si:dkey-221h15.4 (LOC106571445)


Basic Information

Item Value
gene id si:dkey-221h15.4
gene name LOC106571445
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23952710 ~ 23955758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612045.2
TTGCCTATGTGAAGTTTGTTCTgatgtgtgccacagaaagtatttgactctagccacaaaattAAATAAATTAGAGGGGGGATTCTGGCAGGGGGGAGATGATCCGGCTAATGATtcgttgattatttgaatcagctcaGTAGTGCTaggggcaaaaaacaaaacgtgcacacCTTGGGGTctcgaggaccgagtttgggaaaccctgcactAACTCCTAACACACGAAAATATCCGGAGCTCGGACTTGTAAAATATTTGTCAAACATAGCAAAGCTAAACGGATCAAATTGCAAAAAAAAACTCCCTGGAGATGCCGGGGATTGAACCCGGggcctcatacatgcaaagcatgcgctctaccactgagctacatccccttccCTGCGTTGTGACACAGATACACGTGTATACTACAGTTATGCCACAATACGAAATGAATTACAAAATATAAATTAAGTACATATTTATTTGCCCGCCGACGGATTTATGGTCGTTAAATACGTTTTAATTAGGGTAAACATAATTGTTGCTCTGTAGGCCAAGTATTTAGTTGCTACTAGGTCTACAAGGCTATACTATATAGTTTCCGGTAATGGTAGTGACTGCAGTAGCTACAACTATTactaatggtagtggtagtaacgTTAATGAACAGTAATAGGGCTGTCATAGGCCTGCTAACATTAACCCAATCTAAAATGATCTTCATAACAAATGTCCACTGACTACTAGGTGACAGGTCAAACACCAACGTGACACAGCAGATATGAGAGAACAAAAATAAAACACTCATATGACAGCCTTTGACATTAGGACAGGGGAGGGACATCTGAGTCTAATCCGAGAGAGGGACATGATGTTGCGAGACTTTGAATAAACGGATCAATAAATTCTTAGAGCGATTTGAAGATATCACCAAGATACTTTTTAAAAGGGAAGAAAACATTGTAGTAAGAGGGTCAGCCCAGCAAATATGCACAACCAACTGATCCAGTGTTTCGAGGGCTTTCTATTAAATGTGTGTTACATAAAGGAATATTTTGAGCTCATTATTGGAGCAATCTTTTACCTTTTTGAGGCCCTTGTGCGCCTGTTCATCCAGCCACCCAGGAAGGACGTGGAAGGGGAAATAGTGTTGGTAACAGGGGCAGCCAATGGTATTGGCAAACTGATAGCCAAGGAGCTGGGTCGTCGTGGGGCTACCTTGGTCCTTTGGGACGTCGACTGGGAAGCTCTTGATGAGACAGCCAAGGAACTTCGCCAGATACTGGACATACGTGTCTATGCCTATGCTTGTGACTGCAGTCGACGGACTGAGGTGTATAAAGTTGCAGACATGGTAAAGAAGGAGGTGGGGGATGTTTCCATCTTGGTGAATAATGCAGGAGTAGTGACAGGAAAGTACACCTTCACAGAGGCCCCAGACAACCTGGTGGACAGAACACTGAGGGTCAATGTCGCTGCTCACTTCTGGACATACAAGGCTTTCCTCCCTGCTATGATGTCCAGGAACCATGGGCATCTTGTGTGTGTGGCCTGTCATGGAGGACTGTTTGCTATGAACGGATTAGCAGACTACTGTGCCAGCAAGTTTGCAGCTGTTGGATTTGCTGAATCCATTGCCTTAGAGATGCTTGTCCTCAAGAAGGAGGGGGTCAAAACTACTATAGTATGTCCTTACTTGATCAACACAACCATGTTTGGAGGATGTCAGACAAAGTGGCCGTCTTTTCTGCCCATCATGGACAAGAGGGATGCAGCAAAGATGATTGTGGATGCAATCCTGAGGGAGAAGATGTATTTACTGCTACCCTCCAGTCTGTACTTCCTCATGGCATTAAAAAGCTTCATGCCAGCCAAGTTGGGCATCATCTTGGTGAATTTCTTTGGAGGATTGGATTTAATGGATCGATTCAGGGGAGTTCCAGTGCCCATTCTGCCATACAAAAAGCCTCTGCGCCAAAGATATGACAGCATTGGTGAACCACAGAATGCAATAGTCTATCACAACTAGCTAATATAAGAAGAATCCTACTGCAGTATTGCATCTTTTAAGAGGACTTTGTAAAGGAGATGTTGAATGGGGGTCAGGTAATTTGTCAAACAATCTATCATACATACAGATATTCATAAGTAAGTAAAGTGTACATTAGACTAGCCTACACACATTTCTTGAAATCATCAGAGGCAGGCAGGCAATGGCACTGTATGCAAATAGCCTATTTTGAGAATGTTTATCAGAGCTAAATAAAAACATATCTTCACATTA

