trim54 (LOC106571441)


Basic Information

Item Value
gene id trim54
gene name LOC106571441
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23883070 ~ 23908520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612041.2
TGACCCATAACAAACAAAGGCTAAATATATTTCCATGGCAGGGAGGGTCTTTacgctggaggagagacaggcagagagatcGAGGGATAGAGTGATAGAGGGACAGAAAGATCGAGAAGAGAGGCACAGGAAGGTTCCCAGTTCTTTCTTCTTGAAGGCTTCATAGAGCGTCAGACCTTCAGAGAGCTTCACAGTGTCAGTTCCAGACCAGTGTTTGGGATGAACTTTGCACTGGGCTACAAACCTGGGCAACTCGGGGAGTCTAGCACCATGGATAACTTGGAGAAGCAGCTCATCTGCCCCATCTGCCTGGAGATGTTCACCAAGCCTGTGGTCATACTGCCCTGCCAGCACAACCTCTGCAGGAAGTGTGCCAATGACGTCTTCCAGgcTGCCAACCCCCTGTGGCAGTCTCGGGGGTCCAAGTCCATGTCCACAAGGGGTCGTTTCCGCTGCCCATCATGTCGTCATGAGGCAGTGTTGGACCGCCATGGTGTGTATGGCCTACAGAGGAACCTGCTAGTAGAGAACATCATAGACATCTACAAACAAGAAGAGTCCAGCAGGCCCCTGAATCCCACCAaggtggagcagcagcagctgatgTGTGAGGAGCATGACGAGGAGAAGATCAACATCTACTGCCTGAGCTGTGAGACGCCCACCTGCTCAATGTGTAAAGTGTTTGGCCAGCACAAGGACTGTGAGGTGGCCCCCCTGCAGAATGTCTACAAGAGACAGAAGACGGAGCTGAGTGACGGCATCGCCATCTTGGTGGCTGGGAACGACCGTATCAAGGCCCTCCTCTCTCAGATGGAGGAGACCTGCAGGTCCATCCAGGAGAACGGCCGTCGTCAGAAGCAGAGTCTGTGTGATAAGTTTGACGGGCTGTATGCCatcctggaggagaggaagaaggagttGGTGGGTATGATCAGCCGCCAGCAGGATGACAAGCTGGACTACATCCGCTCCCTCATGCGTCGCCACGGAGACCACCTGGAGGGAGCCGTCAAGCTGGTGGAGACAGCCATCCAGTCCATGGAGGAACCACAGATGGCCGTGTTCCTACAGAGAATCAAGGATATATTTAAAAAGATCGGCACCACTGCCAAGGTGTCCAGTATGGAATGTCCAGAGCCGGGCTACGAGAGCATGGCCCATCTTGTCATCAACACAGCGAATGTGGCAGACATGCTGAGGACCATTGACTTCATCACAGTTAGGGCCTCAGGTTTCCAGGAAAAGGACGGGGAGGATGGTTATGATCTGGGTTTTTCCAGTCAAGAAAGGACTACTTAGAGGGTTTATGGTAATCCCCTGCGCACATCCATCCAGAGTATTGATGTTTGCCTTTACCATTCGGCTGTCAACTGGTTTTGCTGTCCACAGTATTTACATTGAGTGAATTACAGATCTACAATAGAGAATaaagctcaaacatcacacagtTGAAGGCCTCCCTCGCCACCCACATCAGATATATGTACAAAAGCCTGTGTATTATGTGTACATTTGATAAGCTAAGTATAATCCACTGAAATGTATCCCACTGTTGGTTTGAATTGTGCATGTTGTGAAGTAGGAAGAATATTGTTGTTTTTCCTCACCTAACACTCCTTCTAGTGCTTGTGATTATCCTGCTACTTCCTCTTCAACAGACTTTACTTTGACAAGAGTTCCACAAGTGCCTTGAAGAAAAAAGTATGACTAATATTGTAGAGACCGAAGCAACTGTAAGCTGCACTTCTAAAAGGTTATGAGGAGAACTGAATGCTCCGATGGTATAGTATATGCACTTTTTAGTCTCAGTTTACATCATTTTATAGAAATA
>XM_021612040.2
CTGACCCATAACAAACAAAGGCTAAATATATTTCCATGGCAGGGAGGGTCTTTacgctggaggagagacaggcagagagatcGAGGGATAGAGTGATAGAGGGACAGAAAGATCGAGAAGAGAGGCACAGGAAGGTTCCCAGTTCTTTCTTCTTGAAGGCTTCATAGAGCGTCAGACCTTCAGAGAGCTTCACAGTGTCAGTTCCAGACCAGTGTTTGGGATGAACTTTGCACTGGGCTACAAACCTGGGCAACTCGGGGAGTCTAGCACCATGGATAACTTGGAGAAGCAGCTCATCTGCCCCATCTGCCTGGAGATGTTCACCAAGCCTGTGGTCATACTGCCCTGCCAGCACAACCTCTGCAGGAAGTGTGCCAATGACGTCTTCCAGgcTGCCAACCCCCTGTGGCAGTCTCGGGGGTCCAAGTCCATGTCCACAAGGGGTCGTTTCCGCTGCCCATCATGTCGTCATGAGGCAGTGTTGGACCGCCATGGTGTGTATGGCCTACAGAGGAACCTGCTAGTAGAGAACATCATAGACATCTACAAACAAGAAGAGTCCAGCAGGCCCCTGAATCCCACCAaggtggagcagcagcagctgatgTGTGAGGAGCATGACGAGGAGAAGATCAACATCTACTGCCTGAGCTGTGAGACGCCCACCTGCTCAATGTGTAAAGTGTTTGGCCAGCACAAGGACTGTGAGGTGGCCCCCCTGCAGAATGTCTACAAGAGACAGAAGACGGAGCTGAGTGACGGCATCGCCATCTTGGTGGCTGGGAACGACCGTATCAAGGCCCTCCTCTCTCAGATGGAGGAGACCTGCAGGTCCATCCAGGAGAACGGCCGTCGTCAGAAGCAGAGTCTGTGTGATAAGTTTGACGGGCTGTATGCCatcctggaggagaggaagaaggagttGGTGGGTATGATCAGCCGCCAGCAGGATGACAAGCTGGACTACATCCGCTCCCTCATGCGTCGCCACGGAGACCACCTGGAGGGAGCCGTCAAGCTGGTGGAGACAGCCATCCAGTCCATGGAGGAACCACAGATGGCCGTGTTCCTACAGAGAATCAAGGATATATTTAAAAAGATCGGCACCACTGCCAAGGTGTCCAGTATGGAATGTCCAGAGCCGGGCTACGAGAGCATGGCCCATCTTGTCATCAACACAGCGAATGTGGCAGACATGCTGAGGACCATTGACTTCATCACAGTTAGGGCCTCAGGTTTCCAGGAAAAGGACGGGGAGGATGGTTATGATCTGGGTGAGGACTTAGCATCGCTGGCAACAGGGGATGTAGACTATGGGCGATGCTAGTTGAAAAGGGTCAAAGAAAGAAAAACCATGCTATGCTGCTCTCGTGCTTTATTCCCTTACACACAGTTACAACATTTAGGCTTCAAACACAAAGGCTGTTaaatatagttatactgtatattgttcCTTCTGACATCAGTCTTAAACATATCTGTAAAGGCTGAAATCAAGTGTTTAATATCTAGAATATGGATGGATCACTTGTCTTGTTTACCCCACAGCCAACTCATTTCAAATGGAGAGACCAGGCATTCTTTCTCCTCTCAGTGATAAAGCAATTCCATATTTCCCTTGCTACCTCCAAAAGTGTAACGATCGTAGGGCTAGGGGACCCTTCGGCCTCACAGCGTCACTGTAACATGCCAGAGATGAATTAACTAACTAGAAGTACACATTTGACTGGCCTGCTATTTATACATGATTAAAGTTTCAACTAGAAACTCTCAA

