XLOC_025757 (stxbp2)


Basic Information

Item Value
gene id XLOC_025757
gene name stxbp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53240562 ~ 53274285 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050628
CAACAGGGAAGTGTCAAGATGGCCCCGAGTGGACTAAAAGCGATCGCGAACGAAAAAATCCTCAGTGGAGTCATCAAGAGTGTGAAGAAAGATGGGGACTGGAAGgTGCTCATCGTTGATCATATCAGTATGCGGATTCTGTCCTCGTGCTGTAAAATGTCTGACATCATGGCAGAGGGTGTTACAATTGTGGAGGACATCAGCAAACGAAGGGAGCCGATCCCCAGTCTGGAAGCCATTTACCTCATCTCACCTGTGCCAAAGTCAGTTCATGCTCTGATTGCGGATTTCAGAGAGACAGCCTTCACTTACAAAGCAGCACACGTCTTCTTTACCGACACTTGTCCTGATGGGCTTTTTGCTGAGATTGGCAGGTCGAGGGTTGCAAAGGTCATCAAAACTCTCAAGGAGATCAATGTGGCTTTCATACCGTATGAGTCTCAGGTCTTCACTCTGGACAACCCCAGTTCCTTCCACGCTTTCTACAGCCCAACTCAGACTAATCTAGATGACAAGAGCAGAATGATGGAGGCCATGGCTGAGCAGATCGCCACTCTCTGTGACACGCTGACGGAGTATCCAGCCATCCGATACCGCCTGGGGCCAAAGGAGAATTTCAGCCTGGCTGAGATGGTGATGGATCGTCTGAATGCACACAAAGCAGACAATCCCAGAATGGGAGAGGGCACAGATAAAGCTCGCTCTCAGCTGCTAATAGTGGACCGTGGGTATGATCCCGTCTCTCCAATTCTTCACGAGCTCACCTTCCAGGCGATGGCCTACGACCTGCTAGACATTGAACAAGACATTTACAGGTATCAGACAGCAGGGATCGGTGAGGCTCGAGATAAAGAGGTGTTGCTGGATGAGGATGATGAGCTGTGGGTTCAGCTGCGACACATGCACATAGCAGACGTCACCAAGAAGGTGACAGAGCTGCTGCGGGTCTTTTGTGACAGCAAGAGGATGAACACAGACAAGGCCAACATCAAAGATCTGTCTCAGATGCTGAAGAAGATGCCGCAGTACCAGAAAGAGCTGAgcctgTACTCCACTCATCTGAACCTGGCTGATGCTTGCATGAAGAAGTTCAAGAACACGTTAGACAAGCTGTGTGAGGTGGAGCAGGATTTGGCCATGGGATCAGATGCCCAGGGCGAACCGCTTAAAGATGCTATGAAGAGTATCGTCCCTGTTCTTCTCAACACAGAGATCAAAGACTATGATAAAATCCGCATCATACTGCTGTACATCTTCCACAAGAAGAAGGGCATCGGTGAAGAGAACCTCACAAAGCTCATCCAGCATGCAAACGTTCAGCAGGACAAGAACATCATCACCAACCTGCAGCATCTAGGCTGCCCTATCATCACTGGGGGTGCTAATTCTGGAAAGAGTCTGCCTGACAGGAAAGAGCGCACAGAATCTACATATCAGCTCTCCCGCTGGATACCCGTCCTGAAAGATGTGATGGAGAATATCATTGATGACAAATGTGACAGGAAGCAGTGGCCATTCCTGTCTGAGCCTGCACCCATCACCACCACCGCAACTACAGTCAGCAGCGCACGGTTTGGACACTGGCACAAGAACAAGTCTGCCACAGAGTACCGCAGTGGCCCTCGCCTCATCATCTTCGTGATTGGAGGAGTCACACATTCAGAGATGCGCTGCGCTTATGAAGTGACCCGCGCCACTGAGGGCAAATGGGAGGTTCTGATCGGATCGTCTCACATTATTACTCCAACCAGCTTTCTGAATGACCTGAAGGAGCTGGACGCGTCTGCAACAAGTGTTGCACAGTAACCCCCTCTCACAGATTCATCCCACATGTGAACATTAAGAGTTTCTCCAATGACCAGtgaaaaaaagacacattttaaaTCTGCCTCACTGATTATTTGCTGTCTTTTAAAGTAATGATTTTAATTACGCAAATTAACTGgtggtatatgtgtgtgtatatatattcatgACCTATGCTTAATTTAAAAGAACAATTATATGTAAGACCACATATGTGAACGTAATTAGAATTCTGAGGCTGGAAATTGTCCACATAAATGGATTAAATCTCGCTCCGCTCCATTGAAATGCCAGTCCTGTCAAGTTTTGATGTGATTTAAGGACTTCTTTAGACCTGCACACTGGAACGAATGATCACACTGGATTTAGAGATATTATCTATCGCCTTGTGATTTATCATAaagaatatacatttttatcTTACTTTAAAACTGCCAATGTGAAAACTTAAGGTATTTAAGATGAGGCTGTTTGTAGTAGAGCTGTCCAATTTTGATTTCCAGTCAGGTTTGGTTATATCTGCCTCTCTTGGTGAAGGGATGAAATGTGTCATctcagtatatatacagtatgtcttttttgtttgttatgcTCTGAACTTGTGCACTTTTTTTCTTATACTGTTACTGTATCACATATAGATGGATGTGGTTCACTGGGTCTATTTGTCTTTTGTTTCTGTTAACATTAATTCTAAATAAAATTTGCTTATACCTCATTCTA