Function

NR:

description
epidermal retinol dehydrogenase 2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612045.2 True 2272 mRNA 0.43 6 23952710 23955758

Neighbor

gene id symbol gene type direction distance location
cpsaseii LOC106571444 coding downstream 192 23928936 ~ 23952518 (-)
LOC118965656 NA coding downstream 6807 23945776 ~ 23945903 (-)
LOC110529650 LOC106571443 coding downstream 23902 23910501 ~ 23928808 (-)
trim54 LOC106571441 coding downstream 44190 23883070 ~ 23908520 (-)
LOC110531080 LOC106571440 coding downstream 147319 23791999 ~ 23805391 (-)
LOC110529653 rcan2 coding upstream 170000 24125758 ~ 24243880 (-)
LOC110529654 NA coding upstream 327633 24283391 ~ 24290109 (-)
ncoa1 LOC106571447 coding upstream 342184 24297942 ~ 24397937 (-)
LOC118965504 NA coding upstream 449153 24404911 ~ 24411834 (-)
LOC110529659 LOC106571449 coding upstream 480739 24436497 ~ 24438647 (-)
G688000 NA non-coding downstream 109606 23789230 ~ 23843104 (-)
G688024 NA non-coding downstream 129253 23822905 ~ 23823457 (-)
G687973 NA non-coding downstream 205989 23746445 ~ 23746721 (-)
G687971 NA non-coding downstream 207592 23744895 ~ 23745118 (-)
G687970 NA non-coding downstream 207936 23744573 ~ 23744774 (-)
G688167 NA non-coding upstream 128302 24084060 ~ 24116642 (-)
G688191 NA non-coding upstream 161782 24117540 ~ 24117785 (-)
G688192 NA non-coding upstream 162455 24118213 ~ 24118420 (-)
G688338 rpl7l1 non-coding upstream 423545 24379303 ~ 24401141 (-)
G688369 NA non-coding upstream 474119 24429877 ~ 24434825 (-)
G687979 LOC106571438 other downstream 195800 23754832 ~ 23756910 (-)
G687890 NA other downstream 315302 23635309 ~ 23637408 (-)
LOC110529643 LOC106571435 other downstream 331464 23614938 ~ 23659111 (-)
G685953 NA other downstream 1791668 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 2027802 21920427 ~ 21926307 (-)
G688109 NA other upstream 32341 23988099 ~ 23988854 (-)
G688366 NA other upstream 469305 24425063 ~ 24425553 (-)
LOC110529658 LOC106571450 other upstream 483207 24438965 ~ 24446940 (-)
G688480 LOC106571453 other upstream 673796 24629554 ~ 24631049 (-)
G688537 NA other upstream 725209 24680967 ~ 24681426 (-)

Expression


Co-expression Network