XLOC_025758 (xab2)


Basic Information

Item Value
gene id XLOC_025758
gene name xab2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 53317040 ~ 53350547 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050629
GCTATTGTGCTCTACGATCCCCACACGTTGGGAAAGTGTTTGTATTTTTTgacaataacacaagtttctAGTTTTATAACGAGGATATATTCAGGCAAGGGAAAATGCCATCGCTAAGCGGAAAGGCGGACGTTTTATTCGAAGATGATGATTTGCCTTATGAGGAAGAAATCATCAGGAATCCATATTCAGTCAAGTGCTGGATGCGTTACATTGAGCACAAGCAAAGTGCACAGAAATCTGTGCTCAACATGATCTATGAAAGAGCTTTAAAGGAGTTGCCTGGCAGTTACAAATTGTGGTACAACTACCTGAGAGAGAGGAGAAAACAGGTGAAAGGAAAGTGCATCACGGATCCTGGATACGAGGAGGTGAACAACTGTCACGAGAGAGCGCTTGTGTTTATGCATAAGATGCCGAGGATATGGATTGATTATTGTCAGTTCATGGTGTCTCAGTGCAAAATTACACGGAGCAGACGGACATTCGATAGAGCATTAAGAGCTCTGCCCATCACCCAGCATCCTCGCATCTGGCCTTTGTATCTTCGCTTTGCCCGGAACCTGCCTCTACCAGAGACCGCTATCCGTGTTTACCGCCGCTACTTGAAGTTGTCTCCTGAGAATGCAGAGGAATACATTGATTACTTGCGCTCGGTTGGACGCCTGGATGAAGCCGCATTACGTCTGGCTGCTGTGGTCAATGATGAAAACTTTGTTTCTAAAGAAGGAAAGTCCAATTATCAGTTGTGGCACGAGCTCTGTGATCTCATCTCACAAAACCCGGACAAGGTGACCTCGCTGAACGTGGGAGCGATTATCAGAGGAGGCCTCACTCGCTTCACTGACCAGCTGGGCAAACTCTGGTGCTCAATGGCCGATTACTACATCCGCAGTGGCCACTTCGAGAAGGCTCGAGATGTTTACGAAGAAGCCATCCTAACAGTTGTGACCGTGCGAGACTTCACCCAAGTTTTCGACAGCTACGCGCAGTTTGAGGAGAGCATGATCGCTGCCAAAATGGAGACCACATCTGAACTAGGCCAGGATGAAGACGATGACATTGACTTGGAGTTGCGGTTGGCTCGATTTGAGTCTCTTATAACTCGCCGGCCGCTTTTGTTAAACAGCGTGCTGCTGCGTCAAAACCCTCACAACGTTCACGAGTGGCACAAGAGAGTCAAACTCTATGAGGGCCAGCCTCGACAGATCATCAACACGTACACGGAAGCTGTGCAAACAATAGATCCTATGAAAGCCACTGGAAAGCCTCACAGTCTCTGGGTGTCCTTCGCCAAATTCTACGAGGATAATGAACAGATAGACGATGCTCGCACTATCTTCGAGAAGGCCACAAAGGTGAACTACAAGCAGGTGGATGATCTCGCTGCAGTGTGGTGTGAATATGGAGAGATGGAGCTGAGACACGAGAACTACGACCAGGCTTTGAGAATACTAAGGAAAGCTACAGCAATTCCAGCGAGAAAAGCCGAGTATTTTGATTCATCTGAGCCTGTGCAGAATCGTGTGTATAAATCCCTGAAAGTGTGGTCCATGCTTGCAGACTTGGAGGAAAGTCTTGGCACATTCCAGTCCACAAAGGCAGTGTATGACCGCATCATTGACCTCCGCATCGCCACACCTCAGATCATCATCAACTATGCCATGTTTCTTGAAGAGCACAACTACTTTGAGGAAAGCTTCAAGGCATATGAGCGTGGCATTGCCCTCTTCAAGTGGCCTAATGTTCATGACATCTGGAACACGTACCTCACTAAGTTCATCGACCGCTATGGAGGCAAGAAGCTGGAAAGAGCCCGAGATCTGTTCGAGCAAGCCCTGGACGGGTGTCCAGCCAAATATGCCAAAACCATCTACCTACTGTACGCCAAGCTGGAGGAGGAGTACGGTCTCGCTCGACACGCCATGGCAGTGTATGAGAGAGCCACTGCGGCAGTAGAGGCAGAGGAACGCCATCAGATGTTCAACATCTACATCAAACGCGCAGCAGAGATCTACGGAGTCACACACACCAGAGCCATCTATCAGAAGGCCATTGAGGTCCTGCCGGATGAACATGCCAGAGACATGTGTCTGCGCTTCGCTGACATGGAGAGCAAACTTGGGGAGATCGACAGAGCCAGAGCCATTTACTCTTACTGCTCCCAGATCTGTGACCCGAGGGTGACCGCTCATTTCTGGCAAACGTGGAAGGAGTTTGAGATTCGTCACGGTAATGAGGACACCATCCGAGAGATGCTGAGGATTAAACGCAGCGTTCAGGCCACGTACAACACGCAGGTCAACTTCATGTCCTCTCAGATGCTCAAGGCCACCGGCAACGCTACTGGAACAGTGTCAGATCTTGCTCCGGGGCAGAGTGGCGTGGACGACATGAGGCTGCTGGAGCAGAAGGCCCAACAGCTGGCAGCGGAGGCTGAGCGAGACAAACCCAAACCTAAAGAAAAGATTCTTTTCGTGAGGAGCGACACCTCTCGCAGTGAACTCGCTGAACTGGCCAAGCAGGCTAATCCAGATGAGATCgacattgatgatgatgatgatgaagatgaggatgcgGAGGACGCCGAGCCAGAGGAGGTGCAACTGGAGCAGAAATCTGTCCCTACTGCTGTCTTTGGAGGACTGAAGGACGACTGAATTCACAGatcatcacaaaaaaaaacaccccgAGTCTGATCTAAATAACTAAAAAGCTGAAAATGAACAGTAATTCATCCAAATGTCATTTTAGCAATACCAACTTGTACCACGTGGTGTCACTCTTTACAACATTtgtaagcttttattttttttatcatgactTTGGGTGGATAAAATGTTAAAGTGCTTGTTTTCGCCCTCCTTGTCTACTGTATATTAAATGAACAATCTTCATGCACA

