txlnba (LOC100194672)


Basic Information

Item Value
gene id txlnba
gene name LOC100194672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22533156 ~ 22562329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611980.2
GCTGACAGCTTCTCCACTTGATGTGAGCAGAGTTGAGTTGCAGGAAGTTATTTTGAGGGGCTTGCCTGTCACAGCTGTTGCCTCAGTCACCAGAGTCCTGTTGGACCCTCTTCACTTTTCTCTTTCTATCCCCTGGACCTGCCACATCTGTGAGAATGGAGATCAACGTCCAGTCTGTTGCAGAGGTCATCCCAGCCCAGACCAGTGTGACTCCACCACCGTCCCCAGTCACAGCAGAGACCCCGGTCCCTCTACCCCAGGAGGGCCAGCACATGGACCCCATGGAGGAGTTTGGTCATCGGCTGGATGAAATTATCAACACCTATGGCTCCGCAGCCAGCCTGATAGAGAAACAGTGCATCATCCTGGAAACGGATAAGGTGGAAGAGGAGGCAAGCGGAGAGGAAGCTGATGAAGTCACAGCCGCCAAGAACACCAGCACGGGCAAGGATGCAAAGAAGTTGCTGAAAGGCTTAGGAAAGGAGGGCACGCTTCTAATGCAAAGTTTGAACAAGCTGTGCACGCCAGAAGAGAAACTGGATGCTCTACTCAAGAAGTATGCCGAACTGCTGGAGGAGCGTCGAGGGGAGCAGAAGCAGCTGAGGTTCCTTCAGAAGAAGCAGGGCCACATGGGGAAGGAGAGGGACCAGCTCCAGTACGAGCACAGCAGAGCCATCCTGGCCCACAGCAAACTGGAGGGCCTCTGCAGGGAACTCCAGAGGCACAACAAGACCCTCAAGgAGGAGACCCTTGCGCGTTGTCGTGAGGATGAGGAGAAGCGCAGAGAGATCACCACTCACTTCCAGAGCACGCTGACAGACATCCAGGCTCAGATCGAGCAGCACAGTAACCGCAACAACAAGCTGTGTTCGGAGAACACCAACCTGGCAGACAAACTCAAACACATCATCAGCCAGtatgagcagagagaggagAGCTTGGAGAAGATCTTCAAGCACCACGACCTGCAGCAGAAGCTGTCTGATACCAAACTGGAGCAAGCTAATGCACAGCTGCAGGAGGCAGAGGAGAAGCACAAGAGAGAAAAGGAATATCTGCTTAGGGAGGCAATTGACAAAACAAAGAAATGCTACACATTGAAGGAGCAAGAGTTGCAGTTGAAGAAAAAGCTTGCTCTGTACTCCCAGAAGTTTGAAGAGTTCCAGACTACGTTGTCTAAGAGCAACGATGTGTACGCCAGCTTCAAAAATGAAATGGAGAAGATGACAAAGAAGATGAAAAAACTTGATAAAGAGTCGAATGTTTGGAAGACCAGATTTGAGAGCACTAACAAGGCTCTCTCGGAGATGATTGAAGAGAGGACTGTGAAGGAGAATGAGTATGAGATGTTCGTCGTGAAGATTGACAAGCTGGAGAGGCTCTGCCGAGCACTCCAGGATGAGAGGAAGATCCTGTACTCCAAGATCAAAGGCATTCGCCAAACGCCTGACGCCACCGAGGGGACACCCAAGGACGAGACACAGGAGGTGGCCACTGAACCAGTCCACAGCCTCATGGACATAGTTGAGGAGCCAGAGATGACAGAGGAGATGGCCCGTCTGAGGGCTGAGCAGAACAGGCTGGCGGAGTTCGCAGCCTCCCTACTGGCCCCGTCTACAGGAGACGATGATGACGATGACTCTGACAGCGAGGAAGAGCCAGAGTCTACAGAACCTGCTGAGGCCCAGAAGATCCCTGAACCAACAAAGGCCCCAGTACAGGTAGTGGTAGAGGCACCAGCACATGCAGAGGAACCAGAACCAACATATGCAGATACACCAGCACAGACTCCAGCACAAGTAGAGGCACCAGCGCAGGCTCCAGCACAGGCTCCAGCACAAGTAGAGGCACCAGCACAGGCTCCAGCAGAGGCAGAGGCACCAGCACAAGTAGAGGATCCAGCAGAGGCTCCAGCACAGGCTCCAGCACAAGTAGAGGCACCAGCACAGGCTCCAACACAGGTAGAGGCTCCAGCACAAACAGAGGCACCAGCACAAGCTCCAGCACAGGCTCCAGCACAAGTAGAGGTACCAGCACAGGCTCCAGCACAGGTTCCAGCACAAGTAGAGGTACCAGCACAGGTGGAGGCACCAGCACAGGCAGAGATGGCTGCCCCAGTCCAGCCAGAGACCCCAAAACAGCCAGAGCCCTCCGCCAAGAAGCAGACGCCAAAAAAGAAGAATGCAATTAAGACTAGCTGAACCGACGAATGTGTCATTTTGTGAGCGTTAGaactatagtccctgtgcctcGTGTTATGGTTGAGTTGAGATATCCAATCCAACTTGGTTTGTCTATATACTGTTTTATCTGAAGTGGTGTGCAGTAGAAGTATGTTTAAGTCGTATACCagatgaggacagacagagatTTACTGCATAACCAAAGAATAGGTAGAAAGGTTATTCAGGACAATGCACCCTCAAAACTTTCCAATGCCGAATGTTGCCTTGCGCAAATAGCATCAGAACAGTCACTGTCTTTTTTGACTTTTTCCATCTGAACCCCTATAATGTAACTTCAATAAATATCTAATTGTAGACTATGTAGA
