LOC110529659 (LOC106571449)


Basic Information

Item Value
gene id LOC110529659
gene name LOC106571449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24436497 ~ 24438647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612065.2
GCATTACCTCACCAGTTAAGTcaaggggagggaaagagacacTGAGAAAGAGGGATGGTTGGAGAGGGAGGATGTAGGACCACGATGCGCAGCGGAGAAGCCGTGATTGGAGATTGTTAGAGGGTCTGGGTAGCTGCGGTTAAGAGCAGTCGAGCTCTGGGTCTCTGTGGGTCTTCGTTAGGGTGGCTGGATATCTGTTTGGGGCTGGTTGGTCTTCGTTAGAGTGGCTGGGGGTCCTGAAGAATTCATGGCTGAAAAGCAGCTGGAGGATCCTAAGTCCATTCCAGCAGAGCAGACCAAGATGTATTCACAGAACCAGTTCAGTCTGAGAACACCGCAGCCTGGACACAGACAGTCCACACGTAGGGATCCTAAGAAGTGGGTGAGGTCTGGGTGTGTTAATGGGGTGCAGCCTAGCAGGGCCATGAAGTCTCATCACTCCCCAGAGAACGCGGCCAGGGAGAGGAGCCGTGTGCGTAACCTCCGTCAGGCCTTCCACAGCCTGCAGGCAGCCCTGCCCTCCGTCCCCCGTGACACCAAGCTCTCCAAGCTGGACGTCCTGGTCCTGGCCACCGACTACATCGCCCACCTTACTGAGACTCTGGATCAGGGAgggcctctgtctgaactcccaCTACCCCCCAGGGCAGGGGGCTACCTCCACCCAGTCAAGAAGTGGCCGATGCGCTCCTTGCTGTACTGTGGGAGTGTGGGAGGactgctgtcagccaatcagacgCCAATGTCAGGAGAGAAGGCGACGCATCCACTGACCCCTAGCCCAGAGGTCAACATGGACAGATCCATTTAGTACTAGGAGCGATGAAATAACAATATATCCAACTTAACTTATATCCAACTGCGTATGAAACTGCAGTGAATTGCAATGTACAAGTAATGTACTTGCTGAACACGGAAACTCCTACAACGTCCAGGGGATTAGATACAATGATGACGATATAAAATACAAAACCAAAGGATCGCTTTGCTTAGCACATCGTACCACTTATTTATTACACGGCATTAAACATAAATCACTAAAAGTGTGTAAAAATATTTGTTATGATCAAAGAGTGCAATGTTGTTTTGAGGGTCTCAAAGCAATGTTGACCATTTCAGTGACTTATTGTGTTTTTAGCTTTAGGATGAATTAAAGTTGAtctttatccctgtctcctggatttgttttatttttagtgTTGTAGTTGTGTTTGGGGTGGGAGTGAAAGGATGGACAGATTAACAGAAGGGGAGGATTGTTGTGAGAACACTTGGCAACCATGTGTTCAGCTGTGGAGCCCTGAGTACTAGTCCATATCTGTGTAATAATGCCCGCTTGCGAGTAAACATTTATTCACACAGCAAACTTTGCTAAGTTGATGTAAATGACACGTTATGGCTTTGTATGTGCTATCTGACATACTTGCACTGTTGAGTGATCTTAAAGACTTTACTTCATATTA

Function

NR:

description
transcription factor 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612065.2 True 1463 mRNA 0.48 3 24436497 24438647

Neighbor

gene id symbol gene type direction distance location
LOC118965504 NA coding downstream 24663 24404911 ~ 24411834 (-)
ncoa1 LOC106571447 coding downstream 38560 24297942 ~ 24397937 (-)
LOC110529654 NA coding downstream 146388 24283391 ~ 24290109 (-)
LOC110529653 rcan2 coding downstream 192617 24125758 ~ 24243880 (-)
si:dkey-221h15.4 LOC106571445 coding downstream 480739 23952710 ~ 23955758 (-)
LOC110529658 LOC106571450 coding upstream 320 24438965 ~ 24446940 (-)
srp09 srp09 coding upstream 8946 24447416 ~ 24449348 (-)
LOC110529662 LOC106571455 coding upstream 300410 24739057 ~ 24795416 (-)
LOC110529665 LOC106571552 coding upstream 553888 24992535 ~ 25010299 (-)
cd2ap LOC106571457 coding upstream 622040 25060687 ~ 25134641 (-)
G688369 NA non-coding downstream 1672 24429877 ~ 24434825 (-)
G688338 rpl7l1 non-coding downstream 35356 24379303 ~ 24401141 (-)
G688192 NA non-coding downstream 318077 24118213 ~ 24118420 (-)
G688191 NA non-coding downstream 318712 24117540 ~ 24117785 (-)
G688167 NA non-coding downstream 319855 24084060 ~ 24116642 (-)
G688375 NA non-coding upstream 7174 24445821 ~ 24446118 (-)
G688446 NA non-coding upstream 123406 24562053 ~ 24586713 (-)
G688464 NA non-coding upstream 152688 24591335 ~ 24591789 (-)
G688466 NA non-coding upstream 159062 24597709 ~ 24597938 (-)
G688366 NA other downstream 10944 24425063 ~ 24425553 (-)
G688109 NA other downstream 447643 23988099 ~ 23988854 (-)
G687979 LOC106571438 other downstream 679587 23754832 ~ 23756910 (-)
G687890 NA other downstream 799089 23635309 ~ 23637408 (-)
LOC110529643 LOC106571435 other downstream 815251 23614938 ~ 23659111 (-)
G688480 LOC106571453 other upstream 190907 24629554 ~ 24631049 (-)
G688537 NA other upstream 242320 24680967 ~ 24681426 (-)
G688922 NA other upstream 297399 24736046 ~ 24737040 (-)

Expression


Co-expression Network