LOC110529207 (sprtn)


Basic Information

Item Value
gene id LOC110529207
gene name sprtn
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21920427 ~ 21926307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611331.2
CAGAATTCCCAAAAGCACCATAGACTGAAATTACACATATTTTGAACAAGCGAGAATTTTATGTAGTTTGTGCTGTTATCTACCTAAAAATTACCAACATTAATCTATATTTGACTTAAGCTGGATATTGAGgtgcacctcgtGCTGGGGACAACTCTAAAATGTTCTGTTTTGTcacatcacaatgccacagacgtctcaacttttgaggaagcatgcaattggcatgctgaccgcaggaatgtccaccagagctgttgccagataattgaatgtacATTTGTCTACCATAAGACGCCTCCAATTTCGTTTTAGAGATTTTGGAAGTActtccaaccggtctcacaaccacagagcggtctaagacactgcatctcagtgcaagaggcgtcactacagtccctggttcgattccaggctgtatcacatccggccgtgattgggataggacggagcacaattggcccagcatcgtccaggtttggccggggtaggccgtcgttgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttttaaaaaatctatataatatccagcaacttcacacagccattgaagaggagtgggacaacattccacaggccacaatcaacagcctgatcaactctatgcgaaagaGATGTTTTGCACTGCATGATGCAAATGGTGGTCAATACCAGGTatggactggttttctgatccacacccccaACTCTtttttttaaggtgtctgtgaccaacagatgcatatctgtattcccagtcatgtgaaatccataaattagggcctaatttatttcaattgaaggatttccttatatgaactctaaCTCTATAAAatcttttgaaattgttgcatgttgtgttaatTTTTGTTCAATGGAGCTATCCATCTAACTTGAATTATCTTTTCAACaccagtagctagctagttgaacAGGGACAAAGATGTTGTGCTTGCCATTCAGCTGCAGGAGCAGTTTGACTTTGAGGCATCCTCATACACACCAACTGATGATAACTATGGCTAAACCAGCAAAAAAATGAAAGTTGAGTCTAGCAGCAACGATGTCATTCCCTATTTATGTCCATCTTGACCCAAGTCCAGATGTGAGGGCAATGCTTCTGGAGTTCGATGACACGTTCTTCGGGGGAAAGCTCAGTGGTGTAGAAGTCAAATGGAGCCCCTGAATGATACTGTATGCAGGTGTGTGTTCTTACGAAGGAAGAGGTGGACTGTGTTTTATTCGACTCAGTGAGCCTTTACTGAAACTTAGACCCCTTTGGGATCTTGCACAGACACTTCTGCATGAGATAATCCATGCACTGCCCTTCGTGAGTTAGAACAACAGAGGTCATGATGGGCATGGACCTGAGTTCTGCAAGCACATGGAAAGAATCAACCAAGCCGCTGGAACTGAAATCGCAGTCTATCACACTTTCCATGATGAAGTGGATCTCTACCGTCCGCACTGGTGACTGTGTGATGGGCCCTGTCAGACTCGTAAGCCCTACTTTGGATATGTGAAGAGGGTAATGAACCGTGCCCCCTCAGCCCAAGACACATTGTGGGGGGATCACCTACGCTCCTGTGGGGGCACCTATACAAAGGTCAAGTAGCCAGAGGGTTATGGAAAGAAAGTAAAAAAGACAGACAACAGCCAAGGCAAGAAGCCTACAGACAAGCCCACAAGCAAGTGCAAAGCTTCCAGCACATCTACTGCAGacctgtactgtctcctccaCCTCAGGCAACAGCTAAAGGAATCAACTCACCTGAACGGCCAGGTCTGA
>TU780899
