LOC110529658 (LOC106571450)


Basic Information

Item Value
gene id LOC110529658
gene name LOC106571450
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24438965 ~ 24446940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612064.2
GAACTACATTTCCCATGAATCATTGGTCTCCATTTCGACACAActgtggcagagggcagaattgTCATTGCATTTTGTGGAACAACGAACCAGCAGCAGAAAGCACCATGTTTACAGAGGTTATGTTAGCCCTGGTGGTGGGAGGAGTGATCTACATTCTGGTGCAGAAGAGTAAGAGGCCTCAGCTGAAGAGTGAAGATGGCTGGTGGGGGGAGGGGACTCCCCTGGACAGGGAAGAAGATGTCAGCATTCGCCCGTACACAGTCCGGACGAATAAGGAGGAGTTGGAGGACCTGTACAGGAGAATAGACCAGACCCGATCCTTCCCTTCTCTAGAGGATAGCCAGTTCACCTACGGCTTCAACTCCCAGTATCTGCAGAACGTGGTCTCCTACTGGAGACATGATTTtgactggaggaggcaggtggatCAACTGAACAAATACCCACATTACAAAACCAACATCGAAGGCATTGACGTGCACTACGTCCATGTGCGGCCCAAGAACCTCCCTGAGGGCGTGACTGCTGTGCCTCTGCTCATGGTGCATGGCTGGCCAGGCTCTTTCTACGAGTTCTACAGGATGATACCCCTCCTGACTCAACCCTCCAACCCAGACGACATCGTGTTTGAGGTGGTCTGTCCCTCCATCCCTGGGTACTGTTTCTCTGAGGCTCCACATAAGAAAGGTTTTGACTCAGTTTGTGCGGCTCGTGTGTTCCACAAGCTGATGAAGAGACTAGGTTTCCAACAGTTCTATGCTCATGGAGGAGACTGGGGATGGATCGTCACCACCAACATGGCCCAGCTGGAGCCCAAAATAATCAAAGGCTTGCATCTCAACTTTGCTCCCCCCTCCAAGCCGGGCCTGCCCATGGTTCTGTCTATAATGCTGGGccgccgtttccccaagatgtttGGCTTCAATGAGCACGACATCCAGCGCATCTACCCTGTTGTGCAGAACCTAGTGGTGGAGTCTGTCAAGGAGTCAGGATACATGCACATCCAGGCCACCAAGCCTGACACTGTGGGTCGAGGGTTGAATGATTCTCCAGTAGGTCTTGCTGCTTATATCTTGGAGAAGTTTTCCACCTGGACTGACCATGACTTCAGGAACCTGGATGATGGAGGACTTACGAGGAAGTTCAGTCTGGATGACCTGCTGACCAACGTGATGATCTACTGGACATCTGGCTGCATCATCTCCTCCATGCGCTTCTACAAGGAGAACTTTAGCAAGGGTCTTGACCAGCCACACTCAAAGATGCCAGTGCACGTGCCCACCGGTTTTGCCTGCTTCCCCAACGAGCTGATGCACACCCCCAAGCTGTGGGTGCAGCAGAAGTACCGCGAGCTGAAGACCTTCACGCCCATGGCCCGAGGAGGACACTTCGCCGCCATGGAGGAGCCACAACTCATGGCCCAGGACATCCAGAACTTCACCAAGATtcaggagaagaggaagaagtgATCCTCTAGTCCGCATATCAGCCTTCCTTGTTTACCAAACAGCACCAGTTGCTAGATCAGCTAGCACTGGTGTTATGATAGCACTGAAATGTGCCAGATAaacccatagagagagagacctctgcCATAGCTGGCTGTTTTACACCCATGAGCATATAATACTAGCCAGGTCCCAGATAAGTTTGTGCTGTTTTGGCATGACAACCACAAACAGTGCAGTCTGGTCTGTGACCAGGCTAATATAATACAGTAAAGCCCAGGGttgtggtcaattccatttcaattccagtcaattcagaaagtaaatcAAATTCCATATGTTACTccttgaaaagcattgaagagaacgtacttcctgaattgaaatataattgaccccaaccctggtaagGCCTCTCAATGCCCACTGCAAATGAGGTGGTGTAGAAAACATACTCTCTAGTTAGGGAATTATGAATGGATCAATGGATGAGTGAATAGAAGTTCATTTTGTTTAGGTTGTTCTTGAATTTTGAAGAGGAGAGCACAGGCAGTTCTTCGTTCAGATTACTGGCATAGTCTATGCCCGAGTGGTTATCAAATGATGCATAAAATATCAGGTGATATGTATTTTACTTTGAACACCGGTTCTGTTCTTATTTACTCAACATTATTTACAATGTTATAGTATTACATGAATAGCACTTTGTATTTCAGACACTAATATCC
>TU783821
AGGAAGTTCAGTCTGGATGACCTGCTGACCAACGTGATGATCTACTGGACATCTGGCTGCATCATCTCCTCCATGCGCTTCTACAAGGAGAACTTTAGCAAGGGTCTTGACCAGCCACACTCAAAGATGCCAGTGCACGTGCCCACCGGTTTTGCCTGCTTCCCCAACGAGCTGATGCACACCCCCAAGCTGTGGGTGCAGCAGAAGTACCGCGAGCTGAAGACCTTCACGCCCATGGCCCGAGGAGGACACTTCGCCGCCATGGAGGAGCCACAACTCATGGCCCAGGACATCCAGAACTTCACCAAGATtcaggagaagaggaagaagtgATCCTCTAGTCCGCATATCAGCCTTCCTTGTTTACCAAACAGCACCAGTTGCTAGATCAGCTAGCACTGGTGTTATGATAGCACTGAAATGTGCCAGATAaacccatagagagagagacctctgcCATAGCTGGCTGTTTTACACCCATGAGCATATAATACTAGCCAGGTCCCAGATAAGTTTGTGCTGTTTTGGCATGACAACCACAAACAGTGCAGTCTGGTCTGTGACCAGGCTAATATAATACAGTAAAGCCCAGGGttgtggtcaattccatttcaattccagtcaattcagaaagtaaatcAAATTCCATATGTTACTccttgaaaagcattgaagagaacgtacttcctgaattgaaatataattgaccccaaccctggtaagGCCTCTCAATGCCCACTGCAAATGAGGTGGTGTAGAAAACATACTCTCTAGTTAGGGAATTATGAATGGATCAATGGATGAGTGAATAGAAGTTCATTTTGTTTAGGTTGTTCTTGAATTTTGAAGAGGAGAGCACAGGCAGTTCTTCGTTCAGATTACTGGCATAGTCTATGCCCGAGTGGTTATCAAATGATGCATAAAATATCAGGTGATATGTATTTTACTTTGAACACCGGTTCTGTTCTTATTTACTCAACATTATTTACAATGTTATAGTATTACATGAATAGCACTTTGTATTTCAGACACTAATATCCTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0033961 cis-stilbene-oxide hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612064.2 False 2182 mRNA 0.48 9 24438967 24446940
TU783821 True 1042 TUCP 0.45 2 24438965 24440200

