LOC110529619 (hdc)


Basic Information

Item Value
gene id LOC110529619
gene name hdc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22506844 ~ 22512029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611978.2
CATGGAGGCAGGAGGAAAACAGAACAGCGCCTGACCGATCTACATTCAAAGCAGGAATCAAAACAAGAAACGGACACGCCTTCTTCGTAGGTTACCTTTGCTGTCACAACTGCAGAAATCTAGATGGTGATATAGCTGCAAAAACAGTACCACCAGCAATCAAGAAGAGAGAATCAGTTAATTtgaagtgggattcaaatggaaCCCGCAGAAATGTCAGACAGTCGATTATAGTTTGAAATTATTCATATCAGGATCAGTAAAATGCCCAACCAGAAAAGCAACAAGGGGAAGAGAAATAAACGCACTAATAGTAGTGGAGATGAGCAAGAAAATGGAGCCAGTGCTGCCGCAACAGTGGGAGCACCAGGGGTAACAACCTTATTGGGTGCTACAGCTGCACCGTTACACGAGCATACAAGTGCAGAAACCCCCTGTGCCACCCCTCTTGTGTGCAGTCTAGCCAGAGACATTGACCTTGAGAAGGATGACTATCAACGTGTAGTGTGCAACAGTGATAGCTGCCCCTATGGCAACTGGATGCACTTGCAGTGCTTCTACGAGTGGGAGAGCAGCATCCTGGTCCAGTTCAACTGCATTGGAAGGGCCCGCAGCTGGAATGAGAAGCAGTGCCGGCAGAACATGTGGACTAAGAAGGGATACGACCTGGCCTTCCGCTTCTGCTCCTGCCGCTGTGGCCAGGGCCACCTTAAGAAAGACACAAACTGGTACCAGGTGAAGCGCATGACAGATGTAAAGAAGAAGATCCCTCTGGAGAAGAGCCTGGGGAAGTTGAGCAGCCTAACTGGAGCTGGAGGGGGTGCATGTGGAGGTGGGTTGGATCTGCCTGATGATCCTAAGAGGGGCAAGTTACATGGGGGCAGTAAACTGGCTCACAGAGCAAGTCAGGAGTTGCCTCGCCGACAGTCAGTGGATCGGCAGAACTCTCAAGAGAGGGGACACGTAGGGCTGTTCTGTGCAAGCAGCCTGGGGCCCCGCTCACCCTCTGAGTCCCCGGGCCAGTCCCCTCCGTTAggcttctccttcttctccccgCCCGCCTTCGCAGGGCCCCGCAACTCCCGGCACCTGGGGGAGTTCCTGAAGAATGCAGTGCACATGGATAGCCACCGGAAGCACATGCTGGCAAGCGGCATGCTGGGTCGCGGAGGCCACCTGGATCACACCATCTTACCTCTGCCCAGACTCACCCTGGGGGACAACCCAGTGCAGTTCCTGCGAAGGCTGGACCTCACAGAGCTGCTGACCCACATTCCCAGACACAAGCTGAACACCTACCACGTACGTATGGAGGATGATGCCCAGGCGGGCCAGGGAGAGGACCTGAGGAGGTACATCCTGTCGGCTCTGAGCGCCAGCCACAGGAACATGGTCAACTGTGCCCTGTGCCACCGCACCCTGCCTGTCTTTGAGCAGTTCCCCCTGGTGGACGGGACCCTGTTCCTGAGCCCCGCTAGACATGATGAGATTGAGTACGATGTGCCGTGCCACCTGCAAGGGAGGCTGATGCACCTGTATGCAATCTGTGTCGACTGTCTGGAGGGAGTCCACAAAATTGTCTGTATCAAGTGCAAGTCCAGGTGGGATGGGAGCTGGCACCAGTTGGGGACAATGTACACCTATGATATACTGGCTGCGACGCCATGTTGTCAGGCCCGTCTGAACTGCAAGCACTGTGGTAAGCCAGTCATAGATGTCAGGGTGGGGATGCAGTACTTCTCAGAGTACAGCAACGTGCAGCAGTGCCCCCACTGTGGGAACCTCGACTACCACTTTGTCAAGCCATTCTCCTCCTTCAAAGTCTTGGAAGCTTATTGACAAATGTTGTGCATGTATGCTAGTGCTGTTTCtcttgttacatttttttttaacttagGCAACTTAATTTTGAGCCTTGAATAATTTTTTCTGGGATTCAGTTTTTGTTTTCTCTTTTTTTAATGTATAGAAAGAATATGACTCCACTAAAAAGTTCCAAGACAACATCTACATGATTTCAGAAAAAATTATATTCATAAGACCTTAAACGGTTTGGAGCTGTCTGGCACTTAAAAAGACGAGCAACACATATACTGTGACAAGTGAATGTATCTGTAGGTCAAATTGCATTTTTACAAAAAATCTCTaataaaggagagaaagaaatgtT
