LOC110529653 (rcan2)


Basic Information

Item Value
gene id LOC110529653
gene name rcan2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24125758 ~ 24243880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612053.2
TCGACTTCTCTAGTCAGCCAGCTCTGACTAACAACCAGCCTGCCTCACAGCTAGAGATTATTACAGAGTGGGCTCTTCAgagcacaatacaacacacacactctcctcctcacacacacacaccggcttgaacacacacacagaaacacacagccaggtgcTTCGGACCGAGACGTAGATTCTAGCAGTTATTTGTCTGTTTGAGCGGTACAGAGAGGAGCAAAGTGGAAATGCCTTCGCGAAACCTGGACTGTGATATCTTTGTCCTCATTGCCTGTGTGGTGGACGTTGAGGTGTTCACCAGTCAGGAGGTCAAGGAGATGTTTGAGGCTCTGTTCCTGTCCTACGATGAGCGGGTGACGTTCCAGCTGTTCAAGAGCTTCCGGCGTGTCCGTATCAACTTCAGCAACCCCAAAGCAGCCGCAAGCGCCAGGATAGAGCTGCACGAAACGCCCTTCAGGGGCAAGAAGCTCAAGCTCTACTTCGCTCAGgtcCAGAACCCAGTATCAGATGGTGATAACCTGCACCTGGCTCCTCCTCAGCCCTCTAAACAgttcctcatctcccctcccggCTCACCGCCCATTGGCTGGCAGCAGATAGACGAGGCTACGGCCGTCATCAACTATGACCTGCTCTATGCGGTGGCCAAGCTGGGCCCCGGAGAGAAGTTTGAGCTGCATGCGGGAACAGAGTCCACTCCCAGCGTCGTAGTCCACGTGTGCGATAgcgacacagaggaggaggaagaggaaccaAAGAATTGCCCCAAACCAAAAATCATCCAGACCCGGCGCCCTGACCTTCCTGTGTCCAACTGAACTCTGTCCCCCTGCCACTTCCTTCCGTAACATCCTCGTGTGGAGGAAGGAgaatttgaccccccccccccaatctctcTCACAGGAACATTCCCCATGTTCAGCCTTCCCGCCTTAAGGCTGTCCACCTGGGCCAGAGGGGGAGTGATCTCTGTTCCTCGTCCTCGCCGACATACAGCCGTTGATGTGCTACATGTATGATCACAGAGTTAGTTTCCGTCCACTATCATTTTCACATTTCTAGTTGCAGCCACCATGCCCTCAGTGATTGGTTCCTCTCTTTATGATTCTGTTGATGTAATGTCACACAGTTAGCAGTGATGGGGCAGCACCTTGCTTTGAGCTCTTAGCGGTTGTGGTGCATGCCAGTTTAAAGAAGCCCATAGGTCGCTTTTATGGACTGTTTGCTGGACGTTAGCTTTGCTCTCGCACCACTGCGTATGTACCACAAGCACTAATGATGAATAGCACTTCTCTCATCAGGGCATGTTAGCCACTGAGGTGGTGAGGGACTGGCGCTGCATGAATTGAAGTAACCCTAAGGAATATTATAAATACTCAATACTTAAAGTTGTCAGAGGTTGTTCCTCATGTTGTCAGTGCTGTCTGTCGACcatgggatttttttttatcttgcCAATGCATGCACTGGTCTGATACAGTTTGTGTATTTACTTTGCTCCGTTTGCTGTATGTAACTGTCAatgtgacctctctctcttctctatcttctctctctcctccctgggtGTTCTGGCTATCGGTGTTCTTCACAGAAAACAATGTTTAAACCTGTTACAATCCATGCGCCTTCAAGtgaaaacattatgtacaatgaTATTTCTGTGATTTTTCCTCAATGTGAATTTTTCTGTGTCCATGTCTTGTCCCTGACAGTCTGTTTTAAAGAAAGTTGGGGGAAAAGTGaactaagaaaaaaaaacagaatgacCTTTTCCTCCTAGGTAAAAAAATGGATAGCCAATTAGATGTCATCACGTAAGGACAGTCTATAAAGTGCATGGTTACATTTTTATAGAGATATTGTGTTGTTTGAGAACAGTGGTTCAGGCATGGGGTTTCCTTGCAGTTTGTGTGCTTCTgtagagagtgagaaagaaacaTTTATTCAGACTCATAAGGAATAAGAAAATGCATCACAACGATCTTGTGAGGAtggaaaaaaaaaacgtattatcTTACACAAAATGTTCCAAGTGCTATTACACAGTTTCTGTGAAAATGGTCAAGGGGAATGACATTCACTCACACAATCATTTTTGTTTCCCTTTGTGTGTTTTGTTGAGTTTTTCCTGTGTTGGTGCAATGAGTGTCTTGGTATGCCTGAATACCTTATAGGACTATAGAACAAGCTCTGTacaaaatgcatttaaaatgCCCTGTCTGTTTGTGGAGAACGGGCGTTGTGATCAGTTTGCTATTGGCCCTTCCTTTTTTAGACACCTTTTTTAGACACTACACCAACACTGAGATTCTACACTGAGATTCATTTTTTTGACACACTGATTCCACCCTGGTGCttttctacactctaaccactcagCCTGTAACCTCAGTGTCTGTGATTTCAACCCCGatctctgatgatgatgatgatgatgatgacaaatCCAATGGTCTGATTTGATGACCCAGTTCAAAGTGTGATGATTGATAATATGGTTTACTTCACCAAGCTCCAGTAGGTTGCGCTAAATGCCCTTTTCTTCTACCTGCAATATTTCCCCATCTGCTTATAATTGACGTTTAAAGCAGATCAAATGTTGTTGGTAATAATGTGCCACTATCCTTTTTGAAAAACACAGACATCAAATGAAATTGAATACGGTCCACCAGGTTTGAATCATGGAACATTTCTTTCTTTCAAATGTTTGGGGTAACAGTAGTCCTTCATCCTTGTTTTGTTTCGTACATGCTGGTTTTAAGACACTCTTCCCTCACTGCATTTATCTGATGGTTACCAACAACACAATAACATGCCCCTGTCCAAATTATGTACTACAGCCACCATTACAACCCAAAATGAGGTGACTTGTATACATGCAATGACTTTGTTTCTAGATTTTGGTGTTTTTCGCCTAGACCCCTGGTCTGTTGAATCTGCTCTATAAGCTTGTCCTGCAGTCATATCCTTAAACATAAACTCAGTAAGAATTCTGCATGTTGTCAATATGTACCTGTATGTGATTCAAAATGTCCAGATATTTGTATTTtactgatttttttttctccaattattttttaaatcaaattattGTCTGTTTTATTCTGAGAGTCTGTTGGATTGGGAAGTAGTATCAGTGATGGGGGGGGACCAATATCTTTATTGTGTAAAACTTGTGCAACACCTTCAATGTACTTGTCATTCTACATGTACAACCTGCCTGCCTACACTAAGGATACATATCTGTATATATTAATCAATACTATTTTTACTGCATTTTTGTACAAATATTCATGGTAGCCATGTAAAAGTAGTTGACATGATTCTACGGTAGTATTAAAAGAGTTTGGTTTTAA
>XM_021612052.2
AGTAGCCTAGACTATTGGTCAAATAATGCCCCCTGTGGTGATAGCTGCATTTCATTACTGGGTAACACAAATATAATTTGGATGCAGCAGGCCAGTCATTGGTGAGTCAAGCTGTCTGCAAAAACGTCAGGATAATATCGGCTCGCAGCTGGAATGCAAGGTTGATTCACGAAGAAGAGTTAGGAGGTAGAGGCAACGCTGAAGACACGCCAGTCCGACCGATACACACTgcacatacagtcaTGAAGGGGGATCATTTATTTTCCAACCTGAGAAAAGCCACGTTCTACCAGCGGGTCTACCTtctgggaggagaggagctgCTGGTGCTGCAAAGCACTGTGGGAGTTTCCACGCTGGGTGACAGCTTCCATCAGATCACCGACTTCAACGACCTACCCACCTCCCTATTTGCCTGCAACGTGGACCAGTCCGTGTTTGAGGAGCAGGATGGCAAGGAGATGTTTGAGGCTCTGTTCCTGTCCTACGATGAGCGGGTGACGTTCCAGCTGTTCAAGAGCTTCCGGCGTGTCCGTATCAACTTCAGCAACCCCAAAGCAGCCGCAAGCGCCAGGATAGAGCTGCACGAAACGCCCTTCAGGGGCAAGAAGCTCAAGCTCTACTTCGCTCAGgtcCAGAACCCAGTATCAGATGGTGATAACCTGCACCTGGCTCCTCCTCAGCCCTCTAAACAgttcctcatctcccctcccggCTCACCGCCCATTGGCTGGCAGCAGATAGACGAGGCTACGGCCGTCATCAACTATGACCTGCTCTATGCGGTGGCCAAGCTGGGCCCCGGAGAGAAGTTTGAGCTGCATGCGGGAACAGAGTCCACTCCCAGCGTCGTAGTCCACGTGTGCGATAgcgacacagaggaggaggaagaggaaccaAAGAATTGCCCCAAACCAAAAATCATCCAGACCCGGCGCCCTGACCTTCCTGTGTCCAACTGAACTCTGTCCCCCTGCCACTTCCTTCCGTAACATCCTCGTGTGGAGGAAGGAgaatttgaccccccccccccaatctctcTCACAGGAACATTCCCCATGTTCAGCCTTCCCGCCTTAAGGCTGTCCACCTGGGCCAGAGGGGGAGTGATCTCTGTTCCTCGTCCTCGCCGACATACAGCCGTTGATGTGCTACATGTATGATCACAGAGTTAGTTTCCGTCCACTATCATTTTCACATTTCTAGTTGCAGCCACCATGCCCTCAGTGATTGGTTCCTCTCTTTATGATTCTGTTGATGTAATGTCACACAGTTAGCAGTGATGGGGCAGCACCTTGCTTTGAGCTCTTAGCGGTTGTGGTGCATGCCAGTTTAAAGAAGCCCATAGGTCGCTTTTATGGACTGTTTGCTGGACGTTAGCTTTGCTCTCGCACCACTGCGTATGTACCACAAGCACTAATGATGAATAGCACTTCTCTCATCAGGGCATGTTAGCCACTGAGGTGGTGAGGGACTGGCGCTGCATGAATTGAAGTAACCCTAAGGAATATTATAAATACTCAATACTTAAAGTTGTCAGAGGTTGTTCCTCATGTTGTCAGTGCTGTCTGTCGACcatgggatttttttttatcttgcCAATGCATGCACTGGTCTGATACAGTTTGTGTATTTACTTTGCTCCGTTTGCTGTATGTAACTGTCAatgtgacctctctctcttctctatcttctctctctcctccctgggtGTTCTGGCTATCGGTGTTCTTCACAGAAAACAATGTTTAAACCTGTTACAATCCATGCGCCTTCAAGtgaaaacattatgtacaatgaTATTTCTGTGATTTTTCCTCAATGTGAATTTTTCTGTGTCCATGTCTTGTCCCTGACAGTCTGTTTTAAAGAAAGTTGGGGGAAAAGTGaactaagaaaaaaaaacagaatgacCTTTTCCTCCTAGGTAAAAAAATGGATAGCCAATTAGATGTCATCACGTAAGGACAGTCTATAAAGTGCATGGTTACATTTTTATAGAGATATTGTGTTGTTTGAGAACAGTGGTTCAGGCATGGGGTTTCCTTGCAGTTTGTGTGCTTCTgtagagagtgagaaagaaacaTTTATTCAGACTCATAAGGAATAAGAAAATGCATCACAACGATCTTGTGAGGAtggaaaaaaaaaacgtattatcTTACACAAAATGTTCCAAGTGCTATTACACAGTTTCTGTGAAAATGGTCAAGGGGAATGACATTCACTCACACAATCATTTTTGTTTCCCTTTGTGTGTTTTGTTGAGTTTTTCCTGTGTTGGTGCAATGAGTGTCTTGGTATGCCTGAATACCTTATAGGACTATAGAACAAGCTCTGTacaaaatgcatttaaaatgCCCTGTCTGTTTGTGGAGAACGGGCGTTGTGATCAGTTTGCTATTGGCCCTTCCTTTTTTAGACACCTTTTTTAGACACTACACCAACACTGAGATTCTACACTGAGATTCATTTTTTTGACACACTGATTCCACCCTGGTGCttttctacactctaaccactcagCCTGTAACCTCAGTGTCTGTGATTTCAACCCCGatctctgatgatgatgatgatgatgatgacaaatCCAATGGTCTGATTTGATGACCCAGTTCAAAGTGTGATGATTGATAATATGGTTTACTTCACCAAGCTCCAGTAGGTTGCGCTAAATGCCCTTTTCTTCTACCTGCAATATTTCCCCATCTGCTTATAATTGACGTTTAAAGCAGATCAAATGTTGTTGGTAATAATGTGCCACTATCCTTTTTGAAAAACACAGACATCAAATGAAATTGAATACGGTCCACCAGGTTTGAATCATGGAACATTTCTTTCTTTCAAATGTTTGGGGTAACAGTAGTCCTTCATCCTTGTTTTGTTTCGTACATGCTGGTTTTAAGACACTCTTCCCTCACTGCATTTATCTGATGGTTACCAACAACACAATAACATGCCCCTGTCCAAATTATGTACTACAGCCACCATTACAACCCAAAATGAGGTGACTTGTATACATGCAATGACTTTGTTTCTAGATTTTGGTGTTTTTCGCCTAGACCCCTGGTCTGTTGAATCTGCTCTATAAGCTTGTCCTGCAGTCATATCCTTAAACATAAACTCAGTAAGAATTCTGCATGTTGTCAATATGTACCTGTATGTGATTCAAAATGTCCAGATATTTGTATTTtactgatttttttttctccaattattttttaaatcaaattattGTCTGTTTTATTCTGAGAGTCTGTTGGATTGGGAAGTAGTATCAGTGATGGGGGGGGACCAATATCTTTATTGTGTAAAACTTGTGCAACACCTTCAATGTACTTGTCATTCTACATGTACAACCTGCCTGCCTACACTAAGGATACATATCTGTATATATTAATCAATACTATTTTTACTGCATTTTTGTACAAATATTCATGGTAGCCATGTAAAAGTAGTTGACATGATTCTACGGTAGTATTAAAAGAGTTTGGTTTTAA
>XM_021612056.2
TCCGGAGTAGCCTAGACTATTGGTCAAATAATGCCCCCTGTGGTGATAGCTGCATTTCATTACTGGGTAACACAAATATAATTTGGATGCAGCAGGCCAGTCATTGGTGAGTCAAGCTGTCTGCAAAAACGTCAGGATAATATCGGCTCGCAGCTGGAATGCAAGGTTGATTCACGAAGAAGAGTTAGGAGGTAGAGGCAACGCTGAAGACACGCCAGTCCGACCGATACACACTgcacatacagtcaTGAAGGGGGATCATTTATTTTCCAACCTGAGAAAAGCCACGTTCTACCAGCGGGTCTACCTtctgggaggagaggagctgCTGGTGCTGCAAAGCACTGTGGGAGTTTCCACGCTGGGTGACAGCTTCCATCAGATCACCGACTTCAACGACCTACCCACCTCCCTATTTGCCTGCAACGTGGACCAGTCCGTGTTTGAGGAGCAGGATGGCAAGGAGATGTTTGAGGCTCTGTTCCTGTCCTACGATGAGCGGGTGACGTTCCAGCTGTTCAAGAGCTTCCGGCGTGTCCGTATCAACTTCAGCAACCCCAAAGCAGCCGCAAGCGCCAGGATAGAGCTGCACGAAACGCCCTTCAGGGGCAAGAAGCTCAAGCTCTACTTCGCTCAGgtcCAGAACCCAGTATCAGATGGTGATAACCTGCACCTGGCTCCTCCTCAGCCCTCTAAACAgttcctcatctcccctcccggCTCACCGCCCATTGGCTGGCAGCAGATAGACGAGGCTACGGCCGTCATCAACTATGACCTGCTCTATGCGGTGGCCAAGCTGGGCCCCGACAATACCGCTTGGATACAAAGAAGTTGATGACTCTCAAGAGGAGATGCGAAAGGTCCTATAACAACAATCGCCCCCTTGTATCAAAGTGACTCTGAACACCTCACTGCACCACCCCAACATACCCTATGCAAGTATTCCCTTTGTAGAACTGTGGTATGTATTATAAGCATTAGTAGTATATTTATcttctactgtatatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaattc

Function

symbol description
rcan2 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Orthologous to human RCAN2 (regulator of calcineurin 2).

NR:

description
calcipressin-2-like isoform X3

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612053.2 False 3362 mRNA 0.43 4 24125758 24194452
XM_021612052.2 False 3503 mRNA 0.44 5 24125758 24243875
XM_021612056.2 True 1061 mRNA 0.50 5 24156365 24243880

Neighbor

gene id symbol gene type direction distance location
si:dkey-221h15.4 LOC106571445 coding downstream 170000 23952710 ~ 23955758 (-)
cpsaseii LOC106571444 coding downstream 173240 23928936 ~ 23952518 (-)
LOC118965656 NA coding downstream 179855 23945776 ~ 23945903 (-)
LOC110529650 LOC106571443 coding downstream 196950 23910501 ~ 23928808 (-)
trim54 LOC106571441 coding downstream 217238 23883070 ~ 23908520 (-)
LOC110529654 NA coding upstream 39511 24283391 ~ 24290109 (-)
ncoa1 LOC106571447 coding upstream 54062 24297942 ~ 24397937 (-)
LOC118965504 NA coding upstream 161031 24404911 ~ 24411834 (-)
LOC110529659 LOC106571449 coding upstream 192617 24436497 ~ 24438647 (-)
LOC110529658 LOC106571450 coding upstream 195087 24438965 ~ 24446940 (-)
G688192 NA non-coding downstream 7338 24118213 ~ 24118420 (-)
G688191 NA non-coding downstream 7973 24117540 ~ 24117785 (-)
G688167 NA non-coding downstream 9116 24084060 ~ 24116642 (-)
G688038 NA non-coding downstream 30828 23843168 ~ 24094930 (-)
G688000 NA non-coding downstream 282654 23789230 ~ 23843104 (-)
G688338 rpl7l1 non-coding upstream 135423 24379303 ~ 24401141 (-)
G688369 NA non-coding upstream 185997 24429877 ~ 24434825 (-)
G688375 NA non-coding upstream 201941 24445821 ~ 24446118 (-)
srp09 srp09 non-coding upstream 203536 24447416 ~ 24449348 (-)
G688446 NA non-coding upstream 318173 24562053 ~ 24586713 (-)
G688109 NA other downstream 136904 23988099 ~ 23988854 (-)
G687979 LOC106571438 other downstream 368848 23754832 ~ 23756910 (-)
G687890 NA other downstream 488350 23635309 ~ 23637408 (-)
LOC110529643 LOC106571435 other downstream 504512 23614938 ~ 23659111 (-)
G685953 NA other downstream 1964716 22159030 ~ 22161042 (-)
G688366 NA other upstream 181183 24425063 ~ 24425553 (-)
G688480 LOC106571453 other upstream 385674 24629554 ~ 24631049 (-)
G688537 NA other upstream 437087 24680967 ~ 24681426 (-)
G688922 NA other upstream 492166 24736046 ~ 24737040 (-)

Expression


Co-expression Network