LOC110529612 (LOC106571405)


Basic Information

Item Value
gene id LOC110529612
gene name LOC106571405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22310381 ~ 22315605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611967.2
ACGAGGGAGCCCCCGAGTAGTGGTTATTCCTCCAGCCAGCTGTGCACTGAACCAGCCCCAGCCTACAACCACGGCAGCACGCTGGCTTGGCTGACTCAGAGACAGGAAGGGTTGGGCACAATGGGACAGGTCCAGCAAAACATGAGTAGGCCTGCAAACAACAGCTGTTGAAGTGCAGCCCAGATAATAACACCAGAATGAGCCTCCCCAAAAGGGTCTCCCTCTGGACCGTGGTGGATGTGTTTGACTGGGTCAAGGAGCAGTACCCCAACCAAAAGAGTGTCCTCCAAGTGGCCATCTTCAAGCATGACATATCCGGCCGAGCTCTGCTGAGGATGGGTGAACACCAATTGGAGAGgatgggggtggaggtggagcaTCTTCAGGAGATCCTACTGGACATCCTTCTCCTCAGGGTCCAGGAGGAACTTGAGAACCTTAACGACATCTTCTCTGAGTGTTTCTCTTCATGACTATAACAGAAGAAGAGGTCTGAGATATCATTATTTAGTCCATCTACGGTGTGGAGGACTAGAGAAGAAAAAATACATTTGCTTTCAGTAGTCATTGACCTGAAGAAGGCGGCCAGATTGGTTTTGGCATGGTTGTAGTTTTACTGACACGTCTGTGAATCAAGCCCTTACCCCTCGCTCTGCGCTGCTCTTGTGGTCTTATTTTTCACAATACTCAATACACTATGTGGCAGCTATTGCAGAGGGAGAACATCATTCCCCACTTGAACAGGGGATACAGTGCATCCCTCATCTGGACTAAATGTTGCAAtcccataccaagcagtgatttgGCTAGCTAATGGCCTGTTATATTACTCTCAGGAGACCCTGTGTGAATTAGAATGGAGAGTAAGTAAATTAGTCCTGAGTTTAATGCAGGGACACATGGCCATAATTTAGATAACAACCCAAATGCTGCTCAAACCTATTAGGCCCTACACAGGGAACATAATAGGATCATTTAATGGGAAATTTCTGGCAGAGACAAAATGGCTTTAAAGTTTTATGTATTTGCTTATATAGTTTTATGTTGGAGTAGGAATGTTGTGTCTGACTGAAACTCGTCTTTATTTAGCTTTTGTTGCTCCACACCTCATGTTTGTAAGACGTCAGCAGTTTTTCTGTCTGTCAAATACAATGCAATGTCTAGCAAATCTTTAAATGGAACACAACTACGCATAGAATCCCTCCAGTATGACTACCCAGCTAGGAATGTACTCTATGCAGATATATCCTATTTTATTTGCTCCGGGAACACATTCATATAAACAGTTCATTGTGTAATCATGTGCTTGCTTAAATTGCTCAGAGATAACAGTTTTGCATATTAAGTGGAGCAAATGAAAGGGCTACGTTTGCAAATACAAAATCTTTTTATGTTTCAAATCCTCCTTCCTCAGAGAAATTCCTCCCCAGACGTAAATGTCCTGTCCATTGTATAATGATAACGTTTGTTTGCTCCAGTTTGAAGTATTTTGGTGCATCCCTAAGGTTCTGCACGTTTCATTAGACACTACATGCACATGAAAAACTGCAGGACTGTCAAATCTGAGCTCAAACAGTACCTTAGCAAAGCATACAACGCAGTTCAACTCCAAACCACTATACCTGTATTATAGTGTAATGTTTTCATAAACAGGAAACGCTATGTTTAGACATCCATTTGCTATCCAGCCTagaacacaggagagaaacaagTTACTCCAGTGAAGAGATGAGGATGAAATGTCACGAGGGTGTTTAGTGGGTGAATCTGTGGATGAACCCTATTTAGTGCATGAGTCTGACCTGACAGCTCATATTTGCTAATAAAGACCAAATCTGATCATT
>XM_021611968.2
CACACGAGGGAGCCCCCGAGTAGTGGTTATTCCTCCAGCCAGCTGTGCACTGAACCAGCCCCAGCCTACAACCACGGCAGCACGCTGGCTTGGCTGACTCAGAGACAGGAAGGGTTGGGCACAATGGGACAGGTCCAGCAAAACATGAGTAGGCCTGCAAACAACAGCTGTTGAAGATGCTCTCATCCAGAACAACTTACATTTAGAGCATTCATCTCAAGATAGCTGGTGCAGCCCAGATAATAACACCAGAATGAGCCTCCCCAAAAGGGTCTCCCTCTGGACCGTGGTGGATGTGTTTGACTGGGTCAAGGAGCAGTACCCCAACCAAAAGAGTGTCCTCCAAGTGGCCATCTTCAAGCATGACATATCCGGCCGAGCTCTGCTGAGGATGGGTGAACACCAATTGGAGAGgatgggggtggaggtggagcaTCTTCAGGAGATCCTACTGGACATCCTTCTCCTCAGGGTCCAGGAGGAACTTGAGAACCTTAACGACATCTTCTCTGAGTGTTTCTCTTCATGACTATAACAGAAGAAGAGGTCTGAGATATCATTATTTAGTCCATCTACGGTGTGGAGGACTAGAGAAGAAAAAATACATTTGCTTTCAGTAGTCATTGACCTGAAGAAGGCGGCCAGATTGGTTTTGGCATGGTTGTAGTTTTACTGACACGTCTGTGAATCAAGCCCTTACCCCTCGCTCTGCGCTGCTCTTGTGGTCTTATTTTTCACAATACTCAATACACTATGTGGCAGCTATTGCAGAGGGAGAACATCATTCCCCACTTGAACAGGGGATACAGTGCATCCCTCATCTGGACTAAATGTTGCAAtcccataccaagcagtgatttgGCTAGCTAATGGCCTGTTATATTACTCTCAGGAGACCCTGTGTGAATTAGAATGGAGAGTAAGTAAATTAGTCCTGAGTTTAATGCAGGGACACATGGCCATAATTTAGATAACAACCCAAATGCTGCTCAAACCTATTAGGCCCTACACAGGGAACATAATAGGATCATTTAATGGGAAATTTCTGGCAGAGACAAAATGGCTTTAAAGTTTTATGTATTTGCTTATATAGTTTTATGTTGGAGTAGGAATGTTGTGTCTGACTGAAACTCGTCTTTATTTAGCTTTTGTTGCTCCACACCTCATGTTTGTAAGACGTCAGCAGTTTTTCTGTCTGTCAAATACAATGCAATGTCTAGCAAATCTTTAAATGGAACACAACTACGCATAGAATCCCTCCAGTATGACTACCCAGCTAGGAATGTACTCTATGCAGATATATCCTATTTTATTTGCTCCGGGAACACATTCATATAAACAGTTCATTGTGTAATCATGTGCTTGCTTAAATTGCTCAGAGATAACAGTTTTGCATATTAAGTGGAGCAAATGAAAGGGCTACGTTTGCAAATACAAAATCTTTTTATGTTTCAAATCCTCCTTCCTCAGAGAAATTCCTCCCCAGACGTAAATGTCCTGTCCATTGTATAATGATAACGTTTGTTTGCTCCAGTTTGAAGTATTTTGGTGCATCCCTAAGGTTCTGCACGTTTCATTAGACACTACATGCACATGAAAAACTGCAGGACTGTCAAATCTGAGCTCAAACAGTACCTTAGCAAAGCATACAACGCAGTTCAACTCCAAACCACTATACCTGTATTATAGTGTAATGTTTTCATAAACAGGAAACGCTATGTTTAGACATCCATTTGCTATCCAGCCTagaacacaggagagaaacaagTTACTCCAGTGAAGAGATGAGGATGAAATGTCACGAGGGTGTTTAGTGGGTGAATCTGTGGATGAACCCTATTTAGTGCATGAGTCTGACCTGACAGCTCATATTTGCTAATAAAGACCAAATCTGATCATT

