LOC110529598 (s22a2)


Basic Information

Item Value
gene id LOC110529598
gene name s22a2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21816712 ~ 21822446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611951.2
GTTGTCTCTAATACAATAAGGATTGTTTGTATTGGTGTTTGCAAAGTTTAATGTTTGATGTTCACTGTATTTATATTGAATATCCTGTATGTTGACTatgttgactgtgtgtctgtattcTGTTTGTACATTGTCTGTTGCTGGCAGCACCTATTCACTAAGTCAAATTCTGGGTATGTGTATAATTGGGGAATAAAGTGATTCTGAAGTGATTGGGAAGATATTTTGAATTCTTTCTCCTCTACCATGTGTGCATCGGTTACAGTAAGATCTCCCTCTCAGATTATGTGCTTTGTGCTTATTTTTTTATCACGTGTTTGAAGTAATTTACTGAAATAGTTTGTTGTTGCCCTAGCTTTGTTATTATAAGTGTTTGACAGTTACTTACCTGCAATTGTTGAGAAGTGGATGGATTGTGTTGTTTCTGTGAATTGACAATATGCCGTGCGAGCAGAAAATATGTGAGAGAACATGTCTATGGTTATACAACCCTACTCCCGCAAGCACACAAACTTGTAATAAATGTGACATTAAATTACAATTATAATTATGTGAGTATCATGCAGGAgtttaacaaaaaaaaatccacatGGTCTAATTTGCATAATACGCATAATACACAGTGGAATTGCACTCTGTACAGCCAGCGCTATTAAAAAGTAACATGCTGCCTCTGTTGGCGAGTCAACACTGTAGGTCAAGGGTCAACCTCACTATTGGACTTTTGATCTGCTCTTTGCTTTTAAAACCCCTGCACAAATCCCACTGCAGTCTCACATATAGTATCTCTGCTTCTGACACCCAACTCTGCAACCATGACCACATTCGATGAAATCCTAGAGGAGGCAGGGAATTTTGGTCGTTGCCAAAAGCGCATTTTCGCTCTGCTATGTATGGTGTCGTTGCCTTTTTCTGGGGTCTATGTGGGCATTGTGTTCCAGGGGTTCACCCCAGAGCATTGGTGCCGGGACTCAGTGGTGAGTCAGATCCGGCAGAGCTGTGGCTGGAACCTGATGGATGCCAGAAAGATCACCGTCCCTCTGGTCAACACCTCAGGAGTGCTGGTCCACAGTCAGTGTGAGCAGTATGACCTGGACTGGAACAATACAGGTCTGACCTGTGACAACCCAGAGTCTGACCTCACCGACGCCCATCGCAGCAAAGCTCCCATGACCTCCTGCAAGGAAGGCTGGGAGTATGACTACGAAGGCAGGCAGTCCTTTGTGACCGAGTTTGACTTGGTATGTAATGATGCCTGGGTGGTGGATATGTACCAGGCTACACTGAATGTGGGCTTCCTTGTTGGAAGCATAACTTTTGGATACCTGGCTGACAGGTTCGGCAGAAAAAGGAGCTTCTTGATGTCCAACCTCTTGAATGGGGTTGCTGGAATACTTGTAGCAGTGGCTCCAAACTACATATCCATGCTTGTATTTCGCACAATCTTTGGCTTTGCTGTTAAAGGAGGCTGGATGTCTGTATATGTGCTTATCACCGAGCTAGTGGGAGTTGAGTACAGGAGGATGGTGGGCGTGCTTTTACAGATGTTCTTCAGTGTAGGCATTCTCATTTTGACCCTCATTGCCTACCTCATCACTGACTGGCGCTGGCTGCAGGTGACCTTCGCTGTTCCTTACTTCATATTTCTAACCTACTTCTGGTTGATCCCAGAGTCTCCAAGATGGCTTCTTTCTCAGAACAACTCAACCAAAGCGAAGGAGATCATTGAGGCAATAGCGAAGGAAAACAAGAAAACCCTCTACAAGAACATTGAGACGCTGAGAGACGACAATGCACAGACCTCAACTGCCTCGTTCCTGGATCTGGTCAGAACTCCAAACATGAGAAAACACACCTTCATCCTCATGTTCAACTGGTTCACTAGTGCTATTGTCTACCAGGGTCTTATCATGCGTGTGGGAATCGCAGGAGGAAACGTCTACATTGACTTCCTGATCTCTGGACTGGTAGAGTTCCCTGCTGCCTTCCTAATCCTCTTCACCATCGATCGTATTGGACGTCGTCTTCCCTTTGCCACGGCCAACATTGTAGCTGGAGTATCCTGCTTCATCACTGCTATGATCCCAGATAgtCACTTCTGGGTCAAAACAGTTGTGGCCTGCATTGGCCGGTTGGGCATCACCATGGCATTTGAGATGGTGGTGTTTGTGAACACTGAATTATACCCCACCTTTGTCAGGAACCTAGGTGTGTCAGTCTGCTCTACTCTGTGTGACATCGGAGGCATCGTGGCCCCGTTCCTGCTCTACAGACTGGCTACCATCTGGCTGGAGCTGCCACTCATCATATTTGGGGCGATAGCGTGCATAGCTGGAGGTTTAGTCTTGCTGTTGCCTGAGACCAGAGGTGTAAGACTTCCTGAGACCATCGATGACATTGAGTTCCCAAACAGACACAAAGAAAACCATCCGAAGAGTCAACAACTGACAAATCTCTTGCCCACTGACATGACGACCAACAAAGAAGCTACAATCGTCTGATCGATCTTGCTCCGCCTCTTCACAAGATTGACAGCATA