Function

symbol description
xab2 Predicted to be involved in generation of catalytic spliceosome for first transesterification step. Predicted to act upstream of or within RNA processing. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Orthologous to human XAB2 (XPA binding protein 2).

GO:

id name namespace
GO:0000349 generation of catalytic spliceosome for first transesterification step biological_process
GO:0006396 RNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0071014 post-mRNA release spliceosomal complex cellular_component
GO:0000974 Prp19 complex cellular_component
GO:0071007 U2-type catalytic step 2 spliceosome cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03019 Messenger RNA biogenesis
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-685 Predicted to be involved in generation of catalytic spliceosome for first transesterification step. Predicted to act upstream of or within RNA processing. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Orthologous to human XAB2 (XPA binding protein 2).

Ensembl:

ensembl_id ENSDARG00000007092

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050629 True 2903 mRNA 0.48 19 53317040 53350547

Neighbor

gene id symbol gene type direction distance location
XLOC_025757 stxbp2 coding upstream 42755 53240562 ~ 53274285 (+)
XLOC_025756 pet100 coding upstream 85696 53228684 ~ 53231344 (+)
XLOC_025755 brd4 coding upstream 92760 53116172 ~ 53224280 (+)
XLOC_025754 pbx4 coding upstream 240571 52999962 ~ 53076469 (+)
XLOC_025753 dsn1 coding upstream 336991 52953489 ~ 52980049 (+)
XLOC_025759 camsap3 coding downstream 1471 53352018 ~ 53449437 (+)
XLOC_025760 zmp:0000001048 coding downstream 161389 53511936 ~ 53522208 (+)
XLOC_025761 NA coding downstream 176418 53526965 ~ 53652401 (+)
XLOC_025762 col5a3a coding downstream 422709 53773256 ~ 53919463 (+)
XLOC_025763 olfm2a coding downstream 662161 54012708 ~ 54238460 (+)
XLOC_025429 BX649540.1 misc upstream 23068004 30248739 ~ 30249036 (+)
XLOC_025750 NA non-coding upstream 433616 52806272 ~ 52883424 (+)
XLOC_025751 CT573476.2 non-coding upstream 488034 52828912 ~ 52829006 (+)
XLOC_025746 BX511096.1 non-coding upstream 696865 52620058 ~ 52620175 (+)
XLOC_025739 NA non-coding upstream 924835 52390252 ~ 52392205 (+)
XLOC_025738 NA non-coding upstream 928001 52377578 ~ 52389039 (+)
XLOC_025764 CU633748.1 non-coding downstream 716976 54067523 ~ 54067639 (+)
XLOC_025765 NA non-coding downstream 760842 54111389 ~ 54111972 (+)
XLOC_025766 NA non-coding downstream 920156 54270703 ~ 54271345 (+)
XLOC_025767 NA non-coding downstream 933220 54283767 ~ 54284185 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_01180049_01192316 XAB2, SYF1 coding CI01000113 null 1179836 ~ 1192316 (-)