srp09 (srp09)


Basic Information

Item Value
gene id srp09
gene name srp09
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24447416 ~ 24449348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160617.2
GGTTTTTAAGAAGTTAGCTTGTAAACCTCACAGGCCAATTTAACCAGTTTTTCTCTTAGATTTTAGTTCGTATTCACACGGATTATGCCTTACTATCAAACATGGGAAGAGTTCGCTCGTGCAGCAGAAAAACTATATTTGACAGATCCAATGaagGTCAGGGTGGTTCTCAAATACAGACACTGTGATGGTAACCTTTGCATCAAAGTCACCGATGATGCAGTGTGTTTACAATACAAGACGGACCAGGCCCAGGACGTGAAGAAGATAGAGAAACTGCATGGCAAACTGATGAGGCTTATGGTGTCCAAGGAAAGTGGTGCCATGGAAATGGACTGAACCCCCTTACACATAGTTGTATTAACTCTTCTTTGAGTCTAGACTGTGGTGTCAATAGCACAAACGGAAGAGAACGGAGCTGGAATGACGACGTTGGATCATGAGAGGGGAAATCAAAAATGAAAATGGAGAGCATAACCTTCGCTGCTCTAAAGAGGGATTTGCTGAACCTCTTTTAAAagagcttttatttattttcatttttaagATGGACTAAAAACAGATGGAGAGACGCATGTCTAtttatgtatgttttttttttcacatcTGGAAACGTTCATGAACATGTTTAAGTGAATATGAATGAAGCATGACCTTTTTGATATTCGCACATGCTATTTTAGTGGAAGAAACATGCCTCCAATGTAATTTAGTAAACTAATAATTGcgttactcaataaatgtttatATACCCCC
>TU783819
GGTTCGCTGATGTGGTTTTTAAGAAGTTAGCTTGTAAACCTCACAGGCCAATTTAACCAGTTTTTCTCTTAGATTTTAGTTCGTATTCACACGGATTATGCCTTACTATCAAACATGGGAAGAGTTCGCTCGTGCAGCAGAAAAACTATATTTGACAGATCCAATGaagGTCAGGGTGGTTCTCAAATACAGACACTGTGATGGTAACCTTTGCATCAAAGTCACCGATGATGCAGTGTGTTTACAATACAAGACGGACCAGGCCCAGGACGTGAAGAAGATAGAGAAACTGCATGGCAAACTGATGAGGCTTATGGTGTCCAAGGAAAGTGGTGCCATGGAAATGGACTGAACCCCCTTACACATAGTTGTATTAACTCTTCTTTGAGTCTAGACTGTGGTGTCAATAGCACAAACGGAAGAGAACGGAGCTGGAATGACGACGTTGGATCATGAGAGGGGAAATCAAAAATGAAAATGGAGAGCATAACCTTCGCTGCTCTAAAGAGGGATTTGCTGAACCTCTTTTAAAagagcttttatttattttcatttttaagATGGACTAAAAACAGATGGAGAGACGCATGTCTAtttatgtatgttttttttttcacatcTGGAAACGTTCATGAACATGTTTAAGTGAATATGAATGAAGCATGACCTTTTTGATATTCGCACATGCTATTTTAGTGGAAGAAACATGCCTCCAATGTAATTTAGTAAACTAATAATTGcgttactcaataaatgtttatATACCCCCATAACAGCCAACATCTCTCAATAACTCAAAGATTTTGATTTAAAGCATTGTATGATTCCATTTCAATATCTCCCCATATTGCTTTTGTTCAAGCTACCATACTAAGCACACAGTGGCTGAATGTTTTCAAATGTTCCCTATTAATAATCAAGAATGCCTGATTTTTCTGACACCCTC
>TU783820
GGTTCGCTGATGTGGTTTTTAAGAAGTTAGCTTGTAAACCTCACAGGCCAATTTAACCAGTTTTTCTCTTAGATTTTAGTTCGTATTCACACGGATTATGCCTTACTATCAAACATGGGAAGAGTTCGCTCGTGCAGCAGAAAAACTATATTTGACAGATCCAATGaagGTCAGGGTGGTTCTCAAATACAGACACTGTGATGGTAACCTTTGCATCAAAGTCACCGATGATGCAGTGTGTTTACAATACAAGACGGACCAGGCCCAGGACGTGAAGAAGATAGAGAAACTGCATGGCAAACTGATGAGGCTTATGGTGTCCAAGGAAAGTGGTGCCATGGAAATGGACTGAACCCCCTTACACATAGTTGTATTAACTCTTCTTTGAGTCTAGACTGTGGTGTCAATAGCACAAACGGAAGAGAACGGAGCTGGAATGACGACGTTGGATCATGAGAGGGGAAATCAAAAATGAAAATGGAGAGCATAACCTTCGCTGCTCTAAAGAGGGATTTGCTGAACCTCTTTTAAAagagcttttatttattttcatttttaagATGGACTAAAAACAGATGGAGAGACGCATGTCTAtttatgtatgttttttttttcacatcTGGAAACGTTCATGAACATGTTTAAGTGAATATGAATGAAGCATGACCTTTTTGATATTCGCACATGCTATTTTAGTGGAAGAAACATGCCTCCAATGTAATTTAGTAAACTAATAATTGcgttactcaataaatgtttatATACCC

