LOC110529617 (LOC106571409)


Basic Information

Item Value
gene id LOC110529617
gene name LOC106571409
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22446715 ~ 22459584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611973.2
GCTGCAGATGGTTACTGTCCAAGGTATTAGTTTCTTCTAGCTCTGAcggagagaggcaggaggagcaGCTGCTTTTAAGCAGACTAACTGTAGCATGTAGCCGAGTAGTCTCCATGCACTAATAGAGCTAGACTGTTTTATGTATGTGAGCTGCAGTTCAAGTGAGAAGTTGCTGGAGGAGACTTTTTCTGCAGAGAAGAGAGACTAGGACAGTCAGAGGCTGTTGTCCGGGCAACAACTTCTTCACATCCTCACCAAAGCTGCCTTGAAGAATCACCATGAAAGAAAGCTATTCCGGATACGAGAACCAGCTCTTTAAAGAGGAGGATCTTACTGGGGAGGAAGAAGAGATGCCTTCCTTTAGAGGAAGAACCAGAGGTGGCTGTGTGAAATGCCAGAAGACATATTCTCTGCAGCTGGCCGTCAAAGTGCTCTACGGTTTTTTTGTCTTCCTGATCATagcagtggcagtgctggcatCACTAGTATTTAGGAAGGTCGACAACTTATCAGAAGAGGAATCCTTTTATCATAAGAAGATTACTAAGGTCCAGCAAAGTATACAAGATCTCAGCACTACCAGAAACTGCTCTGACTGCTTCGACATGGCCCACTTCAGCGAGGAGATCAGTAGGCTGAAGAGGGAGTTTGAGGATCTCCAGAAAATGATCCTGGGACAGGAGCAGGTCCTGGATCAGGCCTCCCAGACCCAGCAGACCCTGAAGGCAGCCAGAAGCAGGATGACCCGAGACATGCAGAACTACTCTGTGTCCATCAGGCTCATCAACCAGTCCCTGGAGCGTTACTTAGACCAGGTGGACGGTTGGAAGGCGGTCATCACCGAGACGGACGAGAGCATGAAGACTCTGTCTCAGGATCAGTATGACCTCAAGGCCACGGTGAATCAGGTCAATACCACGGTGGCCCTCAACTCCTTGTGGATGGACGCCCTGCAGAGGAAGACCAATGAGGAGACATTGGTCCTGCAGAAGATGACGGTGGACTGGCAGAACTACAGCCGGGTGTTGAGCGGTCTGAAGTCCAACTCAAGCACCACCACTCAGACGGTGAGGAGCATCCAGAGTGGGATCTCGGCCACGCACCAGAGGATCAGCATGAGCTCGGAGATGGTGCACGACCTCACCCTGCAGGTGATGAACCTGCAGATGCAGCTGGACAATGTCACCTCCTTCATGGACGAGCACGAGGAGAACATGCACGACCTCCAATACCACTCCAAGTACTACCAGAACCGGACGGGCGAGAGGTTCATCACCCTGGATGCTCGCATGGACTCCATCGAGATGGAGATCGACACCATCTCATCCAGCATCAACGCCACGGTGAGCCACGTGCAGAGCATGTACAAGTACATCAACATCGAGAGCACGTCATGCCAGACGCGGATGGGTAGCCACACGGAGGACCTGCAGAACCTGAACAACACGGTGCTGCTACTGATGCACCTGGCTGTCACCCTGAGGCAGCAGTACATGCTGCTGAGCGTCCGTCTAGATGTGGACGCCAGGAACCTGTCCATGGTCATGGAGGAGATGAAGCTAGTGGACACGCACCACACCCAGCTCATCCAGaacttcaccattctcaaagGCGCACCGGGCCCACCTGGTCCAAAGGGGaacagaggggaaggaggaggcaAAGGTCCAGTTGGCCTGACAGGAAATAAAGGAGACAAGGGCCCAGCAGGGAACCGTGGTCCTCTGGGAGAGAAGGGCCCTATCGGGCCTAAAGGAGCTCAGGGGGAGCCAGGACCAACAGGGGCCAGAGGCGGAGTGGGTGTCAAAGGGGTGAAGGGTTCTCTGGGTCAACCAGGTCCACGTGGCGAGAGAGGCGAGAAGGGAGACATGGGTACTATTGGTAAGGATGGAATACCAGGTCCCAAAGGGCCACTGGGAATACAGGGCCAAGCAGGGCTCCCAGGGATCCACGGGCTGCCTGGCCCAAGAGGAAAGCCTGGGCCTGTTGGTCCACACGGGCCTCCCGGAATTCCTGGCCAACCAGATCTGCCAGCTTTCCCAGACACGGTGTCTTGAGGGGCCTCTGGTGTCTGATCACAACAAGGACAGGACGAGCCTCCATTGGACGTGGGGAAGTACTGGCAACCTGGcaaagggatggaggatgattgAAGAGGATGGAATGAATGGAGCATGGAAGAGTTCACTCTCAAGCGTTCCCCTTCATGTTACTCCATTCTTTTCCTTGGACATTCAATGGACACACCATTGAGCATATACACACAGCCCATGTTCAGGTATAAAGGAGACATTGATAACAAGAAGACTTGAGTTTAAAAAGATGCATTGCAAGTTGTCAGTATCATATACAGCTGAATGTATGTTTGAAGGAACCACAGCACTACCCTGGGGGCTTCATAAAGATCTAGGTTTACAATGCCATGCACTTTCATGAGGGTAGTTAAATAACAATAGATTTTTACACTAATTTGTGAAACATTAACACGTAAAATTCTATTCAATGGCACTTTTGGTTTTATAAAGTGTAGAAACTACAGTCATTTGTTATGTGTTTGCTTTTGTATCTTTTATGTTTCGGAGCAGGTTCTCTGAACACTGACTGAAGTTGAGATGATTCAACAGGTCATAGAGTGTAATGGTAAGGGATGAATGAAATTGCTGAAGAACCAAAGGTGTCTGCCTGGGTACACAATTATGGATGTATTGTATGTTAGTCAGTAATTGAACATTTCCTAAATGACTTAAAAGGTACGGTTTTGAAATATAGATATTTTTACAAGATGTATTTTTGGTTTTATGCCAACAATTTGCCATGTTACATTGAAGTGTTTTCAGATTTTCTAGTGTAGGTAATATACATCATTTTTGTTGTGTTTCCATTCATATTCATCTCCGCACATAATCAGAGCTGTGTGATGATCTGTGTATTTTAATAGcaaatacaaaacattaaaaaagttcaAATGATAA

