nsl1 (nsl1)


Basic Information

Item Value
gene id nsl1
gene name nsl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23199511 ~ 23202233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612008.2
AGAACCACACATTTAATTTCCGGTTCCGGTCATTGCAGAATCATTTCAAACATTTGGCGCAAAAGATGGAGATCTGcttgaaagaagaggaagaatatAGGGTGAAGTTTACGTCGAAAAAAAATTTGGTCGAACAAATTAAGAAATACAAAGAACTACTGAAGAAGGTATTGAATGGCCAACCTCAGCTATCCGAGGAAGCCAAGCAACTATTACAGGAAGAGTTGCTGGCGAACTTCGAGACTGCTGTTCAAGAAAACGTGTTGATCAATAATCAGACGTGGGAGGAGGCTCCTGATGAAGAGGCTCAAGGCACAATAGGACATCAATGTAAAGATTATTCAGTGAGGGAGGAGGAACTTGGTGTCATCGAAGATGAATGCAGTGCACTTGACGACCTGCTGGATGAGAACATTGTGGGAACTTCTCGGAAACGACGTAAAGGTCCTAAAGAGATTCTCCCCTATGTCGTACGCTCACTAAAGGCGGAGCGTAAACTCATGGGAATGTATGAAGAAGTAGTGAAGCCACAAGAAATGGGAAAGGACCCAGTACAAGACACCATCATGACCACCTTATTGGATGCTGCACCTCGTATGTTTAAGCAAGCCAGCGCAGTAATGAAGTCTCTCCAGGTAGTGCAGCAGAGGGCCGAGGGCCTGGGACAGGTGCTGAACATGTGTCCCACAGCGGAGTCCCAGGAGGTGTTCAGGGAGGTGATGGGCAGCAGGCCCAATGGAGAGGAAAAGACAGCTAGTAGGACCAGACCACCCATTAAGAGAGCCATGGAGCAAACAGAGCTCAGAAACAACTATGCTCCTGGTCTAAAGAGGCCAGCCATTTGTAACAGCAATGACAAACTTGAGTGAAATATATGCCACATAAATGCTTCCTGATCATGGAACATGTACTCTTATTTGCGATTGGAATGATGCAATACTGTAGTACTCCCCACAGTGATAAGGCCTATGTTTGTAGCTGTCTGTGATACAATACTGCCCTCACATGATGAATAATGGGAAATGCACCCAATAGTAGTGTACATTGtttttatactgtatatttaaatGGCTTTAgaaggaaaaatatatattttagcttGGGTGTTCTTTTTTTCCCTTTGCCGTTTGGCATTTGTCACAGTTGAAAACGCACAGGTTGTAGGCTTATGTGAATAAAGGCTACTTAAACAAGCTGTAACAGCCAggtttaaaggtccaatgcagctgttttattttttttatctcaatatcaaataattacTGGGTAACAATGCAGTACCTTAGTgttattgttttcaattaaaatattaggactgtc
>XM_021612009.2
CTTTATTCCTAGAACCACACATTTAATTTCCGGTTCCGGTCATTGCAGAATCATTTCAAACATTTGGCGCAAAAGATGGAGATCTGcttgaaagaagaggaagaatatAGGGTGAAGTTTACGTCGAAAAAAAATTTGGTCGAACAAATTAAGAAATACAAAGAACTACTGAAGAAGGTATTGAATGGCCAACCTCAGCTATCCGAGGAAGCCAAGCAACTATTACAGGAAGAGTTGCTGGCGAACTTCGAGACTGCTGTTCAAGAAAACGTGTTGATCAATAATCAGACGTGGGAGGAGGCTCCTGATGAAGAGGAAGATGAATGCAGTGCACTTGACGACCTGCTGGATGAGAACATTGTGGGAACTTCTCGGAAACGACGTAAAGGTCCTAAAGAGATTCTCCCCTATGTCGTACGCTCACTAAAGGCGGAGCGTAAACTCATGGGAATGTATGAAGAAGTAGTGAAGCCACAAGAAATGGGAAAGGACCCAGTACAAGACACCATCATGACCACCTTATTGGATGCTGCACCTCGTATGTTTAAGCAAGCCAGCGCAGTAATGAAGTCTCTCCAGGTAGTGCAGCAGAGGGCCGAGGGCCTGGGACAGGTGCTGAACATGTGTCCCACAGCGGAGTCCCAGGAGGTGTTCAGGGAGGTGATGGGCAGCAGGCCCAATGGAGAGGAAAAGACAGCTAGTAGGACCAGACCACCCATTAAGAGAGCCATGGAGCAAACAGAGCTCAGAAACAACTATGCTCCTGGTCTAAAGAGGCCAGCCATTTGTAACAGCAATGACAAACTTGAGTGAAATATATGCCACATAAATGCTTCCTGATCATG

