LOC110529605 (LOC106571399)


Basic Information

Item Value
gene id LOC110529605
gene name LOC106571399
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21915516 ~ 21918789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611960.2
GTCACTGCGGGTAACGCCCAATCAGCCTCGAACTGTGTTAAAGGGACAGGAAGTGCGAGTTAGCCAGAGCTCGAAAGGAGAAGATTACTGTTGTCTGGTGTCAACTGTTACTGGTGTCAACGGCTGTTGCCTGTTGTTTGTCGGAGATGTGCTTTTCATTCCCGAATGTGGTGATTTATAACGACTAAAATTGAAAGTACTATATTTGTTTGAGTGAGAGGGAAAAAAAAGTTTAACGATGAACGGTAAATCTGCGAATGGCACAGCGGGCGGAACACTGGCCTCCATTGAGGGGCTACCCCCACTGCCAAAGAGCCTAAGCGGCTTGCTGAATTCAAGCGGCGGGtcttggagagagatggagaggatgtATGCAAAGAAAACCATGATCCAAGACGACCTTAGCCGTGGGCGAAACAATTCCGACAATCTGCTTGCAAATAAACCGGCCAATCTTGATGCGGCTTTAGCACTCCTCCGAAAAGAAATGGTGGGATTGCGTCAGCAGGATATGTCGTTGCTGTGTCAGCTCTGGTCCCTCCATGagtcaatccaagagtacaaagGCAGTTGCCAGGATCTCAGCGCCGGGCATGGGATAGAGAACGGCTACTTTGACGAAGATGATGAATACTACCAGGAGACCAGCACAACACCAACTGACCAACCGGAGGGAAGTGAGGCAACATCTCCCAAAAATGGGACAAGCAAGGATTCCTGGCTACAAGACTCTTTTCACATCACCATTTGAGTGACCCAAGAGCTGAGCTGTTTGCTCCTTAGCTTGACTCTACACGTTTGAGGCAATACGCTTTTTATAAAGAGCTGTGCCATGCATTGAGTTTTGCTGGCTTATAGTCCTTTTTCAGCAGACTTTTtttcatataaatatatacagaaaTTAATTATTTATTATAAATGTTTTTTCCCTTATTACTATGGACATTTAGTTTTCTATGATTGGGTTGTATGTACTTCCAAGCTCCTTGTCATCTTCACAATGTTTACAGGATTGAAATCCCAGACACTGGGACAGTCTTGATAAACAAAATGGATGGGATTCCTGCCCCTGCAATCAGGGGAGGATATCAACTTTTAGATGGCATGTAGTGGCAGCTGTGACTGGTTTGTGTTGCATAGGCTGGAGAAAAGTATAAAATGCTGGAAATTGCTTACTTCTGGAAGGGTTTAAAAAAACAGGGGTAAAGCATGTGCTTCTCAGAAGCCCTGTTTATGGTGTGCAGACGCCAGACTGTGCTTCCTTTCATAATGTGCTGTGGCTCCATACCTTTTCAGTTAATAGTTCAATGAGACTGGGAAGTCTGCATTGTTGAATTAAGTACAGTTGCTTCCATAAACCTTGTTTTCAATTAACTCAATACAGGGTACCCATTACGAAGTCAAAGTATGTTGACCCCACCAGGACATGCATTTAGTGCACGTATGGCAATGTTGACTAGTCTCCCATAGCCAACTGACCCCTATCTTGAGTTTCTATGCGCACTCAACATTTAATTGCATAGACTGTATCTAAATGATTTAAGCTAGAAATGCATTCTTTAACTTTGACAATTTTGTGTGTAAACTGGTCCACAATTCATGTGCTTCTGGTACGTAAACCAAAGAGTATATTTGATGCTCGTTTGCTGAAATGTATTGGGTTTTTAGGAATGATACTGTAAAATGCAATGCTCTTCCTGATGCATCTAGTCTGTTTACTCTCCGAACAATATATCAAGAATGTTTTATAATACAGGTGTTTGATCTGTTTATGTATGTTTTCTTCACTGATTTAATGCAATTGAACAATATACACATCAGAGGACGATTGGAGGTCATTAACAGCATGCTTTCAAAATGGGGAGTTGAAAGAATGTTCACGGTACCTTCTATGCCTCAATGTGAGTGATCATGTATTGAATTTTCTACCTCCAGCTTCACTGTAAATGTATATTACCGCCACCAGCCGCAAATTGAAAACCTGTATTTAAACAGAATACTTAATCTCCATTTAGTGCCTTTTTTGGTCTCAGACCTTGGTTATTGTTGTCTGTCCCTTCAACTCATAGCACTTTCCTCAACCTGGTCATGTCTTTTTGACAGTCTCATGGCAAACATGTTGTGCACCGCATACTGTAACTCCAGTTACTAGTTCAATTCCCACCTAAAAGGAAACCTTATGTTCACCAGTGTCAATAATCCAAATATGAAATGTACATGAGCATCCTGATTAGTTTCTTTTTCATGTGGCAATATCCAGATGGAAATTGTCTTGATTTCATCCAATCAGAAAGCTGTGTTCTTGTACCACAGTTCATCTCAAGTTGTTGCCTCTGAATCCAAATCTACAGACCTAAAGGAGTCAATATAGGCCTCAAGCCAAGAAAATTAAACATTGATATCAGTCTAGTGGCAAGGTCAAGGTAGATTAATCTGTCATCAAAGGAATAATATATGAATTTCATTTATGAATCTGTGgaggatttaaaaatatattgtgTTCCCTCAGATACAAAACTCAGTGTATTTTGTATCTATTCCTCATGTTTGTTATTTTTCAGCGAATGACCATACTACTGTTTTTGGAAGATTGTTATTATGCTCATGTGATAGCTATACTTATGGATTTAATAAAATGACTTGATACTCCGA