Function

NR:

description
tripartite motif-containing protein 54-like isoform X1

GO: NA

KEGG:

id description
K10653 TRIM54, MURF3; tripartite motif-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612041.2 False 1834 mRNA 0.49 9 23883070 23908519
XM_021612040.2 True 1774 mRNA 0.50 8 23885864 23908520

Neighbor

gene id symbol gene type direction distance location
LOC110531080 LOC106571440 coding downstream 77679 23791999 ~ 23805391 (-)
LOC110529645 NA coding downstream 150914 23694461 ~ 23732156 (-)
LOC110529644 NA coding downstream 200208 23678831 ~ 23682862 (-)
LOC110529643 LOC106571435 coding downstream 223959 23614938 ~ 23659111 (-)
LOC110529641 LOC106571433 coding downstream 300088 23527630 ~ 23582982 (-)
LOC110529650 LOC106571443 coding upstream 1981 23910501 ~ 23928808 (-)
cpsaseii LOC106571444 coding upstream 20416 23928936 ~ 23952518 (-)
LOC118965656 NA coding upstream 37256 23945776 ~ 23945903 (-)
si:dkey-221h15.4 LOC106571445 coding upstream 44190 23952710 ~ 23955758 (-)
LOC110529653 rcan2 coding upstream 217238 24125758 ~ 24243880 (-)
G688000 NA non-coding downstream 39966 23789230 ~ 23843104 (-)
G688024 NA non-coding downstream 59613 23822905 ~ 23823457 (-)
G687973 NA non-coding downstream 136349 23746445 ~ 23746721 (-)
G687971 NA non-coding downstream 137952 23744895 ~ 23745118 (-)
G687970 NA non-coding downstream 138296 23744573 ~ 23744774 (-)
G688167 NA non-coding upstream 175540 24084060 ~ 24116642 (-)
G688191 NA non-coding upstream 209020 24117540 ~ 24117785 (-)
G688192 NA non-coding upstream 209693 24118213 ~ 24118420 (-)
G688338 rpl7l1 non-coding upstream 470783 24379303 ~ 24401141 (-)
G688369 NA non-coding upstream 521357 24429877 ~ 24434825 (-)
G687979 LOC106571438 other downstream 126160 23754832 ~ 23756910 (-)
G687890 NA other downstream 245662 23635309 ~ 23637408 (-)
G685953 NA other downstream 1722028 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 1958162 21920427 ~ 21926307 (-)
G688109 NA other upstream 79579 23988099 ~ 23988854 (-)
G688366 NA other upstream 516543 24425063 ~ 24425553 (-)
LOC110529658 LOC106571450 other upstream 530445 24438965 ~ 24446940 (-)
G688480 LOC106571453 other upstream 721034 24629554 ~ 24631049 (-)
G688537 NA other upstream 772447 24680967 ~ 24681426 (-)

Expression


Co-expression Network