Function

NR:

description
signal recognition particle 9 kDa protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160617.2 False 756 mRNA 0.39 3 24447593 24449335
TU783819 False 946 lncRNA 0.38 3 24447416 24449348
TU783820 True 767 lncRNA 0.39 3 24447595 24449348

Neighbor

gene id symbol gene type direction distance location
LOC110529658 LOC106571450 coding downstream 653 24438965 ~ 24446940 (-)
LOC110529659 LOC106571449 coding downstream 8946 24436497 ~ 24438647 (-)
LOC118965504 NA coding downstream 35759 24404911 ~ 24411834 (-)
ncoa1 LOC106571447 coding downstream 49656 24297942 ~ 24397937 (-)
LOC110529654 NA coding downstream 157484 24283391 ~ 24290109 (-)
LOC110529662 LOC106571455 coding upstream 289722 24739057 ~ 24795416 (-)
LOC110529665 LOC106571552 coding upstream 543200 24992535 ~ 25010299 (-)
cd2ap LOC106571457 coding upstream 611352 25060687 ~ 25134641 (-)
mep1a.2 LOC106571460 coding upstream 827121 25276456 ~ 25288041 (-)
LOC110529672 LOC106571463 coding upstream 840874 25290209 ~ 25294380 (-)
G688375 NA non-coding downstream 1475 24445821 ~ 24446118 (-)
G688369 NA non-coding downstream 12768 24429877 ~ 24434825 (-)
G688338 rpl7l1 non-coding downstream 46452 24379303 ~ 24401141 (-)
G688192 NA non-coding downstream 329173 24118213 ~ 24118420 (-)
G688191 NA non-coding downstream 329808 24117540 ~ 24117785 (-)
G688446 NA non-coding upstream 112718 24562053 ~ 24586713 (-)
G688464 NA non-coding upstream 142000 24591335 ~ 24591789 (-)
G688466 NA non-coding upstream 148374 24597709 ~ 24597938 (-)
G688467 NA non-coding upstream 148811 24598146 ~ 24598442 (-)
G688491 NA non-coding upstream 203195 24652530 ~ 24652894 (-)
G688366 NA other downstream 22040 24425063 ~ 24425553 (-)
G688109 NA other downstream 458739 23988099 ~ 23988854 (-)
G687979 LOC106571438 other downstream 690683 23754832 ~ 23756910 (-)
G687890 NA other downstream 810185 23635309 ~ 23637408 (-)
G688480 LOC106571453 other upstream 180219 24629554 ~ 24631049 (-)
G688537 NA other upstream 231632 24680967 ~ 24681426 (-)
G688922 NA other upstream 286711 24736046 ~ 24737040 (-)
G689656 tlr5m other upstream 926787 25376122 ~ 25407347 (-)

Expression


Co-expression Network