Function

NR:

description
sterile alpha motif domain-containing protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611967.2 False 1844 mRNA 0.43 5 22310381 22315602
XM_021611968.2 True 1900 mRNA 0.43 6 22310381 22315605

Neighbor

gene id symbol gene type direction distance location
LOC110529611 LOC106571404 coding downstream 22218 22007750 ~ 22288163 (-)
c8h1orf131 cssa15h1orf131 coding downstream 349274 21958205 ~ 21961107 (-)
LOC110529207 sprtn coding downstream 384074 21920427 ~ 21926307 (-)
LOC110529605 LOC106571399 coding downstream 391592 21915516 ~ 21918789 (-)
ttc13 LOC106571397 coding downstream 405338 21887973 ~ 21905043 (-)
LOC110529614 LOC106571407 coding upstream 94399 22410004 ~ 22416404 (-)
LOC110529617 LOC106571409 coding upstream 131110 22446715 ~ 22459584 (-)
LOC110529618 LOC106571410 coding upstream 166175 22481780 ~ 22496418 (-)
txlnba LOC100194672 coding upstream 217551 22533156 ~ 22562329 (-)
cited2 LOC106571411 coding upstream 259515 22575120 ~ 22577512 (-)
G685973 NA non-coding downstream 116198 22193535 ~ 22194183 (-)
G685953 NA non-coding downstream 149339 22159030 ~ 22161042 (-)
G685911 NA non-coding downstream 208487 22101641 ~ 22101894 (-)
G685903 NA non-coding downstream 220354 22089761 ~ 22090027 (-)
G685895 NA non-coding downstream 227260 22082912 ~ 22083121 (-)
G686073 NA non-coding upstream 37995 22353600 ~ 22354283 (-)
G686090 LOC106571406 non-coding upstream 66509 22382114 ~ 22393749 (-)
G686106 topk non-coding upstream 90660 22406265 ~ 22409834 (-)
G686138 NA non-coding upstream 183578 22499183 ~ 22499507 (-)
G686139 NA non-coding upstream 185628 22501233 ~ 22501469 (-)
G684844 NA other downstream 831178 21478766 ~ 21479203 (-)
G681659 NA other downstream 3518244 18791230 ~ 18792137 (-)
G679471 NA other downstream 5195853 17113543 ~ 17114528 (-)
LOC110529643 LOC106571435 other upstream 1301302 23614938 ~ 23659111 (-)
G687890 NA other upstream 1319704 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1439227 23754832 ~ 23756910 (-)
G688109 NA other upstream 1672494 23988099 ~ 23988854 (-)
G688366 NA other upstream 2109458 24425063 ~ 24425553 (-)

Expression


Co-expression Network