>XM_036985045.1
GCTGACAGCTTCTCCACTTGATGTGAGCAGAGTTGAGTTGCAGGAAGTTATTTTGAGGGGCTTGCCTGTCACAGCTGTTGCCTCAGTCACCAGAGTCCTGTTGGACCCTCTTCACTTTTCTCTTTCTATCCCCTGGACCTGCCACATCTGTGAGAATGGAGATCAACGTCCAGTCTGTTGCAGAGGTCATCCCAGCCCAGACCAGTGTGACTCCACCACCGTCCCCAGTCACAGCAGAGACCCCGGTCCCTCTACCCCAGGAGGGCCAGCACATGGACCCCATGGAGGAGTTTGGTCATCGGCTGGATGAAATTATCAACACCTATGGCTCCGCAGCCAGCCTGATAGAGAAACAGTGCATCATCCTGGAAACGGATAAGGTGGAAGAGGAGGCAAGCGGAGAGGAAGCTGATGAAGTCACAGCCGCCAAGAACACCAGCACGGGCAAGGATGCAAAGAAGTTGCTGAAAGGCTTAGGAAAGGAGGGCACGCTTCTAATGCAAAGTTTGAACAAGCTGTGCACGCCAGAAGAGAAACTGGATGCTCTACTCAAGAAGTATGCCGAACTGCTGGAGGAGCGTCGAGGGGAGCAGAAGCAGCTGAGGTTCCTTCAGAAGAAGCAGGGCCACATGGGGAAGGAGAGGGACCAGCTCCAGTACGAGCACAGCAGAGCCATCCTGGCCCACAGCAAACTGGAGGGCCTCTGCAGGGAACTCCAGAGGCACAACAAGACCCTCAAGgAGGAGACCCTTGCGCGTTGTCGTGAGGATGAGGAGAAGCGCAGAGAGATCACCACTCACTTCCAGAGCACGCTGACAGACATCCAGGCTCAGATCGAGCAGCACAGTAACCGCAACAACAAGCTGTGTTCGGAGAACACCAACCTGGCAGACAAACTCAAACACATCATCAGCCAGtatgagcagagagaggagAGCTTGGAGAAGATCTTCAAGCACCACGACCTGCAGCAGAAGCTGTCTGATACCAAACTGGAGCAAGCTAATGCACAGCTGCAGGAGGCAGAGGAGAAGCACAAGAGAGAAAAGGAATATTTACTGGTACATGCAGCTGAGTGGAAACTACAAGCTAAACTTCTGAGAGAGCAAGAGACTGTCATGCAGGCTCAGCTTGCTCTGTACTCCCAGAAGTTTGAAGAGTTCCAGACTACGTTGTCTAAGAGCAACGATGTGTACGCCAGCTTCAAAAATGAAATGGAGAAGATGACAAAGAAGATGAAAAAACTTGATAAAGAGTCGAATGTTTGGAAGACCAGATTTGAGAGCACTAACAAGGCTCTCTCGGAGATGATTGAAGAGAGGACTGTGAAGGAGAATGAGTATGAGATGTTCGTCGTGAAGATTGACAAGCTGGAGAGGCTCTGCCGAGCACTCCAGGATGAGAGGAAGATCCTGTACTCCAAGATCAAAGGCATTCGCCAAACGCCTGACGCCACCGAGGGGACACCCAAGGACGAGACACAGGAGGTGGCCACTGAACCAGTCCACAGCCTCATGGACATAGTTGAGGAGCCAGAGATGACAGAGGAGATGGCCCGTCTGAGGGCTGAGCAGAACAGGCTGGCGGAGTTCGCAGCCTCCCTACTGGCCCCGTCTACAGGAGACGATGATGACGATGACTCTGACAGCGAGGAAGAGCCAGAGTCTACAGAACCTGCTGAGGCCCAGAAGATCCCTGAACCAACAAAGGCCCCAGTACAGGTAGTGGTAGAGGCACCAGCACATGCAGAGGAACCAGAACCAACATATGCAGATACACCAGCACAGACTCCAGCACAAGTAGAGGCACCAGCGCAGGCTCCAGCACAGGCTCCAGCACAAGTAGAGGCACCAGCACAGGCTCCAGCAGAGGCAGAGGCACCAGCACAAGTAGAGGATCCAGCAGAGGCTCCAGCACAGGCTCCAGCACAAGTAGAGGCACCAGCACAGGCTCCAACACAGGTAGAGGCTCCAGCACAAACAGAGGCACCAGCACAAGCTCCAGCACAGGCTCCAGCACAAGTAGAGGTACCAGCACAGGCTCCAGCACAGGTTCCAGCACAAGTAGAGGTACCAGCACAGGTGGAGGCACCAGCACAGGCAGAGATGGCTGCCCCAGTCCAGCCAGAGACCCCAAAACAGCCAGAGCCCTCCGCCAAGAAGCAGACGCCAAAAAAGAAGAATGCAATTAAGACTAGCTGAACCGACGAATGTGTCATTTTGTGAGCGTTAGaactatagtccctgtgcctcGTGTTATGGTTGAGTTGAGATATCCAATCCAACTTGGTTTGTCTATATACTGTTTTATCTGAAGTGGTGTGCAGTAGAAGTATGTTTAAGTCGTATACCagatgaggacagacagagatTTACTGCATAACCAAAGAATAGGTAGAAAGGTTATTCAGGACAATGCACCCTCAAAACTTTCCAATGCCGAATGTTGCCTTGCGCAAATAGCATCAGAACAGTCACTGTCTTTTTTGACTTTTTCCATCTGAACCCCTATAATGTAACTTCAATAAATATCTAATTGTAGACTATGTAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611980.2 False 2551 mRNA 0.52 10 22533156 22562329
XM_036985045.1 True 2551 mRNA 0.52 10 22533156 22562329

