XLOC_025754 (pbx4)


Basic Information

Item Value
gene id XLOC_025754
gene name pbx4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 52999962 ~ 53076469 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050623
GGGGCAAGTCTTTCTACGACAGCACCGCGGCTTGGGAACAAACCAACTGTGTCGGGTCGGCTGGCATGGAGCTGAGCGTTTCCATTCTGAGTCGTTTCGAGCCGTCCGCCTAGAGCCGGGGCATTTCGCGCAAGGCCGGGGGCAGTTTTGCTGTTGGTCCCGGGGGTTTGTGGAGCCCGAGTGAATCTGTTGCTAGCAGCGCTCGAATGCTAGTTAGCCCCGCTGCTAAGCAGCTAGCCAACACTGCGAGTCAATTGTGTCGGAGATCTCGGAAATACGTTTAAAAGCGGTCACGTTCACCCGCCGCTCTCGCGATTCGTTTTGCTCGTTGAGTTTCGTCTTTTTCCCCAGCGGGAGGACGCTAATAAGCGGTCGCGCGAGTTTCTATTTCGATTTATTTCCAGCTAagactttttttcttctctctatTAGCTTGTTAGCCGCTCTGGTTGGTTTAGTCCAGCTTGTTAGTAGTGTCTGAGATTTCTACTGTAATAGCTGTCAGCGACAACAGCCCCTTGACGAAAAGCCAGTTTATGTGGACATGAATGATCGTGTTTGGTTGTTTCGAGTGGCGATAGTTTGAGATGCCGCGCATGGGATACTTCATGTTTCCAGGGACGCTCTTATTTTCTTGTTAGTCTGCTTTATGGGAGTGCTAGTGTGCAGCCTTTTGCTGTAGACAACACTGGTTTTTAGCAGGAACCGCACGCGGTGTTTCACCATCGGTCGCGCGTCGTTTGGATGTGGTTCAGCCTCACATTTCAGTCGCACTCtcgttgtttgttttctttttttatctagTGGCTCGTTCAGCTCCGCGTTTGTATCCGCGCTGTCGGTGGTACATGCTCACTGAGACAGCCCGCTGAAACACGCTTTCATTGGTTTGCGGCGGGGAAACGGAGAGATTCGGCTCAAAAGTATTATGGATGATCAGACCCGAATGCTGGCTAGCATGGGCGGACTCGGCGGACTCTCGCAAGCCGACGTGGGTGACCCCGATTCGGTTCGGAAGCAGCAGTCGCTCGGTCAACCGCAGCAAGACATAGGAGATATCCTCCAGCAGATCATGGCCATCACCGACGAGAGCCTCGACGAAGCCCAGGCGAGAAAACACGCACTGAACTGCCACAGGTTGAAGCCAGCTCTCTTCAGTGTTTTATGCGAGATCAAAGAAAAAACTGTGCTGAGCATCAGAGGCGTGCAGGAGGAGGATCCTCCAGATCCACAGATCATGCGTTTGGATAACATGCTGCTGGCTGAGGGCGTCTCTGGGCCAGAGAAGGGTGGAGGATCTGCGGCGGCAGCAGCAGCTGCAGCGGCAGCTGGAGGATCACCTAATGATGGCAGCATCGAACACTCCGACTACAGAGCCAAACTCGCACAGATCCGCCAGATCTACCACTCCGAGCTGGAGAAATACGAACAGGCCTGCAGTGAGTTCACCAATCACGTGATGAACCTGCTGAGGGAACAGTCCCGCACACGGCCCATCTCACCCAAAGAGATCGAGCGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGCGCTCCCGTTTCCTCGACgccagACGTAAGAGACGCAACTTCAATAAGCAGGCCACAGAGGTGCTGAACGAGTACTTCTACTCTCACCTCTCCAACCCGTACCCCAGTGAGGAAGCCAAGGAAGAGCTGGCCAAGAAGTGTGGGATCACTGTCTCTCAGGTCTCGAATTGGTTTGGCAACAAGAGAATTCGGTACAAGAAGAACATTGGTAAGTTCCAGGAGGAAGCAAACCTGTACGCCGTTAAAACAGCCGTGGACGCCGCCAATGTGTCGGCACAGGCCAGCCAGGCAAACTCTCCAGCAACACCCAACTCAGGTGGATATCCTGCACCGTGCTACACACCTGACGGCAGGCTATGAAGATCTGTCAGCAAGTCCTCTTTACACCCCACACCGTCTAGACGCTAATAACAGCTGGCAAGACAACACCAACCCTTCCTCCATCACCTCTCCACCAGGAGCACCCGGCAGCATCCACTCCGACACCTCCAgctaatctcacacacacacaatggtctTCCTCCGTCCTTGTCcacctctacacacacacacacacacacacactcgtctcGTTCTTTGAGGACGAGTCTGAAAACATGACTCGTCTCCTGGATCAAACCCCTCTACGATGGCGATTACGCAACTACTCCCTCCTCGCTTGTACCAAAGTGCTGTCAACGGTTGTTTCACTTTTCCGCACGTCGAAGAGCAACCTCAGACAACTGACCGCCCATCCAGTCTGCTTTTCACTATGATTTCCGCTACGTTGCGTTAAGCACAAATCCTGTCACTAAACACTGAGCTGGTGTTCGGGTGGAGAGGAGTTAAAGGTACGCTGGACCTATGAACACTTTGATTTCCAGTTCAGCTGAACGCAATGAGCGACCGCTCTCCGTTTTTAGTTTTCGCCACAGTATTCGTTTCCCTCGCCCGCAGCACGAAGATGCACCAGCCACCAAATAAAAAGACTTGATAAGAACTAGACCTCGCGTTGGTAAAACGGGGTCTGTCAGATGGACGGATAAGCTGGAGTATTGGTTTGGATCGGGGATCAGGGGGTGGgtgtttagaaatatttttaaagggaaagatgattaaaaaaaaagcgaTATTCCACTGTCTTCCATGCATGTAGGGTGTGTTGAGATGTTTTAGTGATTCCATTTAGCCTAACGTTAcgtttttcttttagttttttcctttcgtttttttaataaacaaaaaaaaaaaaactaaatatactaTAAAAGGAGAGGGTGGGAAAGTAACAGACCAAATAAACAAGTGAACAAGTAAAAGGACGTCATACTGCCCGGTGATCCAGTGCTTCGGGCTGGGGTTTGGTTTCTCTAGGGTTTCCGTGGTATTTTAAatagcacgttttttttttttcatctgtgaCACACACTGCGGCCTCTCGTCTTActggtgtgtgttgtgtgttttctaaGGGTTGGGTTGTCTCGTCACTCACTCGTGCTTTTGAACTGATTGTATTGTACGTGCAATTGAAAGCACCTGTTTCTTGGTAAAGCATGCTGTCTCTCTTTaatttgaccttttttatttttacgttttgttgttgttgcctaCAATTTCACTAAACTAAGGAACTCTGTTTTTTTGGTAATCAGTTAACATAGCCAAGCAACAAGGGCTTTTCTCCTGTCGAAATTTAACCAAAAATAAGCACTGGATGTGTTGTGATTTGAAACAGATGGACCACAGCTTGTagaggattttttttgttttcccgAAGTTACAGAGAACGAGTTGTccgtgtttttccttttttttttttttttttttttttttttttaaacgtttctCCGTTTAGTTTTCTCTTTATGGGCGGAAGCAGCAGGGCGTTTTTGATATATGAATGGAAATTCTATATATTACACAAAGGACTAAATAAGGTTGAAATGTAAATTGGGGTTTTGTTTATATATGTACACATGGAAAAACAAACTCTGAGGAGCTTTTCAAGCGTTTCTTCAAGATCATCACCGTGTCCTCTATAGATTAGTTCGAAACATTTCATATGGATATCTCCGACTAATGCTATTACTACACCaaaatttctttcttttcttttttctatcaGTCATCTATGGATGTCACTGTACAGATTGTGGAATGTTTCAGtgtatttttctctttttgtatgcttttgcttttttattatttttaaattctcGCTGGGGGGTTTTGGAGTAACATTTGTTAGTCTTTGTAATATTCATTTTAGCGTTTCAGTTACCTTTTATTTGGATCGGGAGTCTCGAGTGTTATTTTGTTTGTGTGGTTTTGTCAAAGCTGATGGCGTTTGTTTGAAGTGCCGTTAAACAAATTTTACAGGATCAACCGTCTTATTTGAGTATCTGCATAAGCTACGCTACAGACGATACGATACACTACATGTTGGACAATTTGTCACACAACTCTGGGATATTTTGGATTGTAATCGGAGTTTGAATCCGCAGCACCGACTCAAACGCCATCAGCATTTTATTtctcgattattattattattttagtagaaTTGTAGTACACGCTTCCTTCTGTATTTACCATTCTCTCCCTCCTCTCTACCTCTCCTCTCTCCATTTCACTTGTATATAAACCCCCCCATTTTCAGACTTGGTAGTCTGTATAAACTCCTTTTATACCTCAACTTTAGAACTGTTCtagtgagagagaaaaaaaagaaatatgagAAAATTGTAGTGTTCCTtattagaaaaacaaaaactaataaaataatctaGTGTGCTTT
>TCONS_00050624
GCTGAGGGAACAGTCCCGCACACGGCCCATCTCACCCAAAGAGATCGAGCGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGCGCTCCCGTTTCCTCGACgccagACGTAAGAGACGCAACTTCAATAAGCAGGCCACAGAGGTGCTGAACGAGTACTTCTACTCTCACCTCTCCAACCCGTACCCCAGTGAGGAAGCCAAGGAAGAGCTGGCCAAGAAGTGTGGGATCACTGTCTCTCAGGTCTCGAATTGGTTTGGCAACAAGAGAATTCGGTACAAGAAGAACATTGGTGGATATCCTGCACCGTGCTACACACCTGACGGCAGGCTATGAAGATCTGTCAGCAAGTCCTCTTTACACCCCACACCGTCTAGACGCTAATAACAGCTGGCAAGACAACACCAACCCTTCCTCCATCACCTCTCCACCAGGAGCACCCGGCAGCATCCACTCCGACACCTCCAgctaatctcacacacacacaatggtctTCCTCCGTCCTTGTCcacctctacacacacacacacacacacacactcgtctcGTTCTTTGAGGACGAGTCTGAAAACATGACTCGTCTCCTGGATCAAACCCCTCTACGATGGCGATTACGCAACTACTCCCTCCTCGCTTGTACCAAAGTGCTGTCAACGGTTGTTTCACTTTTCCGCACGTCGAAGAGCAACCTCAGACAACTGACCGCCCATCCAGTCTGCTTTTCACTATGATTTCCGCTACGTTGCGTTAAGCACAAATCCTGTCACTAAACACTGAG

