LOC110531080 (LOC106571440)


Basic Information

Item Value
gene id LOC110531080
gene name LOC106571440
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23791999 ~ 23805391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614355.2
ACAATCACAATTCTAAACTTTCTATTCCTCTCAATTTGCTAGGTTAGCCGCCGAAATATCTTGCACTTTTTTGACGTCGACACACGCTGTCGATACCTTTTTAAGGGCTTGACCTTTTCCAGTCAGTTGTGACTTGTAGCTGCACCAAAGCAAACGCCTGCACATTCACAGCCAAGTTCACCACTTGGGCTATAGGCTACTGCAGCAGTGGAATTGAGAGTAGGCTACTAGTTTGTATCGGGTCCGATATTTGCAACTGGTGATACTTATTGCCATGAAGGATTTAATTAGTTTTATTAGCACAGTTGGTATGGCTTGGACGACTTTTCTCAGTGCCATTTAAGATACTAATCGCCGTGAAACTCCACATCTTCAGATTCTGCTTAATTTGTTAGATACAACGGGTGACAAGACACGAACATGGATACCACTGTGAATTCAGGAAGAAATTCCGAGAAATCTCACCTCGTGCACGAGATGAATGCCAAAATGTATTCACTGAAAAGTTCCTCTTCAGACTCCAAAGAAGACTATCCCAACTTCCCACTTGAGAAGGAAGATGTGGCTGGTGCCATTAAGCTGAAGCAGCCTGTTGGCGCCCATTGCCACGATAACAAAGCAGTGAGTGAGGAGAACCATGACGCGCTGCTGGCTAAGAAGAAGCTGTACATCGCCTCCATTGTGTGCCTCATCTTCATGATCGGAGAGATCATAGGTGGCTACCTGGCCCACAGTTTGGCTATTATGACAGATGCAGCTCACCTCCTGACTGACTTCGGCAGCATGATGGTCAGCCTGTTCTCCCTGTGGATCTCCTCTAGACCACCCACCAAAACCATGACCTTTGGATGGCACCGCTCAGAGATCCTAGGAGCGCTGGTGTCAGTGATGTCCATCTGGATAGTGACTGGGGTTCTGGTTTACCTGGCCATTGAGAGGATAGTCAAGAACGACTTTGAAATCAACAGTCAAGCGATGCTCATCACCTCCGGTTGTGCCGTCATAGTAAACATCATcATGGCGTACatcctccaccactccaccaccttCCATGCCCAGAGCTCAGGCTACCAGCAAATAGACGAGAACGGGCAGAGCCCTTTGGGTCACAGCCACTCCCATGTGGGCCACTCCCACACCCTGCTGGGTCATGGCCATGGCAACACCAGTGTGAGAGCAGCCTTCATTCACGTGTTGGGAGATCTCCTACAGAGTGTTGGGGTCCTAGTGGCTGCCATCGTCATCTTCTACAGGCCTGAATACAAAGTAGCAGATCCCATTTGTACCTTCCTCTTCTCTGTGTTTGTCCTTGGGACCACCATCACCATACTCAGGGATGTTGTCAGGATACTCATGGAAGGGGCTCCTAAGGGAATAGAGTTTAACTCGGTGAAGGAGGTGTTGCTGTCTCTGAAGATGGTGAAGTCTATGCACAACCTGCGCCTGTGGGCCTTGACCGCGGGACAGACCCTGGTCTCCGTCCATGTAGCCATCGAGGAGAATGCTGATCCCCAGAGTGTCCTTAAGGAGGCTACAGAGATCCTTCAAACCAAGTTTGGTTTCTACAGAATCACCATCCAGGTGGAGCCCTACTCTGATGACATGGCCTACTGCACACACTGCCAGGATCCCATGGActaacagcagtggaggctgctgaggggaggatggctgaTAATAATATCTGGAACAAAGCAAATggcatggcatcaaacacatggaaaccatgtttgatgtatttgataccagtccactcattccgctccagtcattaccatgagcccgtcctccccaattaaggtgccaccaacctcctgtgactaAGACTCACAACTAccatggagacaggagagagctgTCATTTTGAAAGGAAGTGGGTACTGTATACATACaaaagcatacagtgccttcagaaggtattcataccccttgacttattccacattgttgtCACATCCTGGATTCAAAATGGaataaatatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaaagtcaatgacacttctgtgaaatcaaa

Function

NR:

description
PREDICTED: zinc transporter 2-like

GO: NA

KEGG:

id description
K14690 SLC30A3, ZNT3; solute carrier family 30 (zinc transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614355.2 True 2054 mRNA 0.48 8 23791999 23805391

Neighbor

gene id symbol gene type direction distance location
LOC110529645 NA coding downstream 59843 23694461 ~ 23732156 (-)
LOC110529644 NA coding downstream 109137 23678831 ~ 23682862 (-)
LOC110529643 LOC106571435 coding downstream 132888 23614938 ~ 23659111 (-)
LOC110529641 LOC106571433 coding downstream 209017 23527630 ~ 23582982 (-)
galnt14 LOC106571428 coding downstream 426208 23260188 ~ 23365791 (-)
trim54 LOC106571441 coding upstream 77679 23883070 ~ 23908520 (-)
LOC110529650 LOC106571443 coding upstream 105110 23910501 ~ 23928808 (-)
cpsaseii LOC106571444 coding upstream 123545 23928936 ~ 23952518 (-)
LOC118965656 NA coding upstream 140385 23945776 ~ 23945903 (-)
si:dkey-221h15.4 LOC106571445 coding upstream 147319 23952710 ~ 23955758 (-)
G687973 NA non-coding downstream 45278 23746445 ~ 23746721 (-)
G687971 NA non-coding downstream 46881 23744895 ~ 23745118 (-)
G687970 NA non-coding downstream 47225 23744573 ~ 23744774 (-)
G687969 NA non-coding downstream 48256 23743320 ~ 23743743 (-)
G687966 NA non-coding downstream 54093 23737706 ~ 23737906 (-)
G688024 NA non-coding upstream 17514 23822905 ~ 23823457 (-)
G688038 NA non-coding upstream 37777 23843168 ~ 24094930 (-)
G688167 NA non-coding upstream 278669 24084060 ~ 24116642 (-)
G688191 NA non-coding upstream 312149 24117540 ~ 24117785 (-)
G688192 NA non-coding upstream 312822 24118213 ~ 24118420 (-)
G687979 LOC106571438 other downstream 35089 23754832 ~ 23756910 (-)
G687890 NA other downstream 154591 23635309 ~ 23637408 (-)
G685953 NA other downstream 1630957 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 1867091 21920427 ~ 21926307 (-)
G688109 NA other upstream 182708 23988099 ~ 23988854 (-)
G688366 NA other upstream 619672 24425063 ~ 24425553 (-)
LOC110529658 LOC106571450 other upstream 633574 24438965 ~ 24446940 (-)
G688480 LOC106571453 other upstream 824163 24629554 ~ 24631049 (-)
G688537 NA other upstream 875576 24680967 ~ 24681426 (-)

Expression


Co-expression Network