Neighbor

gene id symbol gene type direction distance location
LOC110529618 LOC106571410 coding downstream 36738 22481780 ~ 22496418 (-)
LOC110529617 LOC106571409 coding downstream 73572 22446715 ~ 22459584 (-)
LOC110529614 LOC106571407 coding downstream 116752 22410004 ~ 22416404 (-)
LOC110529612 LOC106571405 coding downstream 217551 22310381 ~ 22315605 (-)
LOC110529611 LOC106571404 coding downstream 244993 22007750 ~ 22288163 (-)
cited2 LOC106571411 coding upstream 12791 22575120 ~ 22577512 (-)
nmbr LOC106571412 coding upstream 227533 22789862 ~ 22803661 (-)
si:ch211-202p1.5 LOC106571542 coding upstream 367362 22929691 ~ 22950071 (-)
hivep2a LOC106571417 coding upstream 407760 22970089 ~ 23066952 (-)
adat2 adat2 coding upstream 584129 23146458 ~ 23151249 (-)
G686153 NA non-coding downstream 8087 22524860 ~ 22525069 (-)
G686143 NA non-coding downstream 28222 22504662 ~ 22504934 (-)
G686139 NA non-coding downstream 31687 22501233 ~ 22501469 (-)
G686138 NA non-coding downstream 33649 22499183 ~ 22499507 (-)
G686106 topk non-coding downstream 123322 22406265 ~ 22409834 (-)
G686277 NA non-coding upstream 136833 22699162 ~ 22699380 (-)
G686293 NA non-coding upstream 149429 22711758 ~ 22712024 (-)
G686295 NA non-coding upstream 150838 22713167 ~ 22713476 (-)
G686297 NA non-coding upstream 151306 22713635 ~ 22713904 (-)
G686314 NA non-coding upstream 164604 22726933 ~ 22727238 (-)
G685953 NA other downstream 372114 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 608248 21920427 ~ 21926307 (-)
G684844 NA other downstream 1053953 21478766 ~ 21479203 (-)
G681659 NA other downstream 3741019 18791230 ~ 18792137 (-)
G679471 NA other downstream 5418628 17113543 ~ 17114528 (-)
LOC110529643 LOC106571435 other upstream 1054578 23614938 ~ 23659111 (-)
G687890 NA other upstream 1072980 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1192503 23754832 ~ 23756910 (-)
G688109 NA other upstream 1425770 23988099 ~ 23988854 (-)
G688366 NA other upstream 1862734 24425063 ~ 24425553 (-)

Expression


Co-expression Network