LOC110529655 (LOC106571548)


Basic Information

Item Value
gene id LOC110529655
gene name LOC106571548
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24296379 ~ 24297456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612058.2
TACCCGGAAGATAAATAAACCAGAATTTGCAGCAAAGCCAGCAAGAGCCTTTAAGCTGCCTCACGCCACCATTGCCGACTGAAGATGGCGGCGTCAGGAACCGCAGCCCCCCGTTGCCTTGTCCAGTATGTTGTAGTCCGTTCGGATCTGGTCCATACGTTGTCCTGGCCATTGGGAGCGGTTATATCGCAAGCCTGCCATGCTGCCACCGCCGCAATTCATCTGAACTACAACGATCCAGACACGCAGGAGTACTTGGCAGAATTGGACAGCATGCACAAAGTGGTGCTTCAGGCTCTGGACCAGGCCTCCCTGTCCAGCCTGTCTGAGACGCTGACAGAAAAGGGGGTGGCTCACAAGCTGTGGGTCGAACAGCCAGAGAACGTCCCCACCTGCCTGGCCCTGAAGCCATACCCTAAAGACACTGTACACCCTCTGCTGCGCAAGTTTAAACTGTTCAAATGACACAGACACACCCTGTACATGCATGTGGTGAATGGAGTCTGGACCACGGCTCCACACCagttaagatgtttttttttttgggggggggggggttgacctGTGCATCTCGGTGAGGAACCATCATTCAGTGTCTGCTTCAGATTCAGTGTCTGCTTCAGATGGCCATTTAATGAGTGGATGTCTGGCCATGTAATTTAATGTGGCCACATATGTTGTGATTCAATGAAAGGGTGAATTGGTGACAGGTTATGTAAGGTCTTTCTCTAGCTGCTGATGAGTGGAATCTGTTTACAAACATAGTAGATGCAATAAAACAATTTAATGATTCTAA

Function

NR:

description
putative peptidyl-tRNA hydrolase PTRHD1

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612058.2 True 796 mRNA 0.50 2 24296379 24297456

Neighbor

gene id symbol gene type direction distance location
LOC118965503 NA coding upstream 22354 24271502 ~ 24274025 (+)
LOC110529652 LOC106571446 coding upstream 179724 23999401 ~ 24116655 (+)
LOC110529210 ift172 coding upstream 305375 23961761 ~ 23991295 (+)
trnaa-ugc-24 NA coding upstream 340929 23955379 ~ 23955450 (+)
LOC110529647 LOC106571442 coding upstream 413856 23879736 ~ 23882523 (+)
rpl7l1 rpl7l1 coding downstream 101257 24398713 ~ 24401141 (+)
slc5a6a LOC106571448 coding downstream 105088 24402544 ~ 24434865 (+)
LOC110529212 enah coding downstream 206359 24503815 ~ 24610563 (+)
lbr LOC106571452 coding downstream 313851 24611307 ~ 24623866 (+)
LOC110529661 LOC106571453 coding downstream 328584 24626040 ~ 24632250 (+)
G687531 NA non-coding upstream 174284 24120177 ~ 24122095 (+)
G687522 NA non-coding upstream 195710 24100273 ~ 24100669 (+)
G687504 NA non-coding upstream 243744 24051287 ~ 24052635 (+)
G687449 NA non-coding upstream 364354 23928462 ~ 23932025 (+)
G687654 NA non-coding downstream 11368 24308824 ~ 24309232 (+)
G687673 NA non-coding downstream 41328 24338784 ~ 24339645 (+)
G687746 NA non-coding downstream 138877 24436333 ~ 24437314 (+)
G687748 LOC106571449 non-coding downstream 139938 24437394 ~ 24438097 (+)
LOC110529640 LOC106571431 other upstream 772344 23484408 ~ 23524035 (+)
G686448 LOC106571417 other upstream 1323543 22946501 ~ 22972836 (+)
G685551 NA other upstream 1814240 22480323 ~ 22482139 (+)
G685469 NA other upstream 1848306 22446771 ~ 22448073 (+)
G688613 NA other downstream 685273 24982729 ~ 24984826 (+)
G688823 NA other downstream 761497 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 1381196 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 1835735 26133191 ~ 26195544 (+)
LOC110529706 LOC106571495 other downstream 2083672 26381097 ~ 26393547 (+)

Expression


Co-expression Network