Function

NR:

description
protein FAM89A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611960.2 True 2652 mRNA 0.40 2 21915516 21918789

Neighbor

gene id symbol gene type direction distance location
ttc13 LOC106571397 coding downstream 10473 21887973 ~ 21905043 (-)
LOC110529599 LOC106571395 coding downstream 43054 21832528 ~ 21872462 (-)
LOC110529598 s22a2 coding downstream 93070 21816712 ~ 21822446 (-)
afdna LOC106571391 coding downstream 227452 21558958 ~ 21688064 (-)
trnal-cag-4 NA coding downstream 361376 21554058 ~ 21554140 (-)
LOC110529207 sprtn coding upstream 2784 21920427 ~ 21926307 (-)
c8h1orf131 cssa15h1orf131 coding upstream 39416 21958205 ~ 21961107 (-)
LOC110529611 LOC106571404 coding upstream 88961 22007750 ~ 22288163 (-)
LOC110529612 LOC106571405 coding upstream 391592 22310381 ~ 22315605 (-)
LOC110529614 LOC106571407 coding upstream 491215 22410004 ~ 22416404 (-)
G685784 NA non-coding downstream 2327 21912964 ~ 21913189 (-)
G685776 NA non-coding downstream 28781 21886461 ~ 21886735 (-)
G685721 NA non-coding downstream 117494 21751001 ~ 21798022 (-)
G685740 LOC106571393 non-coding downstream 134226 21772241 ~ 21781290 (-)
G685707 NA non-coding downstream 186166 21728885 ~ 21729350 (-)
G685762 exoc8 non-coding upstream 8258 21927047 ~ 21929631 (-)
G685868 NA non-coding upstream 128969 22047758 ~ 22048399 (-)
G685895 NA non-coding upstream 164123 22082912 ~ 22083121 (-)
G685903 NA non-coding upstream 170972 22089761 ~ 22090027 (-)
G685911 NA non-coding upstream 182852 22101641 ~ 22101894 (-)
G684844 NA other downstream 436313 21478766 ~ 21479203 (-)
G681659 NA other downstream 3123379 18791230 ~ 18792137 (-)
G679471 NA other downstream 4800988 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 5285257 16625090 ~ 16630259 (-)
G679087 NA other downstream 5482502 16432621 ~ 16433014 (-)
G685953 NA other upstream 240241 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 1698118 23614938 ~ 23659111 (-)
G687890 NA other upstream 1716520 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1836043 23754832 ~ 23756910 (-)

Expression


Co-expression Network