Function

NR:

description
solute carrier family 22 member 2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
K08199 SLC22A2, OCT2; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611951.2 True 2539 mRNA 0.46 11 21816712 21822446

Neighbor

gene id symbol gene type direction distance location
afdna LOC106571391 coding downstream 128648 21558958 ~ 21688064 (-)
trnal-cag-4 NA coding downstream 262572 21554058 ~ 21554140 (-)
LOC110529205 LOC106571539 coding downstream 270951 21539882 ~ 21545761 (-)
LOC110529593 LOC106571390 coding downstream 312065 21499465 ~ 21504647 (-)
LOC110529592 LOC106571389 coding downstream 347418 21425619 ~ 21469294 (-)
LOC110529599 LOC106571395 coding upstream 10082 21832528 ~ 21872462 (-)
ttc13 LOC106571397 coding upstream 65527 21887973 ~ 21905043 (-)
LOC110529605 LOC106571399 coding upstream 93070 21915516 ~ 21918789 (-)
LOC110529207 sprtn coding upstream 99127 21920427 ~ 21926307 (-)
c8h1orf131 cssa15h1orf131 coding upstream 135759 21958205 ~ 21961107 (-)
G685721 NA non-coding downstream 18690 21751001 ~ 21798022 (-)
G685740 LOC106571393 non-coding downstream 35422 21772241 ~ 21781290 (-)
G685707 NA non-coding downstream 87362 21728885 ~ 21729350 (-)
G685706 NA non-coding downstream 88446 21727931 ~ 21728266 (-)
G685705 NA non-coding downstream 88913 21727488 ~ 21727799 (-)
G685776 NA non-coding upstream 64015 21886461 ~ 21886735 (-)
G685784 NA non-coding upstream 90518 21912964 ~ 21913189 (-)
G685762 exoc8 non-coding upstream 104601 21927047 ~ 21929631 (-)
G685868 NA non-coding upstream 225312 22047758 ~ 22048399 (-)
G685895 NA non-coding upstream 260466 22082912 ~ 22083121 (-)
G684844 NA other downstream 337509 21478766 ~ 21479203 (-)
G681659 NA other downstream 3024575 18791230 ~ 18792137 (-)
G679471 NA other downstream 4702184 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 5186453 16625090 ~ 16630259 (-)
G679087 NA other downstream 5383698 16432621 ~ 16433014 (-)
G685953 NA other upstream 336584 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 1794461 23614938 ~ 23659111 (-)
G687890 NA other upstream 1812863 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1932386 23754832 ~ 23756910 (-)

Expression


Co-expression Network