vta1 (LOC106571414)


Basic Information

Item Value
gene id vta1
gene name LOC106571414
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22809882 ~ 22857289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611986.2
CTAAACGTATTGAACACGAAAGCGGAAGAATTCTGCGCAAGGATGAGCATTGTTGTTGAGACCCAGCTAGTTAGCAAGCCACATTTCCATTAATGTTGACTAATCTGCCATAGTTAGCTAGTGTATTTACATTATTAGAGATGGCGCTCCCACCACAGCTAAAAGCCATTCAACACTATCTAAGAACCGCACAGGAACATGAGAAGAGGGATCCTGTCGTGGCTTACTACTGTCGGCTTTATGCCATGCAGACGGGAATGAAACTGGACAGCAAAACCCCAGAATGTCGGAAGTTTCTTGTGCAACTGATGGATCAGTTAGAAACGATGAAGAAGGAGCTGACTGACAATGACTCAATCTCCCAGGAAGTTGTCGGCAATGCCCACATCGAAAACTATGCCTTAAAAATGTTCCTCTACGCTGACAACGAGGATCGATCTGGACGATTCCACAAGAATATGATTAAGTCCTTCTATACATCTAGCCTTTTGTTAGATGTCCTGTCAGTTTTCGGCGAGTTATCGGAGGAGAACATCCAGCACAGGAAGTATGCGAGATGGAAGGCCACTTACATCCACAACTGTCTGAAGAGCGGTGAAACCCCACAGGCTGGCCCTGATGGCTATGAGGAGGAAACGTATGATGAGGAGTATGGTGCTGAGGGTGGAGGGGGACCGTCGTACCAGTCCTCCCAACCTGCTCAGCCCCAGTCTCCACCCCATTCCCAGCCCGGCTTTGGGGATCCAGACCAGGGGCCAGGGTCCATGGGGGGTCCCCCCTACCCTCAGGGTCCGGGGTCCATGGGGGGTTCCCCCTACCCCCCCACCAACTACAACAACATCCACATCCCTCCTGGAGCCCACtgtccagctaacacacctgcaGGAGAGCCCGTTAAACCAGTGCCTGTTCCCCGAAGCATTCCAGCAGTCGACCCCTCACTGCTGAGTGCCACTCAGGAAGGTGACGTGCGCCTCACGCCAGAGGACTACACCAGGGCTCAGAAGTACTGCAAGTACGCTGGCAGCGCCCTGCAGTATGAAGACGTGGGCACGGCGGTGCAAAATCTGCAGAAGGCCCTCAACTTACTGACCACTGGAAAAGAATGAGACCCATTGTCCCTGGGTGTCACTGTATTGCTGATCTGGTCCAGAAGAGACCATTAGCCTCTAGTCTACGGCATGCGTCTGAAGAGAGCAATTCTGTCCCAAGCCTTCAACATCACTGTAAACAACAATGACATCTGTGTCTCCATATTGGACTCCTGTTGTGTAGCTTCCAACATGGCTGTCCATGACTAGAGTGAAGCGCTCAATAAAGACTTCCTGAGCCTGTATATTAAAACGGTGCATCCTTCCTCTATTAGCACAGTATCCACCTTATTAGTTTCCACTAGCAACTAACTGACTGTTTTGATAACACACATCCCCTCCTTATGCATGTATGTTTTGGGGACATGCTCAGCGTTTGCAGTTCATAATACTTTAAGACTACACAGTTTCTCTCGTTAAACTTAATTTATAGGCCAATGCTTCAAAAGATTATTATCAGGGGACATTATTGATCTGCCCTTTACTGTGTTTTCAAATCAGTATCTATTTATCTCCTTTTCTTTGGTGAAAGACTGTCCTTTCTGCATCAacacaatttaaataaatgttttaaagtgATTTATTAATGCTTGGTGCTCTGTTTGTACTGATGCTGTCTGCTTTAGTACACAGAGCTGTACAAACAAAACTGTCCAAGCAAGAGGAAGACTTGTTCATGTTTACTTTGTGTGATGGCTTCTTGGGGAGGGCGCAGTCAGAGAGGGGACATTTGGGGCCAGTTTCCCCAGACgtagattaagcctagtcctggactaaaaaacgATTTTAATGGAGAGTCTTCATTGTGCATGTTTTTTATTCTAGGActaaacttaatctgtgtccaggaaaccgccTCATAGAGAACTAATTCCAAGGGTACGGTAATGTCACTATAGTTGAAAGCGCTTCCCTTACTTTAACACTAAACTTGTAATTTTGTATGTAGTCAACTTTGACTGAGCAGTTGATCAGTCCATCCTCAAATATGCAAAAGTTCCTTAGTGTGTTTTATGTTTCTGATTTCTTTAATTTTTCATTTAAACTcccttgttttgttttttacattttctagTCAATGTGTACTTAATGTAAATTAAGGACTCATTTGACCATTATTAAAACAAATCAATTGAAGTGTTTAGGTCATTGTtcattatttaatacatttccaTAAGGATTTTGAATTGGAAAGTAATTAAGCATGCCAGTGCTCCACCGTAGAGACAGCAACAGTCCCAGTTGATGGGTTATTTGAATAAATATATCCAGAACGTG