Function

symbol description
nsl1 Predicted to be involved in mitotic sister chromatid segregation. Predicted to be located in kinetochore. Predicted to be part of MIS12/MIND type complex. Orthologous to human NSL1 (NSL1 component of MIS12 kinetochore complex).

NR:

description
kinetochore-associated protein NSL1 homolog isoform X2

GO: NA

KEGG:

id description
K11545 NSL1, MIS14, DC8; kinetochore-associated protein NSL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612008.2 False 1320 mRNA 0.43 7 23199511 23202223
XM_021612009.2 True 845 mRNA 0.46 6 23199930 23202233

Neighbor

gene id symbol gene type direction distance location
batf3 LOC106571544 coding downstream 1261 23192564 ~ 23198250 (-)
adat2 adat2 coding downstream 48262 23146458 ~ 23151249 (-)
hivep2a LOC106571417 coding downstream 132559 22970089 ~ 23066952 (-)
si:ch211-202p1.5 LOC106571542 coding downstream 249440 22929691 ~ 22950071 (-)
nmbr LOC106571412 coding downstream 395850 22789862 ~ 22803661 (-)
angel2 angel2 coding upstream 51354 23253587 ~ 23259122 (-)
galnt14 LOC106571428 coding upstream 57955 23260188 ~ 23365791 (-)
LOC110529641 LOC106571433 coding upstream 325397 23527630 ~ 23582982 (-)
LOC110529643 LOC106571435 coding upstream 412705 23614938 ~ 23659111 (-)
LOC110529644 NA coding upstream 476598 23678831 ~ 23682862 (-)
G687044 NA non-coding downstream 10293 23189015 ~ 23189218 (-)
G687041 NA non-coding downstream 13120 23186158 ~ 23186391 (-)
G687034 NA non-coding downstream 25195 23173971 ~ 23174316 (-)
G687031 NA non-coding downstream 34386 23164770 ~ 23165125 (-)
G687017 NA non-coding downstream 41902 23157198 ~ 23157609 (-)
G687024 NA non-coding upstream 5639 23207872 ~ 23208815 (-)
G687075 NA non-coding upstream 43323 23245556 ~ 23249740 (-)
G687029 NA non-coding upstream 73587 23275820 ~ 23277349 (-)
G687121 NA non-coding upstream 144968 23347201 ~ 23347874 (-)
G687137 NA non-coding upstream 166121 23368354 ~ 23369103 (-)
G685953 NA other downstream 1038469 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 1274603 21920427 ~ 21926307 (-)
G684844 NA other downstream 1720308 21478766 ~ 21479203 (-)
G681659 NA other downstream 4407374 18791230 ~ 18792137 (-)
G679471 NA other downstream 6084983 17113543 ~ 17114528 (-)
G687890 NA other upstream 433076 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 552599 23754832 ~ 23756910 (-)
G688109 NA other upstream 785866 23988099 ~ 23988854 (-)
G688366 NA other upstream 1222830 24425063 ~ 24425553 (-)

Expression


Co-expression Network