CCTCATACACACCAACTGATGATAACTATGGCTAAACCAGCAAAAAAATGAAAGTTGAGTCTAGCAGCAACGATGTCATTCCCTATTTATGTCCATCTTGACCCAAGTCCAGATGTGAGGGCAATGCTTCTGGAGTTCGATGACACGTTCTTCGGGGGAAAGCTCAGTGGTGTAGAAGTCAAATGGAGCCCCTGAATGATACTGTATGCAGGTGTGTGTTCTTACGAAGGAAGAGGTGGACTGTGTTTTATTCGACTCAGTGAGCCTTTACTGAAACTTAGACCCCTTTGGGATCTTGCACAGACACTTCTGCATGAGATAATCCATGCACTGCCCTTCGTGAGTTAGAACAACAGAGGTCATGATGGGCATGGACCTGAGTTCTGCAAGCACATGGAAAGAATCAACCAAGCCGCTGGAACTGAAATCGCAGTCTATCACACTTTCCATGATGAAGTGGATCTCTACCGTCCGCACTGGTGACTGTGTGATGGGCCCTGTCAGACTCGTAAGCCCTACTTTGGATATGTGAAGAGGGTAATGAACCGTGCCCCCTCAGCCCAAGACACATTGTGGGGGGATCACCTACGCTCCTGTGGGGGCACCTATACAAAGGTCAAGTAGCCAGAGGGTTATGGAAAGAAAGTAAAAAAGACAGACAACAGCCAAGGCAAGAAGCCTACAGACAAGCCCACAAGCAAGTGCAAAGCTTCCAGCACATCTACTGCAGGCTCTGGATTACAGGATATAAGGAATATCATTCCATTCAGTGACAAAGGTTTTTTGCTTGGAGGGAGTTCACAGCCACCATCATCAACTCAAAAACCTCTTGTCAACAGTCCTACAAAACCTCTCAATACTCCTGTGTCTCCCagacctgtactgtctcctccaCCTCAGGCAACAGCTAAAGGAATCAACTCACCTGAACGGCCAGGTCTGATTATCCCACAGAAGAAGGGGAGCACCACAACTTACATAGCAAGGGGAGCCCATGGTTCCTTCAGAGGACAGAAATGACCAAAAATGTCAGCAAAACCAAGGCATTTTTAAACATCAATGGTTCACCTGCTAGGGTTTACAAACCCAACAGCACTGTGACCAAGCCACATAGTGACTCCTCAGATGCTTTAAAGACCAAACAAAGTTGTGTCCAAGGCCTTGTTAATGCCAAGTGGCTGGAAGTCTGGAACTGCAGCTAGTAGTAGTACCTCCACGGTCTCAAAACCAGCAGCAGAGACCAAAAGGGCATCTTCATCTGTGGGTGGTTTGAACTTTGGGAAACCAGCCACAAACTGCCATTTCCTCAGATACCAGACAGCCATTTCTCTGGTGTTCCGGCCGCATCAAAACCTGGGTCCCCCGAGCCTTACCATTCCAACTATTTCGAAGGCCCTGAAAATCCTAGTAGAGTCAACATTCCAGTTTCTAGGAAGAGGCCTTGGGAAGACTAAACTTCTGCTCACATCTTTGACCATCAACGTCTAGGTGTACAACGGAGGACAAAGCAGCCCCTTCTGCTGTTCAGAACAGCACTGCCAGCTCTGCAAGCCTTAATGTGACCGTCAGCGGCCCAGTATGCCAAGCCAAGGTGCAATAGTCAATAATCAATGCACATTTAGATTCCTGTCTCTCATGAGAACGGAAACGTGAGCTGAAAGCCCAGCAACCATTTTATATTGCAAAACTTTTCACAAGTCTCAGCATAGGTGAAGTTTTAGAGTTTGTTTCCTTGAATTCAAAGCCGATTTTGCTTATAAGTTTAAATGTACTTTCTATCTCATGTAGGACTGCTGTAAGAGATACAGGTTTGAAGTTTTCCAGTTTGACTTTTGCTTGCATCTACTATGTCTTGTAGCCCATTGTTCAATTGTGAAATTCTAACTCAAACTATCCAAATGTTTTAGCGTTGGAAATGTCCTCTCTTAGGAAGAATTGATTTAATTGGTACCACTTCTACTTGATGGCTCAAGGCAATATTGATATGACATAGGCAATTTATATAGTTGCTGCGGTCTTGAATTTGAAATATGTCTGTCTGGTATGCTGATCTGGTATTATAACATTTCACACATGCTTGCTATTCACT
>TU780900