Neighbor

gene id symbol gene type direction distance location
LOC110529659 LOC106571449 coding downstream 320 24436497 ~ 24438647 (-)
LOC118965504 NA coding downstream 27133 24404911 ~ 24411834 (-)
ncoa1 LOC106571447 coding downstream 41030 24297942 ~ 24397937 (-)
LOC110529654 NA coding downstream 148858 24283391 ~ 24290109 (-)
LOC110529653 rcan2 coding downstream 195087 24125758 ~ 24243880 (-)
srp09 srp09 coding upstream 653 24447416 ~ 24449348 (-)
LOC110529662 LOC106571455 coding upstream 292117 24739057 ~ 24795416 (-)
LOC110529665 LOC106571552 coding upstream 545595 24992535 ~ 25010299 (-)
cd2ap LOC106571457 coding upstream 613747 25060687 ~ 25134641 (-)
mep1a.2 LOC106571460 coding upstream 829516 25276456 ~ 25288041 (-)
G688369 NA non-coding downstream 4142 24429877 ~ 24434825 (-)
G688338 rpl7l1 non-coding downstream 37826 24379303 ~ 24401141 (-)
G688192 NA non-coding downstream 320547 24118213 ~ 24118420 (-)
G688191 NA non-coding downstream 321182 24117540 ~ 24117785 (-)
G688167 NA non-coding downstream 322325 24084060 ~ 24116642 (-)
G688446 NA non-coding upstream 115113 24562053 ~ 24586713 (-)
G688464 NA non-coding upstream 144395 24591335 ~ 24591789 (-)
G688466 NA non-coding upstream 150769 24597709 ~ 24597938 (-)
G688467 NA non-coding upstream 151206 24598146 ~ 24598442 (-)
G688366 NA other downstream 13414 24425063 ~ 24425553 (-)
G688109 NA other downstream 450113 23988099 ~ 23988854 (-)
G687979 LOC106571438 other downstream 682057 23754832 ~ 23756910 (-)
G687890 NA other downstream 801559 23635309 ~ 23637408 (-)
LOC110529643 LOC106571435 other downstream 817721 23614938 ~ 23659111 (-)
G688480 LOC106571453 other upstream 182614 24629554 ~ 24631049 (-)
G688537 NA other upstream 234027 24680967 ~ 24681426 (-)
G688922 NA other upstream 289106 24736046 ~ 24737040 (-)
G689656 tlr5m other upstream 929182 25376122 ~ 25407347 (-)
G688375 NA non-coding upstream 5621 24445821 ~ 24446118 (-)

Expression


Co-expression Network