Function

NR:

description
scavenger receptor class A member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611973.2 True 2972 mRNA 0.49 8 22446715 22459584
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529614 LOC106571407 coding downstream 30311 22410004 ~ 22416404 (-)
LOC110529612 LOC106571405 coding downstream 131110 22310381 ~ 22315605 (-)
LOC110529611 LOC106571404 coding downstream 158552 22007750 ~ 22288163 (-)
c8h1orf131 cssa15h1orf131 coding downstream 485608 21958205 ~ 21961107 (-)
LOC110529207 sprtn coding downstream 520408 21920427 ~ 21926307 (-)
LOC110529618 LOC106571410 coding upstream 22196 22481780 ~ 22496418 (-)
txlnba LOC100194672 coding upstream 73572 22533156 ~ 22562329 (-)
cited2 LOC106571411 coding upstream 115536 22575120 ~ 22577512 (-)
nmbr LOC106571412 coding upstream 330278 22789862 ~ 22803661 (-)
si:ch211-202p1.5 LOC106571542 coding upstream 470107 22929691 ~ 22950071 (-)
G686106 topk non-coding downstream 36881 22406265 ~ 22409834 (-)
G686090 LOC106571406 non-coding downstream 52966 22382114 ~ 22393749 (-)
G686073 NA non-coding downstream 92432 22353600 ~ 22354283 (-)
G685973 NA non-coding downstream 252532 22193535 ~ 22194183 (-)
G685953 NA non-coding downstream 285673 22159030 ~ 22161042 (-)
G686138 NA non-coding upstream 39599 22499183 ~ 22499507 (-)
G686139 NA non-coding upstream 41649 22501233 ~ 22501469 (-)
G686143 NA non-coding upstream 45078 22504662 ~ 22504934 (-)
G686153 NA non-coding upstream 65276 22524860 ~ 22525069 (-)
G686277 NA non-coding upstream 239578 22699162 ~ 22699380 (-)
G684844 NA other downstream 967512 21478766 ~ 21479203 (-)
G681659 NA other downstream 3654578 18791230 ~ 18792137 (-)
G679471 NA other downstream 5332187 17113543 ~ 17114528 (-)
LOC110529643 LOC106571435 other upstream 1157323 23614938 ~ 23659111 (-)
G687890 NA other upstream 1175725 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1295248 23754832 ~ 23756910 (-)
G688109 NA other upstream 1528515 23988099 ~ 23988854 (-)
G688366 NA other upstream 1965479 24425063 ~ 24425553 (-)

Expression

LOC110529617(LOC106571409) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
End of interactive chart.

LOC110529617(LOC106571409) Expression in each Bioproject

Bar chart with 19 bars.
LOC110529617(LOC106571409) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network