CCTCATACACACCAACTGATGATAACTATGGCTAAACCAGCAAAAAAATGAAAGTTGAGTCTAGCAGCAACGATGTCATTCCCTATTTATGTCCATCTTGACCCAAGTCCAGATGTGAGGGCAATGCTTCTGGAGTTCGATGACACGTTCTTCGGGGGAAAGCTCAGTGGTGTAGAAGTCAAATGGAGCCCCTGAATGATACTATTGTATAAAGTCTCTTTATACAATCTTCAATTGTAGGTATGCAGGTGTGTGTTCTTACGAAGGAAGAGGTGGACTGTGTTTTATTCGACTCAGTGAGCCTTTACTGAAACTTAGACCCCTTTGGGATCTTGCACAGACACTTCTGCATGAGATAATCCATGCACTGCCCTTCGTGAGTTAGAACAACAGAGGTCATGATGGGCATGGACCTGAGTTCTGCAAGCACATGGAAAGAATCAACCAAGCCGCTGGAACTGAAATCGCAGTCTATCACACTTTCCATGATGAAGTGGATCTCTACCGTCCGCACTGGTGACTGTGTGATGGGCCCTGTCAGACTCGTAAGCCCTACTTTGGATATGTGAAGAGGGTAATGAACCGTGCCCCCTCAGCCCAAGACACATTGTGGGGGGATCACCTACGCTCCTGTGGGGGCACCTATACAAAGGTCAAGTAGCCAGAGGGTTATGGAAAGAAAGTAAAAAAGACAGACAACAGCCAAGGCAAGAAGCCTACAGACAAGCCCACAAGCAAGTGCAAAGCTTCCAGCACATCTACTGCAGGCTCTGGATTACAGGATATAAGGAATATCATTCCATTCAGTGACAAAGGTTTTTTGCTTGGAGGGAGTTCACAGCCACCATCATCAACTCAAAAACCTCTTGTCAACAGTCCTACAAAACCTCTCAATACTCCTGTGTCTCCCagacctgtactgtctcctccaCCTCAGGCAACAGCTAAAGGAATCAACTCACCTGAACGGCCAGGTCTGATTATCCCACAGAAGAAGGGGAGCACCACAACTTACATAGCAAGGGGAGCCCATGGTTCCTTCAGAGGACAGAAATGACCAAAAATGTCAGCAAAACCAAGGCATTTTTAAACATCAATGGTTCACCTGCTAGGGTTTACAAACCCAACAGCACTGTGACCAAGCCACATAGTGACTCCTCAGATGCTTTAAAGACCAAACAAAGTTGTGTCCAAGGCCTTGTTAATGCCAAGTGGCTGGAAGTCTGGAACTGCAGCTAGTAGTAGTACCTCCACGGTCTCAAAACCAGCAGCAGAGACCAAAAGGGCATCTTCATCTGTGGGTGGTTTGAACTTTGGGAAACCAGCCACAAACTGCCATTTCCTCAGATACCAGACAGCCATTTCTCTGGTGTTCCGGCCGCATCAAAACCTGGGTCCCCCGAGCCTTACCATTCCAACTATTTCGAAGGCCCTGAAAATCCTAGTAGAGTCAACATTCCAGTTTCTAGGAAGAGGCCTTGGGAAGACTAAACTTCTGCTCACATCTTTGACCATCAACGTCTAGGTGTACAACGGAGGACAAAGCAGCCCCTTCTGCTGTTCAGAACAGCACTGCCAGCTCTGCAAGCCTTAATGTGACCGTCAGCGGCCCAGTATGCCAAGCCAAGGTGCAATAGTCAATAATCAATGCACATTTAGATTCCTGTCTCTCATGAGAACGGAAACGTGAGCTGAAAGCCCAGCAACCATTTTATATTGCAAAACTTTTCACAAGTCTCAGCATAGGTGAAGTTTTAGAGTTTGTTTCCTTGAATTCAAAGCCGATTTTGCTTATAAGTTTAAATGTACTTTCTATCTCATGTAGGACTGCTGTAAGAGATACAGGTTTGAAGTTTTCCAGTTTGACTTTTGCTTGCATCTACTATGTCTTGTAGCCCATTGTTCAATTGTGAAATTCTAACTCAAACTATCCAAATGTTTTAGCGTTGGAAATGTCCTCTCTTAGGAAGAATTGATTTAATTGGTACCACTTCTACTTGATGGCTCAAGGCAATATTGATATGACATAGGCAATTTATATAGTTGCTGCGGTCTTGAATTTGAAATATGTCTGTCTGGTATGCTGATCTGGTATTATAACATTTCACACATGCTTGCTATTCACT