>XM_021611979.2
ATGGAGGCAGGAGGAAAACAGAACAGCGCCTGACCGATCTACATTCAAAGCAGGAATCAAAACAAGAAACGGACACGCCTTCTTCGTAGGTTACCTTTGCTGTCACAACTGCAGAAATCTAGATGGTGATATAGCTGCAAAAACAGTACCACCAGCAATCAAGAAGAGAGAATCAGTTAATTtgaagtgggattcaaatggaaCCCGCAGAAATGTCAGACAGTCGATTATAGTTTGAAATTATTCATATCAGGATCAGTAAAATGCCCAACCAGAAAAGCAACAAGGGGAAGAGAAATAAACGCACTAATAGTAGTGGAGATGAGCAAGAAAATGGAGCCAGTGCTGCCGCAACAGTGGGAGCACCAGGGGTAACAACCTTATTGGGTGCTACAGCTGCACCGTTACACGAGCATACAAGTGAAACCCCCTGTGCCACCCCTCTTGTGTGCAGTCTAGCCAGAGACATTGACCTTGAGAAGGATGACTATCAACGTGTAGTGTGCAACAGTGATAGCTGCCCCTATGGCAACTGGATGCACTTGCAGTGCTTCTACGAGTGGGAGAGCAGCATCCTGGTCCAGTTCAACTGCATTGGAAGGGCCCGCAGCTGGAATGAGAAGCAGTGCCGGCAGAACATGTGGACTAAGAAGGGATACGACCTGGCCTTCCGCTTCTGCTCCTGCCGCTGTGGCCAGGGCCACCTTAAGAAAGACACAAACTGGTACCAGGTGAAGCGCATGACAGATGTAAAGAAGAAGATCCCTCTGGAGAAGAGCCTGGGGAAGTTGAGCAGCCTAACTGGAGCTGGAGGGGGTGCATGTGGAGGTGGGTTGGATCTGCCTGATGATCCTAAGAGGGGCAAGTTACATGGGGGCAGTAAACTGGCTCACAGAGCAAGTCAGGAGTTGCCTCGCCGACAGTCAGTGGATCGGCAGAACTCTCAAGAGAGGGGACACGTAGGGCTGTTCTGTGCAAGCAGCCTGGGGCCCCGCTCACCCTCTGAGTCCCCGGGCCAGTCCCCTCCGTTAggcttctccttcttctccccgCCCGCCTTCGCAGGGCCCCGCAACTCCCGGCACCTGGGGGAGTTCCTGAAGAATGCAGTGCACATGGATAGCCACCGGAAGCACATGCTGGCAAGCGGCATGCTGGGTCGCGGAGGCCACCTGGATCACACCATCTTACCTCTGCCCAGACTCACCCTGGGGGACAACCCAGTGCAGTTCCTGCGAAGGCTGGACCTCACAGAGCTGCTGACCCACATTCCCAGACACAAGCTGAACACCTACCACGTACGTATGGAGGATGATGCCCAGGCGGGCCAGGGAGAGGACCTGAGGAGGTACATCCTGTCGGCTCTGAGCGCCAGCCACAGGAACATGGTCAACTGTGCCCTGTGCCACCGCACCCTGCCTGTCTTTGAGCAGTTCCCCCTGGTGGACGGGACCCTGTTCCTGAGCCCCGCTAGACATGATGAGATTGAGTACGATGTGCCGTGCCACCTGCAAGGGAGGCTGATGCACCTGTATGCAATCTGTGTCGACTGTCTGGAGGGAGTCCACAAAATTGTCTGTATCAAGTGCAAGTCCAGGTGGGATGGGAGCTGGCACCAGTTGGGGACAATGTACACCTATGATATACTGGCTGCGACGCCATGTTGTCAGGCCCGTCTGAACTGCAAGCACTGTGGTAAGCCAGTCATAGATGTCAGGGTGGGGATGCAGTACTTCTCAGAGTACAGCAACGTGCAGCAGTGCCCCCACTGTGGGAACCTCGACTACCACTTTGTCAAGCCATTCTCCTCCTTCAAAGTCTTGGAAGCTTATTGACAAATGTTGTGCATGTATGCTAGTGCTGTTTCtcttgttacatttttttttaacttagGCAACTTAATTTTGAGCCTTGAATAATTTTTTCTGGGATTCAGTTTTTGTTTTCTCTTTTTTTAATGTATAGAAAGAATATGACTCCACTAAAAAGTTCCAAGACAACATCTACATGATTTCAGAAAAAATTATATTCATAAGACCTTAAACGGTTTGGAGCTGTCTGGCACTTAAAAAGACGAGCAACACATATACTGTGACAAGTGAATGTATCTGTAGGTCAAATTGCATTTTTACAAAAAATCTCTaataaaggagagaaagaaatgtT
