batf3 (LOC106571544)


Basic Information

Item Value
gene id batf3
gene name LOC106571544
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23192564 ~ 23198250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614354.2
gcttgatgggttttgcgactgcacttgaagaaactttaaaagttcttgaaatgttccgtattgactgaccttagtAATTGTGGACTGTTGATGAACCCTATCTGGtctaaaatgtaaattaaatgtaTGACACaagaatatattatatataacaaACCTACATCTATTTGCAACAATTCAAGTAGTATCATACAGGTACAGTAAACGTATAGGATATTTTCCGCTTGTCCTAAATCAGCTTTTTAGAGCGCACTTTATTCTGTTGCTGGTTGAACACTCAAGGGCATCTGACGCTTTTTAGCACGTGACTTAAAATAAATATTGAAAAGAAGCGGCATGTGCAGTTTGAACAAGTGAAACTGTTTGTCTCGCATACGCCCGGTCTCACTTGTACATACCTTGGATCTTGCTATCTGAAATAAAATTCGAGGAGGACTTGTTTTGACGTTTTGTATTTTACTAATCTATCAATGCTTTGTTATCGCATCTGTGATGTCTGACAGCGATATTTCTGGCAGCTTTCTACACAGCAAGAATCAAAACATGTTATTACTTGAAATATGTGAGCTGCAGAGCtctggtgatgatggtgatgaagacAGGAGGCTAAAAAGAAGGGAAAAGAACAGGGTGGCAGCGAAGAACAGCCGAAAAAAGCAGACACAAAGAGCAGATGAGCTGCATGAGGCATATGAGTGTCTGGAGCAGAAGAACAGACAGCTGAAGAAGGATGTGCAGTTTCTGTCTGAGGAGCAGAGGCGTCTAACGGAGGCCCTCAAGGCCCATGAGCCTCTCTGTCCCATCATGCACTGTGTTGCCAACCTGGGGTCAGGGACGTTGGGACCCAGGGATGTAGGGGTCCCCTCCTATCTGCCCAGATAGCCAACATACCATGCACGGACCACAGAGACAAACCAACGCGGGAGACTTGTAAACAGAGTTAACAGGTCAGATTATATGTCCTCATCTGTCCTTTTTATTCTCGGCGTCaattgtttttgtacagtttGAATCAAGTTGTAATTTAATAATTATAGGCTTAGGTAATGAGCTTTGTTTCAGATGTTCAAGTTGCTTTTCCTGTTTAAATGTTTCGTATAATACATTGAACATAAATTGCATATCCCTTTCCCAATGAGACCATTTCCCTTTGCTTCTGATAAATGTGGTTACCCCACCTCTTATCACGTGTGTTTTGGTTAACCAAACTGGTTTACCAGTACCTGGGCTTGACCATGTGGGAACTTACTTATACTTTACCAGAAAAAAAGAAACCATTTAAAGGTTTTTGGTTTCTGGTTTCTTAGTCCCTAATCTAAAACATTTAATACACTGGCTATTACCAATGGATTCATGCAATTCAATGCttaatttataaaataaaataatcaaaTCACTTAATCCAACTATAATATGTACagttttattattattgtttgttAGCTCATGTTATGACATTGTTATAGAGTGTACCCTCTCTTCCCTATAATGTGGGTAAATACTCACTAACCTCATTACGTCTTCGTCTCATAactttaaaaaattaaataagtTTGAAGCAAGCCATTATCATTCACTAACTCAATAAAAGGGGGAACATTTTGGGAATTCTTGTCCCCATCAATGATCTACAGCATCTTGATGACATGACTGCAGGCTTCTCTAAAATGTTATTATGAATGGATGGATACATTCACAGTAGTAATTGGCAAGGCTTCTACTAAATGCAGGCTGACCACTGAGAAATGTGAAAGACTCTTCAGCCACACAGACAGTTCATTTCATACCAAAGGATTTATAGACTTCTGCATTCTGCATTTGAGGGGGATTGTGGTGATTATAATAAAGCCTTTTGTGTGGATCGCTTCTTCATACCGGTATGCACTTCTTCTTAGTTATTTTCTCTTCGAACTTTCTCTTCTCACTTTCAAATGAGCACAGACTGCTTGGACTTCCACCACACAACACAGATGATATTACTTTCAGGCCAGGAGATTTTAGGGCATAATGAGGTATATCATTAGTATATTAGTATACACATTCATATTTGATTTTTCTTTAAGAAATAAAGTTTAATGTTTTCCCCACACCagatacaaacatacacatacgAACAACAACTTACTGTACAGACGCCCACAAACAATGACTACATCTCATCTGCCCAGACCcgcatgctcacacccccatccctagtgcctggatTATTGCCACGTGGCCTTCAATTGTACCAATTCGTTTTTCTTTCCATGCTATTTCAGTATGTCAATGATAAATCATTATGTTCGTGATGGCGGATTGATTGAGTTCCACGTTTTTAGTATACGGtttttcaagatgagtgatgagaagagaatcgtccagcccattgggtatctcactacactcccatatgccatgtcttgaaacatgcagacagacagatgaaatgTACGTTTACAGTGTAATACttcttctgacagccaactttttTAGCTCCACTCATAACTTTGGACTTTATAGCATTCCCAaaaagcatggattattgagtcatagTTCATTTTACACTcaagacatgactctgccgttgtgctgtagaatCTGTGATTTTTGTGTCTTTTATTGTCACGGCATTCATCGGAAGAAGTAGAGGAAtcgtcagaccaaaatgcagcggggtacgtgttcatctttaatatactgaactgaacactaaatacaaaatagCAATAGGAATAACCGAAAACTGTCCTGCAAggtgaaaacactaaacagaaaataaccacccacaactaacagtggggaaa

