LOC100136120 (LOC100136120)


Basic Information

Item Value
gene id LOC100136120
gene name LOC100136120
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22473965 ~ 22478556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124418.1
GTTTGTACTGCATCAGTCGCTTGATATATGAGAAAAAGTGATGATGAAAGCATTAGGGTCAATAGTGGGCCTTGCTTGCTCCTGGTCTCTGCTCAGTGTCTACTGCCTCCATCCAAGGACGATCTAAGCCAGATTTCCCTCCTCGGAATGAAGTACCTGGACAAGCAGATAGAAAATGCTATCAGTGGGGTGAAGGAGATGAAGACAGTGATGGAGAGGTCTGGAGAGGACCATGAGAAGTTCCTGAGTGCCCTGGAGAAAACTTCACAGCAAAAAGAGGATGCTCTGAAGGCAGCTCAGGAGATGGAGACGAAGCTGAGTGAGGAGCAGGAGGTGTGTAACGGCACCATGCAGTCTCTGTGGGAGGAGTGCAAGCCCTGCCTGAAGAACACCTGCATCAAGTACTACTCCAGGACCTGCAGCAGTGGCGCTGGACTAGTCGGCAGACAGCTGGAAGAGGTTCTGAACAGGACCTCTCCATTCTCCATCTGGATCAACGGGGAGAACATGGATGTTCTGGAGCGAGAGGACCAGGAGCAGAGCTGGAGGTTCCAGAATCTGGAGGAGCGTTACTCCAACGTGGCCGATGGGGTGGACAGCATCTTCACTGACAGCATGAGGGTGTTTGACCACATGCGCTCCCTCAACCCTCCCATGTTCCCCAGCCCCTACCGCATGCCCAGCATCTGGGGTCAGGGTGAGAGGGCCAATGAGAGAGCAAAGGCGGGCGAGGTGCATTCCCGTGTGGTCAGGTCCCCTCTGAAGGACCCAGACTTCCATGGGTTCCACAACATGTTCGCTCCCATGATGGACATGGCCTGGAATATCTTTGGCTCCATGGGGCCTTTCATGGATGCAGATGCTAACTTTGACATCAACCCCTCAGAGGAGGGGAGTGTGAATGAGGATGTTGTTGTGACAAAGCCTTCCGGTATGACCTGCAGAGAGATACGTCGCAATTCTGCTGGCTGCATTAAACTGCGAGGAGAGTGTGAAAAATGTGTAGCGATCCAGGATATTGACTGCTCTGGGAAGAAGCCTCTGACTGGTCCTCTGAAGGAGGAGCTGGAGCAGGCCCTGGCCATGGCTGAGAAGTTCACCCAGGAGTACAACAAGCAGCTGAGGAGGTTTGAGGAGAAGATGTCTAACACATCCAGCCTGCTGGACCTGTTCAGCAAGCAGTTTGGCTGGGTGTCTGCCCTGGCCAACAATACCGACACCAAGGATGGAATCTTCAAGATTGAAACAGTCATGTCCAAGGACACGGAGGACCCTGAGAAACCAGGGGACACCAACGTGTCTGTGCAGCTGTTTAACACCCCTGCCATGACCTTCAGTGTGCCTGGAGACATTACCTGGAACGACCCGAAGTTCTCAGAGGTGGTGGCACAAGAGGCCCTTGACCGCTACAAACAGACAACAGTAGTGGTGAAGTAAACATCTGGAGGGCACCAATGTTCAGGACAATTTCACAAGTCAACTATAAGAGAAGAGAATAGAAGTGAAAGCTACGTCCTCATCATTGTTGATATTACAAGTTATTGTATTCCTATATGTTCTGTGTAACTAGAGTTCATCCTGCTATAAAAAACCTAACTAGAAATGGTGCACCAAGTCCTGTTGGCTTGAGGAGAAAGAAGAATATAGTACTAATGTTACCCTTTGAGTAAAACTGATCCTTGTTTCAAGTGAATTGCAACTTTTTATTTTGTACTTTGTCCTCgtctgtctgcatcatttccaatcccccctATTTTTTTTGTGAATATATATactggggcaaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaaagatgagaggcctgtaaattttcatcataggtacacttcaactatgtcagacaaaatga

Function

NR:

description
clusterin-1

GO:

id name namespace
GO:0008219 cell death biological_process

KEGG:

id description
K17252 CLU; clusterin

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124418.1 True 1891 mRNA 0.49 9 22473965 22478556

Neighbor

gene id symbol gene type direction distance location
LOC110529616 LOC106586086 coding upstream 48317 22419790 ~ 22433035 (+)
LOC110529615 topk coding upstream 64108 22406165 ~ 22409857 (+)
LOC110529613 LOC106571406 coding upstream 70940 22318493 ~ 22403025 (+)
LOC118965501 NA coding upstream 181702 22288286 ~ 22292263 (+)
gnpat LOC106571402 coding upstream 503172 21961001 ~ 21970793 (+)
LOC118965502 NA coding downstream 17889 22496445 ~ 22498272 (+)
LOC110531077 NA coding downstream 25316 22503872 ~ 22506362 (+)
LOC110529619 hdc coding downstream 28288 22506844 ~ 22512029 (+)
gje1 LOC106571413 coding downstream 326348 22804904 ~ 22809549 (+)
vta1 LOC106571414 coding downstream 331326 22809882 ~ 22857289 (+)
G685562 NA non-coding upstream 8066 22465698 ~ 22465899 (+)
G685539 NA non-coding upstream 32757 22440998 ~ 22441208 (+)
G685495 NA non-coding upstream 119535 22353532 ~ 22354430 (+)
G685575 NA non-coding downstream 35505 22514061 ~ 22514365 (+)
G685610 LOC106571411 non-coding downstream 96564 22575120 ~ 22577488 (+)
G686253 NA non-coding downstream 207243 22685799 ~ 22686047 (+)
G686292 NA non-coding downstream 232187 22710743 ~ 22710956 (+)
G686296 NA non-coding downstream 234970 22713526 ~ 22713788 (+)
G685469 NA other upstream 25892 22446771 ~ 22448073 (+)
G685311 NA other upstream 389741 22083874 ~ 22084224 (+)
G685215 NA other upstream 547609 21925117 ~ 21926356 (+)
LOC110529590 LOC106571388 other upstream 1049401 21406192 ~ 21424564 (+)
G685551 NA other downstream 1767 22480323 ~ 22482139 (+)
G686448 LOC106571417 other downstream 467945 22946501 ~ 22972836 (+)
LOC110529640 LOC106571431 other downstream 1005876 23484408 ~ 23524035 (+)
LOC110529210 ift172 other downstream 1505889 23961761 ~ 23991295 (+)
G688613 NA other downstream 2504173 24982729 ~ 24984826 (+)

Expression


Co-expression Network