Function

symbol description
stxbp2 Predicted to enable syntaxin-1 binding activity and syntaxin-3 binding activity. Predicted to be involved in intracellular protein transport; neurotransmitter secretion; and vesicle docking involved in exocytosis. Predicted to act upstream of or within protein transport. Predicted to be active in plasma membrane and secretory granule. Is expressed in brain; epidermis; liver; periderm; and sensory system. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 5. Orthologous to human STXBP2 (syntaxin binding protein 2).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030141 secretory granule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0030348 syntaxin-3 binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2482 Predicted to enable syntaxin-1 binding activity and syntaxin-3 binding activity. Predicted to be involved in intracellular protein transport; neurotransmitter secretion; and vesicle docking involved in exocytosis. Predicted to act upstream of or within protein transport. Predicted to be active in plasma membrane and secretory granule. Is expressed in brain; epidermis; liver; periderm; and sensory system. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 5. Orthologous to human STXBP2 (syntaxin binding protein 2).

Ensembl:

ensembl_id ENSDARG00000007603

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050628 True 2529 mRNA 0.46 19 53240562 53274285

Neighbor

gene id symbol gene type direction distance location
XLOC_025756 pet100 coding upstream 9218 53228684 ~ 53231344 (+)
XLOC_025755 brd4 coding upstream 16282 53116172 ~ 53224280 (+)
XLOC_025754 pbx4 coding upstream 164093 52999962 ~ 53076469 (+)
XLOC_025753 dsn1 coding upstream 260513 52953489 ~ 52980049 (+)
XLOC_025752 atp13a1 coding upstream 288536 52899801 ~ 52952026 (+)
XLOC_025758 xab2 coding downstream 42755 53317040 ~ 53350547 (+)
XLOC_025759 camsap3 coding downstream 77733 53352018 ~ 53449437 (+)
XLOC_025760 zmp:0000001048 coding downstream 237651 53511936 ~ 53522208 (+)
XLOC_025761 NA coding downstream 252680 53526965 ~ 53652401 (+)
XLOC_025762 col5a3a coding downstream 498971 53773256 ~ 53919463 (+)
XLOC_025429 BX649540.1 misc upstream 22991526 30248739 ~ 30249036 (+)
XLOC_025750 NA non-coding upstream 357138 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding upstream 411556 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 620387 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 848357 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 851523 52377578 ~ 52389039 (+)
XLOC_025764 CU633748.1 non-coding downstream 793238 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 837104 54111389 ~ 54111972 (+)
XLOC_025766 NA non-coding downstream 996418 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 1009482 54283767 ~ 54284185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_01208541_01221483 STXBP2 coding CI01000113 null 1207889 ~ 1222083 (-)