Function

symbol description
sprtn Predicted to enable double-stranded DNA binding activity; metalloendopeptidase activity; and single-stranded DNA binding activity. Acts upstream of or within DNA damage response, detection of DNA damage. Predicted to be located in chromatin and nucleus.

NR:

description
PREDICTED: sprT-like domain-containing protein Spartan

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611331.2 False 1812 mRNA 0.44 6 21921573 21926307
TU780899 False 2089 TUCP 0.45 5 21920427 21924908
TU780900 True 2126 TUCP 0.45 5 21920427 21924908

Neighbor

gene id symbol gene type direction distance location
LOC110529605 LOC106571399 coding downstream 2784 21915516 ~ 21918789 (-)
ttc13 LOC106571397 coding downstream 16530 21887973 ~ 21905043 (-)
LOC110529599 LOC106571395 coding downstream 49111 21832528 ~ 21872462 (-)
LOC110529598 s22a2 coding downstream 99127 21816712 ~ 21822446 (-)
afdna LOC106571391 coding downstream 233509 21558958 ~ 21688064 (-)
c8h1orf131 cssa15h1orf131 coding upstream 31898 21958205 ~ 21961107 (-)
LOC110529611 LOC106571404 coding upstream 81443 22007750 ~ 22288163 (-)
LOC110529612 LOC106571405 coding upstream 384074 22310381 ~ 22315605 (-)
LOC110529614 LOC106571407 coding upstream 483697 22410004 ~ 22416404 (-)
LOC110529617 LOC106571409 coding upstream 520408 22446715 ~ 22459584 (-)
G685784 NA non-coding downstream 8384 21912964 ~ 21913189 (-)
G685776 NA non-coding downstream 34838 21886461 ~ 21886735 (-)
G685721 NA non-coding downstream 123551 21751001 ~ 21798022 (-)
G685740 LOC106571393 non-coding downstream 140283 21772241 ~ 21781290 (-)
G685707 NA non-coding downstream 192223 21728885 ~ 21729350 (-)
G685762 exoc8 non-coding upstream 740 21927047 ~ 21929631 (-)
G685868 NA non-coding upstream 121451 22047758 ~ 22048399 (-)
G685895 NA non-coding upstream 156605 22082912 ~ 22083121 (-)
G685903 NA non-coding upstream 163454 22089761 ~ 22090027 (-)
G685911 NA non-coding upstream 175334 22101641 ~ 22101894 (-)
G684844 NA other downstream 442370 21478766 ~ 21479203 (-)
G681659 NA other downstream 3129436 18791230 ~ 18792137 (-)
G679471 NA other downstream 4807045 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 5291314 16625090 ~ 16630259 (-)
G679087 NA other downstream 5488559 16432621 ~ 16433014 (-)
G685953 NA other upstream 232723 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 1690600 23614938 ~ 23659111 (-)
G687890 NA other upstream 1709002 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1828525 23754832 ~ 23756910 (-)
G688109 NA other upstream 2061792 23988099 ~ 23988854 (-)

Expression

LOC110529207(sprtn) Expression in all Baseline Samples

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LOC110529207(sprtn) Expression in each Bioproject

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LOC110529207(sprtn) Expression in each Sample
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Co-expression Network