>XM_036985043.1
ATGCGTGACAAGTTATTGCAATGGATTTTATTGCATACGCACTAGACGGCAAGCTTACGTTGCTTCACATATCATTGTTGTCATCGACTGTACCTAACTCACGTGTTATTGCTTTATTGGCGACTAGAATTATACATTGGTAATTTAATGATGCGTTGACATGGAGCTCCATGCACTGCCATATCACGACGCACACATTCAGCCTGGTCTCTTAGACTAGAGTAACATAATAAACGTATATCCGGGAAACGTCAATGAGTACGTTAAGTTACCTTTGGTAACCGCCCTACATAAGACCGAATGTTTTTTTAGGCGGTAAACGAAAGTAAAGTGattggtcggggtggatggCAGAAACCCCCTGTGCCACCCCTCTTGTGTGCAGTCTAGCCAGAGACATTGACCTTGAGAAGGATGACTATCAACGTGTAGTGTGCAACAGTGATAGCTGCCCCTATGGCAACTGGATGCACTTGCAGTGCTTCTACGAGTGGGAGAGCAGCATCCTGGTCCAGTTCAACTGCATTGGAAGGGCCCGCAGCTGGAATGAGAAGCAGTGCCGGCAGAACATGTGGACTAAGAAGGGATACGACCTGGCCTTCCGCTTCTGCTCCTGCCGCTGTGGCCAGGGCCACCTTAAGAAAGACACAAACTGGTACCAGGTGAAGCGCATGACAGATGTAAAGAAGAAGATCCCTCTGGAGAAGAGCCTGGGGAAGTTGAGCAGCCTAACTGGAGCTGGAGGGGGTGCATGTGGAGGTGGGTTGGATCTGCCTGATGATCCTAAGAGGGGCAAGTTACATGGGGGCAGTAAACTGGCTCACAGAGCAAGTCAGGAGTTGCCTCGCCGACAGTCAGTGGATCGGCAGAACTCTCAAGAGAGGGGACACGTAGGGCTGTTCTGTGCAAGCAGCCTGGGGCCCCGCTCACCCTCTGAGTCCCCGGGCCAGTCCCCTCCGTTAggcttctccttcttctccccgCCCGCCTTCGCAGGGCCCCGCAACTCCCGGCACCTGGGGGAGTTCCTGAAGAATGCAGTGCACATGGATAGCCACCGGAAGCACATGCTGGCAAGCGGCATGCTGGGTCGCGGAGGCCACCTGGATCACACCATCTTACCTCTGCCCAGACTCACCCTGGGGGACAACCCAGTGCAGTTCCTGCGAAGGCTGGACCTCACAGAGCTGCTGACCCACATTCCCAGACACAAGCTGAACACCTACCACGTACGTATGGAGGATGATGCCCAGGCGGGCCAGGGAGAGGACCTGAGGAGGTACATCCTGTCGGCTCTGAGCGCCAGCCACAGGAACATGGTCAACTGTGCCCTGTGCCACCGCACCCTGCCTGTCTTTGAGCAGTTCCCCCTGGTGGACGGGACCCTGTTCCTGAGCCCCGCTAGACATGATGAGATTGAGTACGATGTGCCGTGCCACCTGCAAGGGAGGCTGATGCACCTGTATGCAATCTGTGTCGACTGTCTGGAGGGAGTCCACAAAATTGTCTGTATCAAGTGCAAGTCCAGGTGGGATGGGAGCTGGCACCAGTTGGGGACAATGTACACCTATGATATACTGGCTGCGACGCCATGTTGTCAGGCCCGTCTGAACTGCAAGCACTGTGGTAAGCCAGTCATAGATGTCAGGGTGGGGATGCAGTACTTCTCAGAGTACAGCAACGTGCAGCAGTGCCCCCACTGTGGGAACCTCGACTACCACTTTGTCAAGCCATTCTCCTCCTTCAAAGTCTTGGAAGCTTATTGACAAATGTTGTGCATGTATGCTAGTGCTGTTTCtcttgttacatttttttttaacttagGCAACTTAATTTTGAGCCTTGAATAATTTTTTCTGGGATTCAGTTTTTGTTTTCTCTTTTTTTAATGTATAGAAAGAATATGACTCCACTAAAAAGTTCCAAGACAACATCTACATGATTTCAGAAAAAATTATATTCATAAGACCTTAAACGGTTTGGAGCTGTCTGGCACTTAAAAAGACGAGCAACACATATACTGTGACAAGTGAATGTATCTGTAGGTCAAATTGCATTTTTACAAAAAATCTCTaataaaggagagaaagaaatgtT
