LOC110529616 (LOC106586086)


Basic Information

Item Value
gene id LOC110529616
gene name LOC106586086
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22419790 ~ 22433035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110529616
ATGGATGTAGGCCAAATAGGTTTCCATCGGCACAAGGAGATTAAGATTGTGGCAGTAGAGAGGAAGATTAATGAGATTGTGAACAGGTTGGAGAAAACAAAGGACGAGCGATACCCTGATCTGGCAGCAGAGAAAGAGTCCCGAGATACGGAAGAGAGAAACGAGAAGAAGGCCCAGATACAAGATCTGAAAAAGAAAGATAAAGATGGCATAAAAAAGAAGAGAGCTGGATGAGCTCAACAGTTATTCTTCGCTGATGACGAGTGACAATATGACAACAACTGAGGATGGAAATGATTCGGATGACTTCATGTAAAAGGACAATATCGGACATACTCCACCACCTGCAAGTAAACATTGTTGGGTTGGGCCCTCACTGTTATAACGGACAGTGCTTTGACATTGTATATAGATCGATAAACTTGCTACTGTATTTTTGGAACAGTACGTGTGCCAATTTTGCTAAAATTTCAGGACTCTCTGAACAGCCTGGTTTCCCGACACTTCTTGAATTTCAAAGGATAACATTCCAACAGCATTGATCTCTTGCAGTGAACATCCTCTGCTTGACTGACAAGAGGGTAACAACAACCCCCGATTCCTCAGAAAACTGCTGCCAACGATTTAGTCTTGGGACGGTTCAGTATTGTTGCATGTTGACCTAATGATATGAATTAATATATGATTTCCTGACCAGTATGTCTATGGGGGAAATTAAATGAGTATGTACATTTTTAATTATAATTTACCTGGCCAATGCTGCAGACGTTGTCCTGGCCAGAGACTGGAACATGTGAATTGTGTCCTCGTGAATCCATGCATAAGGTTTGTCTTGGATGTTTCTTTGAAATTATTGAAAGATTGCTGACATTGTGAATAAAAATCACCTTTGTTTATCA
>TU780594
CACGCTAGATTGCTAATTAGCATATGTGGTCGCTGCTTGTCTGTTTACcgtaaacaagcgctgtaacatggagatatgatCGTGTGGGAAAACTAACACTATcaaggtgtgtatcaatttaaccttttTGTTTGTTCAAAATAATTTAtcactgatatgaaagataagttccttatgcttccaaaaccaAACCACAAGTGACGCGTGTTAATGGTAAGATTAACGCTTCGAAAACACGGACTGCGTCATTGCATCACTGCTGCATAACATTTTTTGCGCACCTAGgcaactatactgatgcaggtaccttttgcAAATGGTCGCATGCAGTTGGACACATGGAGGAGAGAATCATTTTTGCAGTATCCTCAAAACCGTGTCTCTTTGACACAACTGCTGACAGCTACAGGGACATAAACACAAAAAATGCTGCTTGGAGACAAGTGTCCACGGTAGTAGGATTGCCAGGTCAGTTTAGTAGTGAGCTTGTGCTAGATGTGGCTAgcagcgttagctagctagctaacctagcCAATGAGGTGTATGTGAAAGAAATAGTCAAATAAATTATGCAAGTTACTACCCTTGATAACTTTCCCAAATAATCATGTGTGAAAGAGTGTGAGTTTGTATGCTAGATTAATAGAAatggtagatactactgtaccctgataatttggtcagataacagtgtgtgtcagtgtacagTAGGTGACAAGTCCATGATAGCTATCTAATAACTATAGTTATGCTAGGTAATGGTTTGGCTTATCATGTTCATGTCTATGTAGAAGAAGACTGtaggaggaagtggagaggacTCAGGGacaggtatgagagagagagagagaagggcagagaaagagaagaagaggtctGGGTCAGCAGCCTTGGTGCTTCTGCGACATTCTTTCTTTTCTGGATCCATTTATTGTGGCTAGGGCATCGAGTGGCAATTTTACAGCCAGACCCTCTACTACGTCATCCACAAGTGTTGTCGCCACCGGTGCATCAAGACCCTCAACGTCACCTACAAATGCGACCATCACCTCCACCGGTGGAGTGAGACCCTCTACAACATCATCCACGAGTATGACCACTACCGGTGCAGCCATGGAAGATGATGAAATGGAGGAAGCACCTCTGAATCTAGGACCACCTGAGATTATTATGAACCTCACGGAAGTGACCACTGAGGACCTCGTTGAACAGGATGTGGCcgtggagagaaacagagaaacgaAGAGCAACAACATCACACCAGGCGTCATCGGAGGTACCAGCCCCCAGATCCAATCAACTCATTTCAGCAGAGGCTCCTCCAAGCAGTCGAGCGGGATGCAGCCCAACCTGATGATCACAGGAAGGAGACCCTCTTTGCCATGAGCCTGGTGCAAACACTGAAGAGGCTGCCTCAGCAAAGAAAAGCAACAGTCAAGGTTAAAATGTATCAGCTGCTTTTCGAAGCCGAGTTCAATGAGATGGAGTCCAATTTAACAGACAAGCTCacaggaaggacaggaagaggaggagttgaCTGGTTGTTGTTTTGACCTCCCTCATTGTACCTTTCTTTTCACACACGTCAGTTCTGtttaaattcagtcaattcaTAAAGTAATTTGTTTATAAAGTCTTAGGATAGCATTCATTATTAGTTTTACATAGATTTCTGAATTGAAACTCATGCAGAGTTTTCACAGATGCTCTTGGTCTCTTACAAGACTAAAGGTcaatatatttctttcatttaAAACCACTTGAAAACCAGGGTGTTGAAACTGTTTGTGAAGTTATGTTCCATCGACTGGTCTGCGACGTCCAGGGGCCATTTGTTTGTTTAGCTGTGTTATGGCTACATATTATTCCCTTTTTCtcagagacagacaaacacacctcaGATCTCCAgtgccctgccctctctctctttatggccATGTCTGAAGTTCCCCTACTACGTCTAGGCTTTATGAGTAGTCCCTGTATcggtctgcagttgtgccaaaaaTACATGCTCTTGCTGTTCTCTTACAGATTACAGGCTACACATTCATTTAAAAacttctctcttttttttgtacacgcatgcacacacacctctttcaatagttttattttttaaaacatttttacaacTCAC
>TU780598
CACGCTAGATTGCTAATTAGCATATGTGGTCGCTGCTTGTCTGTTTACcgtaaacaagcgctgtaacatggagatatgatCGTGTGGGAAAACTAACACTATcaagATGAAGATCTCATCAAATATGGATGGCCTGAAGACATTTGGTTTCATGTGGATAAACTCTCTTCTGCCCATGTGTACCTTAGAATGCCTAAGGGACTGACAATTGAGGATATTTCCAAGGAAGTCTTGATTGACTGTGTACAGCTTGTGAAAAACAACAGCATCCAAGGTAATACATTGAGTGGCCCGGTGAGTTTGATtagaataatataatagtaaTGTAGAAACCTCCTCCAGGAAACTTTGATCCTTTTAACTCAGGATGTAAAATGAACAACTTCAATGTTGTCACCATGGGCCAACCTAAAAAAAAACAGGGGACATGGATGTAGGCCAAATAGGTTTCCATCGGCACAAGGAGGTCAGTGATTTCTCTCTTCTGGCAAAATGTATCTGTGTAACTTTCGGATCTATTTGGCTACTTTTATAGGTCTCAGCTTTCATTGTCAATATATTTTTAGTTTCTATTGGTGTTCTATTTGAGTAATATCTATGAAATGATCATTTAGAATATGTCTACTGTTTTGTAGATTAAGATTGTGGCAGTAGAGAGGAAGATTAATGAGATTGTGAACAGGTTGGAGAAAACAAAGGACGAGCGATACCCTGATCTGGCAGCAGAGAAAGAGTCCCGAGATACGGAAGAGAGAAACGAGAAGAAGGCCCAGATACAAGATCTGAAAAAGAAAGATAAAGATGGCATAAAAAAGAAGAGAGCTGGATGAGCTCAACAGTTATTCTTCGCTGATGACGAGTGACAATATGACAACAACTGAGGATGGAAATGATTCGGATGACTTCATGTAAAAGGACAATATCGGACATACTCCACCACCTGCAAGTAAACATTGTTGGGTTGGGCCCTCACTGTTATAACGGACAGTGCTTTGACATTGTATATAGATCGATAAACTTGCTACTGTATTTTTGGAACAGTACGTGTGCCAATTTTGCTAAAATTTCAGGACTCTCTGAACAGCCTGGTTTCCCGACACTTCTTGAATTTCAAAGGATAACATTCCAACAGCATTGATCTCTTGCAGTGAACATCCTCTGCTTGACTGACAAGAGGGTAACAACAACCCCCGATTCCTCAGAAAACTGCTGCCAA
>TU780596
GCCCATCGCCATCCAGAGCGGCTCCTGGAATGACCTCCGCAGGTAGTTGTGGAGAACACATGTGGCCTTCACGCAGGCATCGACATTTGAGGGGCTGAGACCAAGCATTCTCCGGTACATTCTCCACTGGGCTGCCAGAATCCCAAAGGTGCATTCAACAACTAACCTTGCCCTGGACAGTCGTTTGTTAAAGATCCTTACAAGCTTTGGCAATGGCAGCTGGCGTCCAGCGTAGGGCCTCATGAGGTTGGGCCTTAAAGGGAAGGCCTCATCACCGACGAAGACGTGGGGAACAGGTCCCAGTACTATTTTCAAGCGATCTTCAgatgccgtagccagtatacacttatGCAAAATAGTGAGAATTATTGTAAGTTAAGAAATCTGCAGTATTTCTCAAGCGataaaatgtgcatgaaaacaaaTATCGTTGAATGACAAACACTTCATTGAGAATCCCTGATGTTGACCAGTGACCGaggaaggggcgtagacttcggttCCGAACTTTGTCTTGCCTCAAGAAAGAATGTGTGAACGAACAGCCCAAAAAAACCTTCCGACCTGTTTCGGAAGGGAAGCATGCGGACTACTTTACTTTACACAGGAGGCATGTCCGACCCTAGTTCGGCTGTAATCAAGCGGGTCGGATCTGACTACCCAGCTTACTTTCGGCTGCTTTCTCACTATTAGATGAAGATCTCATCAAATATGGATGGCCTGAAGACATTTGGTGAGAAACTCATATCTATTTCTTCTTGTAACTCAAACCATGAAATACATTATTAGGATTTGAACATTTGATGAGTCCGACCGTTGGTTCTATGTATACATTACTCTATGTAGTGTTGAAGAATATCCACCAGGTGGCCCTAGAGCTAGGCTAATAGTACAGTAGTCCTATATCAGCTAATAGTGCTGTGGTAATATGCATGTTATTGATTATTTTAGTGTGGAGGTGTTATTGCTTTTATAATAGTAATTGTATTATTTCCACAGGTTTCATGTGGATAAACTCTCTTCTGCCCATGTGTACCTTAGAATGCCTAAGGGACTGACAATTGAGGATATTTCCAAGGAAGTCTTGATTGACTGTGTACAGCTTGTGAAAAACAACAGCATCCAAGGTAATACATTGAGTGGCCCGGTGAGTTTGATtagaataatataatagtaaTGTAGAAACCTCCTCCAGGAAACTTTGATCCTTTTAACTCAGGATGTAAAATGAACAACTTCAATGTTGTCACCATGGGCCAACCTAAAAAAAAACAGGGGACATGGATGTAGGCCAAATAGGTTTCCATCGGCACAAGGAGGTCAGTGATTTCTCTCTTCTGGCAAAATGTATCTGTGTAACTTTCGGATCTATTTGGCTACTTTTATAGGTCTCAGCTTTCATTGTCAATATATTTTTAGTTTCTATTGGTGTTCTATTTGAGTAATATCTATGAAATGATCATTTAGAATATGTCTACTGTTTTGTAGATTAAGATTGTGGCAGTAGAGAGGAAGATTAATGAGATTGTGAACAGGTTGGAGAAAACAAAGGACGAGCGATACCCTGATCTGGCAGCAGAGAAAGAGTCCCGAGATACGGAAGAGAGAAACGAGAAGAAGGCCCAGATACAAGATCTGAAAAAGAAAGATAAAGATGGCATAAAAAAGAAGAGAGCTGGATGAGCTCAAGTAAGTTCCCTTATCTCTGTCCAACCCTAGCTACATCACCTCTCTTCATCTGTCATCCCAAAACACTGTGAATAGTATGATAAACTCACACAGTAATTGTCCATTAATAGCAGTTATTCTTCGCTGATGACGAGTGACAATATGACAACAACTGAGGATGGAAATGATTCGGATGACTTCATGTAAAAGGACAATATCGGACATACTCCACCACCTGCAAGTAAACATTGTTGGGTTGGGCCCTCACTGTTATAACGGACAGTGCTTTGACATTGTATATAGATCGATAAACTTGCTACTGTATTTTTGGAACAGTACGTGTGCCAATTTTGCTAAAATTTCAGGACTCTCTGAACAGCCTGGTTTCCCGACACTTCTTGAATTTCAAAGGATAACATTCCAACAGCATTGATCTCTTGCAGTGAACATCCTCTGCTTGACTGACAAGAGGGTAACAACAACCCCCGATTCCTCAGAAAACTGCTGCCAA
>TU780597
GCCCATCGCCATCCAGAGCGGCTCCTGGAATGACCTCCGCAGGTAGTTGTGGAGAACACATGTGGCCTTCACGCAGGCATCGACATTTGAGGGGCTGAGACCAAGCATTCTCCGGTACATTCTCCACTGGGCTGCCAGAATCCCAAAGGTGCATTCAACAACTAACCTTGCCCTGGACAGTCGTTTGTTAAAGATCCTTACAAGCTTTGGCAATGGCAGCTGGCGTCCAGCGTAGGGCCTCATGAGGTTGGGCCTTAAAGGGAAGGCCTCATCACCGACGAAGACGTGGGGAACAGGTCCCAGTACTATTTTCAAGCGATCTTCAgatgccgtagccagtatacacttatGCAAAATAGTGAGAATTATTGTAAGTTAAGAAATCTGCAGTATTTCTCAAGCGataaaatgtgcatgaaaacaaaTATCGTTGAATGACAAACACTTCATTGAGAATCCCTGATGTTGACCAGTGACCGaggaaggggcgtagacttcggttCCGAACTTTGTCTTGCCTCAAGAAAGAATGTGTGAACGAACAGCCCAAAAAAACCTTCCGACCTGTTTCGGAAGGGAAGCATGCGGACTACTTTACTTTACACAGGAGGCATGTCCGACCCTAGTTCGGCTGTAATCAAGCGGGTCGGATCTGACTACCCAGCTTACTTTCGGCTGCTTTCTCACTATTAGATGAAGATCTCATCAAATATGGATGGCCTGAAGACATTTGAATGCCTAAGGGACTGACAATTGAGGATATTTCCAAGGAAGTCTTGATTGACTGTGTACAGCTTGTGAAAAACAACAGCATCCAAGGGCAGAGGCGGGAGCCGGGAGGACCACACACCTCCACGTATAGAGGGTCTGACTCTGGAGGGCAGACTGAGCTGTACCAACTACTACTGACCCGAACAGCTGGAGCCTCCAACAAAAGCAAACAAGGCTGTAAAATGCAGAGTGGGGGTGCTCACCTTGGAAAGGAACCCCTCTGGTGTAAGGAAACAGCCTCCACATGGGGGGTGATTTGAGCACCCCCACAAGAAGATGGACTGTGTTTCTCCACAGATGACCACTGTGTGTAAACTACCCAGGCAGGGTATAAAGGTCAGGGCTCGCTGCCATCAAACAGAACCCATCTCACTATCTGAGAGGATTGTACCATAGTTACAAGCAGAGTTCCCTGTGGATTTACCTTCAGCACATTTCACCACGCCAGCAGCAGGATATAGGCATCTGTAATCTGTGCACCAGCAGGATGGCCATCTCACCTACCCAACCTGCACCTCTCACAGGACAACAACAAGGATTCCTCCAGCTCCTCTCACCCATCCATGAGGCTTTTCTGAGCCAACAGTTAAATTACCTCAATAAAACGTATTTATGCATTGATGTATTTTCCGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110529616 False 899 mRNA 0.40 4 22424338 22425648
TU780594 False 2140 lncRNA 0.43 2 22419790 22422313