Function

symbol description
pbx4 Enables DNA binding activity and DNA-binding transcription factor activity. Involved in nervous system development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within animal organ development; neuron development; and regulation of histone modification. Located in nucleus. Orthologous to human PBX4 (PBX homeobox 4).

GO:

id name namespace
GO:0003342 proepicardium development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001764 neuron migration biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0031016 pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0035066 positive regulation of histone acetylation biological_process
GO:0031060 regulation of histone methylation biological_process
GO:0031061 negative regulation of histone methylation biological_process
GO:0003232 bulbus arteriosus development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0003007 heart morphogenesis biological_process
GO:0048666 neuron development biological_process
GO:0007411 axon guidance biological_process
GO:0001654 eye development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0030901 midbrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-000201-18 Enables DNA binding activity and DNA-binding transcription factor activity. Involved in nervous system development and positive regulation of transcription by RNA polymerase II. Acts upstream of or within animal organ development; neuron development; and regulation of histone modification. Located in nucleus. Orthologous to human PBX4 (PBX homeobox 4).

Ensembl:

ensembl_id ENSDARG00000052150

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050623 False 4379 mRNA 0.46 8 52999962 53076469
TCONS_00050624 True 827 mRNA 0.53 5 53052769 53074492

Neighbor

gene id symbol gene type direction distance location
XLOC_025753 dsn1 coding upstream 19913 52953489 ~ 52980049 (+)
XLOC_025752 atp13a1 coding upstream 47936 52899801 ~ 52952026 (+)
XLOC_025750 NA coding upstream 116538 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 coding upstream 170956 52828912 ~ 52829006 (+)
XLOC_025749 gmip coding upstream 198660 52737565 ~ 52801302 (+)
XLOC_025755 brd4 coding downstream 39703 53116172 ~ 53224280 (+)
XLOC_025756 pet100 coding downstream 152215 53228684 ~ 53231344 (+)
XLOC_025757 stxbp2 coding downstream 164093 53240562 ~ 53274285 (+)
XLOC_025758 xab2 coding downstream 240571 53317040 ~ 53350547 (+)
XLOC_025759 camsap3 coding downstream 275549 53352018 ~ 53449437 (+)
XLOC_025429 BX649540.1 misc upstream 22750926 30248739 ~ 30249036 (+)
XLOC_025746 BX511096.1 non-coding upstream 379787 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 607757 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 610923 52377578 ~ 52389039 (+)
XLOC_025761 NA non-coding downstream 450496 53526965 ~ 53652401 (+)
XLOC_025764 CU633748.1 non-coding downstream 991054 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 1034920 54111389 ~ 54111972 (+)
XLOC_025766 NA non-coding downstream 1194234 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 1207298 54283767 ~ 54284185 (+)

Expression


Co-expression Network