>XM_036985044.1
ATGCGTGACAAGTTATTGCAATGGATTTTATTGCATACGCACTAGACGGCAAGCTTACGTTGCTTCACATATCATTGTTGTCATCGACTGTACCTAACTCACGTGTTATTGCTTTATTGGCGACTAGAATTATACATTGGTAATTTAATGATGCGTTGACATGGAGCTCCATGCACTGCCATATCACGACGCACACATTCAGCCTGGTCTCTTAGACTAGAGTAACATAATAAACGTATATCCGGGAAACGTCAATGAGTACGTTAAGTTACCTTTGGTAACCGCCCTACATAAGACCGAATGTTTTTTTAGGCGGTAAACGAAAGTAAAGTGattggtcggggtggatggAAACCCCCTGTGCCACCCCTCTTGTGTGCAGTCTAGCCAGAGACATTGACCTTGAGAAGGATGACTATCAACGTGTAGTGTGCAACAGTGATAGCTGCCCCTATGGCAACTGGATGCACTTGCAGTGCTTCTACGAGTGGGAGAGCAGCATCCTGGTCCAGTTCAACTGCATTGGAAGGGCCCGCAGCTGGAATGAGAAGCAGTGCCGGCAGAACATGTGGACTAAGAAGGGATACGACCTGGCCTTCCGCTTCTGCTCCTGCCGCTGTGGCCAGGGCCACCTTAAGAAAGACACAAACTGGTACCAGGTGAAGCGCATGACAGATGTAAAGAAGAAGATCCCTCTGGAGAAGAGCCTGGGGAAGTTGAGCAGCCTAACTGGAGCTGGAGGGGGTGCATGTGGAGGTGGGTTGGATCTGCCTGATGATCCTAAGAGGGGCAAGTTACATGGGGGCAGTAAACTGGCTCACAGAGCAAGTCAGGAGTTGCCTCGCCGACAGTCAGTGGATCGGCAGAACTCTCAAGAGAGGGGACACGTAGGGCTGTTCTGTGCAAGCAGCCTGGGGCCCCGCTCACCCTCTGAGTCCCCGGGCCAGTCCCCTCCGTTAggcttctccttcttctccccgCCCGCCTTCGCAGGGCCCCGCAACTCCCGGCACCTGGGGGAGTTCCTGAAGAATGCAGTGCACATGGATAGCCACCGGAAGCACATGCTGGCAAGCGGCATGCTGGGTCGCGGAGGCCACCTGGATCACACCATCTTACCTCTGCCCAGACTCACCCTGGGGGACAACCCAGTGCAGTTCCTGCGAAGGCTGGACCTCACAGAGCTGCTGACCCACATTCCCAGACACAAGCTGAACACCTACCACGTACGTATGGAGGATGATGCCCAGGCGGGCCAGGGAGAGGACCTGAGGAGGTACATCCTGTCGGCTCTGAGCGCCAGCCACAGGAACATGGTCAACTGTGCCCTGTGCCACCGCACCCTGCCTGTCTTTGAGCAGTTCCCCCTGGTGGACGGGACCCTGTTCCTGAGCCCCGCTAGACATGATGAGATTGAGTACGATGTGCCGTGCCACCTGCAAGGGAGGCTGATGCACCTGTATGCAATCTGTGTCGACTGTCTGGAGGGAGTCCACAAAATTGTCTGTATCAAGTGCAAGTCCAGGTGGGATGGGAGCTGGCACCAGTTGGGGACAATGTACACCTATGATATACTGGCTGCGACGCCATGTTGTCAGGCCCGTCTGAACTGCAAGCACTGTGGTAAGCCAGTCATAGATGTCAGGGTGGGGATGCAGTACTTCTCAGAGTACAGCAACGTGCAGCAGTGCCCCCACTGTGGGAACCTCGACTACCACTTTGTCAAGCCATTCTCCTCCTTCAAAGTCTTGGAAGCTTATTGACAAATGTTGTGCATGTATGCTAGTGCTGTTTCtcttgttacatttttttttaacttagGCAACTTAATTTTGAGCCTTGAATAATTTTTTCTGGGATTCAGTTTTTGTTTTCTCTTTTTTTAATGTATAGAAAGAATATGACTCCACTAAAAAGTTCCAAGACAACATCTACATGATTTCAGAAAAAATTATATTCATAAGACCTTAAACGGTTTGGAGCTGTCTGGCACTTAAAAAGACGAGCAACACATATACTGTGACAAGTGAATGTATCTGTAGGTCAAATTGCATTTTTACAAAAAATCTCTaataaaggagagaaagaaatgtT

