network