XLOC_025756 (pet100)


Basic Information

Item Value
gene id XLOC_025756
gene name pet100
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53228684 ~ 53231344 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050627
GTATTCCGAAcctttattttgacatattctggaACAGGAAGTGCCTGAATGTGTGATTGTCAAGCTGTAGGACATGGGGGTTAAAATTGAGATTTTTAGGATGATGGTGTATTTGTCGTTTCCAGTGGCGATGTTTTGGATTTCAAACCAAGCCGAGTATTTTGAGGAATATATCGTGAAGAGAAAGAGGGAGATCTTCCCGCCTGATGAGAAACTGCAGAGGCAAGAATTGGAGGATTTTAAGCAGCGTATGAGGATCCGCAGAGAGCAGAAGATGCTGAAACAGATGAACATGTCCTCTGAGGAATAATTTATATACATATCATtataattgtataaaaataaaactacatcTTCCTCATTTTAGCGCCACAAAGGATTGACTTTCGGATTAAGGCTTTATGTGCAACTTTGAAATGCCTTTCCTAAAGCGTTAGATAAGAAGTTCAGAAATTGGTGGggaaatgtgtatatttttgtaaatatataactTGTCTTTGAACTTGATTTGACTTTATTTGTGTGTAACATGACATTCTTAATGGCTGAAAAAACATTGGTCTGTTGCtgttgattttttaattattattaaaaataatgtaaaatcttGTATT

Function

symbol description
pet100 Predicted to enable unfolded protein binding activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human PET100 (PET100 cytochrome c oxidase chaperone).

GO:

id name namespace
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-131121-608 Predicted to enable unfolded protein binding activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human PET100 (PET100 cytochrome c oxidase chaperone).

Ensembl:

ensembl_id ENSDARG00000098017

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050627 True 614 mRNA 0.35 4 53228684 53231344

Neighbor

gene id symbol gene type direction distance location
XLOC_025755 brd4 coding upstream 4404 53116172 ~ 53224280 (+)
XLOC_025754 pbx4 coding upstream 152215 52999962 ~ 53076469 (+)
XLOC_025753 dsn1 coding upstream 248635 52953489 ~ 52980049 (+)
XLOC_025752 atp13a1 coding upstream 276658 52899801 ~ 52952026 (+)
XLOC_025750 NA coding upstream 345260 52806272 ~ 52883424 (+)
XLOC_025757 stxbp2 coding downstream 9218 53240562 ~ 53274285 (+)
XLOC_025758 xab2 coding downstream 85696 53317040 ~ 53350547 (+)
XLOC_025759 camsap3 coding downstream 120674 53352018 ~ 53449437 (+)
XLOC_025760 zmp:0000001048 coding downstream 280592 53511936 ~ 53522208 (+)
XLOC_025761 NA coding downstream 295621 53526965 ~ 53652401 (+)
XLOC_025429 BX649540.1 misc upstream 22979648 30248739 ~ 30249036 (+)
XLOC_025751 CT573476.2 non-coding upstream 399678 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 608509 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 836479 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 839645 52377578 ~ 52389039 (+)
XLOC_025764 CU633748.1 non-coding downstream 836179 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 880045 54111389 ~ 54111972 (+)
XLOC_025766 NA non-coding downstream 1039359 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 1052423 54283767 ~ 54284185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G332488 NA non-coding CI01000113 null 1253733 ~ 1254272 (-)