Function

symbol description
hdc Predicted to enable histidine decarboxylase activity. Acts upstream of or within chemical synaptic transmission; nervous system development; and response to light stimulus. Predicted to be active in cytoplasm. Is expressed in brain; caudal hypothalamic zone; hypothalamus; and posterior recess. Human ortholog(s) of this gene implicated in Gilles de la Tourette syndrome; asthma; and rhinitis. Orthologous to human HDC (histidine decarboxylase).

NR:

description
headcase protein homolog isoform X1

GO: NA

KEGG:

id description
K23049 HECA, HDC; headcase protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611978.2 False 2170 mRNA 0.51 4 22506844 22512029
XM_021611979.2 False 2166 mRNA 0.51 4 22506845 22512029
XM_036985043.1 False 2097 mRNA 0.51 4 22507290 22512029
XM_036985044.1 True 2094 mRNA 0.50 4 22507290 22512029

Neighbor

gene id symbol gene type direction distance location
LOC110531077 NA coding upstream 482 22503872 ~ 22506362 (+)
LOC118965502 NA coding upstream 8572 22496445 ~ 22498272 (+)
LOC100136120 LOC100136120 coding upstream 28288 22473965 ~ 22478556 (+)
LOC110529616 LOC106586086 coding upstream 81196 22419790 ~ 22433035 (+)
LOC110529615 topk coding upstream 96987 22406165 ~ 22409857 (+)
gje1 LOC106571413 coding downstream 292875 22804904 ~ 22809549 (+)
vta1 LOC106571414 coding downstream 297853 22809882 ~ 22857289 (+)
adgrg6 LOC106571415 coding downstream 347985 22860014 ~ 22915654 (+)
aig1 LOC106571419 coding downstream 564355 23076384 ~ 23144537 (+)
pex3 pex3 coding downstream 639252 23151281 ~ 23155668 (+)
G685562 NA non-coding upstream 40945 22465698 ~ 22465899 (+)
G685539 NA non-coding upstream 65636 22440998 ~ 22441208 (+)
LOC110529613 LOC106571406 non-coding upstream 104127 22318493 ~ 22403025 (+)
G685495 NA non-coding upstream 152414 22353532 ~ 22354430 (+)
G685575 NA non-coding downstream 2032 22514061 ~ 22514365 (+)
G685610 LOC106571411 non-coding downstream 63091 22575120 ~ 22577488 (+)
G686253 NA non-coding downstream 173770 22685799 ~ 22686047 (+)
G686292 NA non-coding downstream 198714 22710743 ~ 22710956 (+)
G686296 NA non-coding downstream 201497 22713526 ~ 22713788 (+)
G685551 NA other upstream 24705 22480323 ~ 22482139 (+)
G685469 NA other upstream 58771 22446771 ~ 22448073 (+)
G685311 NA other upstream 422620 22083874 ~ 22084224 (+)
G685215 NA other upstream 580488 21925117 ~ 21926356 (+)
G686448 LOC106571417 other downstream 434472 22946501 ~ 22972836 (+)
LOC110529640 LOC106571431 other downstream 972403 23484408 ~ 23524035 (+)
LOC110529210 ift172 other downstream 1472416 23961761 ~ 23991295 (+)
G688613 NA other downstream 2470700 24982729 ~ 24984826 (+)
G688823 NA other downstream 2546924 25058953 ~ 25061450 (+)

Expression


Co-expression Network