Function

NR:

description
vacuolar protein sorting-associated protein VTA1 homolog

GO: NA

KEGG:

id description
K12199 VTA1, LIP5; vacuolar protein sorting-associated protein VTA1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611986.2 True 2369 mRNA 0.45 8 22809882 22857289

Neighbor

gene id symbol gene type direction distance location
gje1 LOC106571413 coding upstream 333 22804904 ~ 22809549 (+)
LOC110529619 hdc coding upstream 297853 22506844 ~ 22512029 (+)
LOC110531077 NA coding upstream 303520 22503872 ~ 22506362 (+)
LOC118965502 NA coding upstream 311610 22496445 ~ 22498272 (+)
LOC100136120 LOC100136120 coding upstream 331326 22473965 ~ 22478556 (+)
adgrg6 LOC106571415 coding downstream 2725 22860014 ~ 22915654 (+)
aig1 LOC106571419 coding downstream 219095 23076384 ~ 23144537 (+)
pex3 pex3 coding downstream 293992 23151281 ~ 23155668 (+)
atf3 atf3 coding downstream 320349 23177638 ~ 23181382 (+)
tatdn3 tatdn3 coding downstream 344955 23202244 ~ 23208093 (+)
G686378 NA non-coding upstream 10197 22798189 ~ 22799685 (+)
G686334 NA non-coding upstream 66826 22742855 ~ 22743056 (+)
G686308 NA non-coding upstream 86867 22722734 ~ 22723015 (+)
G686298 NA non-coding upstream 95018 22714520 ~ 22714864 (+)
G686296 NA non-coding upstream 96094 22713526 ~ 22713788 (+)
G686432 NA non-coding downstream 65991 22923280 ~ 22923520 (+)
G686438 NA non-coding downstream 73464 22930753 ~ 22931260 (+)
G686444 NA non-coding downstream 79883 22937172 ~ 22937372 (+)
G686446 NA non-coding downstream 82961 22940250 ~ 22940510 (+)
G685551 NA other upstream 327743 22480323 ~ 22482139 (+)
G685469 NA other upstream 361809 22446771 ~ 22448073 (+)
LOC110529616 LOC106586086 other upstream 376847 22419790 ~ 22433035 (+)
G685311 NA other upstream 725658 22083874 ~ 22084224 (+)
G685215 NA other upstream 883526 21925117 ~ 21926356 (+)
G686448 LOC106571417 other downstream 89212 22946501 ~ 22972836 (+)
LOC110529640 LOC106571431 other downstream 627143 23484408 ~ 23524035 (+)
LOC110529210 ift172 other downstream 1127156 23961761 ~ 23991295 (+)
G688613 NA other downstream 2125440 24982729 ~ 24984826 (+)
G688823 NA other downstream 2201664 25058953 ~ 25061450 (+)

Expression


Co-expression Network