Function

NR:

description
basic leucine zipper transcriptional factor ATF-like 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09034 BATF; ATF-like basic leucine zipper transcriptional factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614354.2 True 2786 mRNA 0.39 3 23192564 23198250

Neighbor

gene id symbol gene type direction distance location
adat2 adat2 coding downstream 41315 23146458 ~ 23151249 (-)
hivep2a LOC106571417 coding downstream 125612 22970089 ~ 23066952 (-)
si:ch211-202p1.5 LOC106571542 coding downstream 242493 22929691 ~ 22950071 (-)
nmbr LOC106571412 coding downstream 388903 22789862 ~ 22803661 (-)
cited2 LOC106571411 coding downstream 615052 22575120 ~ 22577512 (-)
nsl1 nsl1 coding upstream 1261 23199511 ~ 23202233 (-)
angel2 angel2 coding upstream 55337 23253587 ~ 23259122 (-)
galnt14 LOC106571428 coding upstream 61938 23260188 ~ 23365791 (-)
LOC110529641 LOC106571433 coding upstream 329380 23527630 ~ 23582982 (-)
LOC110529643 LOC106571435 coding upstream 416688 23614938 ~ 23659111 (-)
G687044 NA non-coding downstream 3346 23189015 ~ 23189218 (-)
G687041 NA non-coding downstream 6173 23186158 ~ 23186391 (-)
G687034 NA non-coding downstream 18248 23173971 ~ 23174316 (-)
G687031 NA non-coding downstream 27439 23164770 ~ 23165125 (-)
G687017 NA non-coding downstream 34955 23157198 ~ 23157609 (-)
G687024 NA non-coding upstream 9622 23207872 ~ 23208815 (-)
G687075 NA non-coding upstream 47306 23245556 ~ 23249740 (-)
G687029 NA non-coding upstream 77570 23275820 ~ 23277349 (-)
G687121 NA non-coding upstream 148951 23347201 ~ 23347874 (-)
G687137 NA non-coding upstream 170104 23368354 ~ 23369103 (-)
G685953 NA other downstream 1031522 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 1267656 21920427 ~ 21926307 (-)
G684844 NA other downstream 1713361 21478766 ~ 21479203 (-)
G681659 NA other downstream 4400427 18791230 ~ 18792137 (-)
G679471 NA other downstream 6078036 17113543 ~ 17114528 (-)
G687890 NA other upstream 437059 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 556582 23754832 ~ 23756910 (-)
G688109 NA other upstream 789849 23988099 ~ 23988854 (-)
G688366 NA other upstream 1226813 24425063 ~ 24425553 (-)

Expression


Co-expression Network