TU780598 False 1216 lncRNA 0.40 5 22419790 22425369
TU780596 False 2179 lncRNA 0.42 2 22423058 22425369
TU780597 True 1405 TUCP 0.49 4 22423058 22433035

Neighbor

gene id symbol gene type direction distance location
LOC110529615 topk coding upstream 14481 22406165 ~ 22409857 (+)
LOC110529613 LOC106571406 coding upstream 21313 22318493 ~ 22403025 (+)
LOC118965501 NA coding upstream 132075 22288286 ~ 22292263 (+)
gnpat LOC106571402 coding upstream 453545 21961001 ~ 21970793 (+)
LOC110529607 LOC106571401 coding upstream 465673 21931042 ~ 21958665 (+)
LOC100136120 LOC100136120 coding downstream 48317 22473965 ~ 22478556 (+)
LOC118965502 NA coding downstream 70797 22496445 ~ 22498272 (+)
LOC110531077 NA coding downstream 78224 22503872 ~ 22506362 (+)
LOC110529619 hdc coding downstream 81196 22506844 ~ 22512029 (+)
gje1 LOC106571413 coding downstream 379256 22804904 ~ 22809549 (+)
G685495 NA non-coding upstream 69908 22353532 ~ 22354430 (+)
G685415 NA non-coding upstream 191490 22232623 ~ 22232848 (+)
G685365 NA non-coding upstream 263077 22160623 ~ 22161261 (+)
G685215 NA non-coding upstream 498058 21925117 ~ 21926356 (+)
G685539 NA non-coding downstream 15350 22440998 ~ 22441208 (+)
G685562 NA non-coding downstream 40050 22465698 ~ 22465899 (+)
G685575 NA non-coding downstream 88413 22514061 ~ 22514365 (+)
G685610 LOC106571411 non-coding downstream 149472 22575120 ~ 22577488 (+)
G686253 NA non-coding downstream 260151 22685799 ~ 22686047 (+)
G685311 NA other upstream 340114 22083874 ~ 22084224 (+)
LOC110529590 LOC106571388 other upstream 999774 21406192 ~ 21424564 (+)
G684314 NA other upstream 1345467 21077070 ~ 21078871 (+)
G683845 NA other upstream 1716967 20707058 ~ 20707371 (+)
G685469 NA other downstream 21123 22446771 ~ 22448073 (+)
G685551 NA other downstream 54675 22480323 ~ 22482139 (+)
G686448 LOC106571417 other downstream 520853 22946501 ~ 22972836 (+)
LOC110529640 LOC106571431 other downstream 1058784 23484408 ~ 23524035 (+)
LOC110529210 ift172 other downstream 1558797 23961761 ~ 23991295 (+)

Expression


Co-expression Network